Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 15:06:27 (4964): Detected: vboxwrapper 26206
2025-04-16 15:06:27 (4964): Detected: BOINC client v8.0.2
2025-04-16 15:06:28 (4964): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-16 15:06:28 (4964): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 15:06:29 (4964): Create VM. (boinc_e08de221c63b6a8d, slot#20)
2025-04-16 15:06:29 (4964): Setting Memory Size for VM. (4800MB)
2025-04-16 15:06:29 (4964): Setting CPU Count for VM. (8)
2025-04-16 15:06:30 (4964): Setting Chipset Options for VM.
2025-04-16 15:06:30 (4964): Setting Graphics Controller Options for VM.
2025-04-16 15:06:30 (4964): Setting Boot Options for VM.
2025-04-16 15:06:30 (4964): Setting Network Configuration for NAT.
2025-04-16 15:06:31 (4964): Enabling VM Network Access.
2025-04-16 15:06:31 (4964): Disabling USB Support for VM.
2025-04-16 15:06:31 (4964): Disabling COM Port Support for VM.
2025-04-16 15:06:32 (4964): Disabling LPT Port Support for VM.
2025-04-16 15:06:32 (4964): Disabling Audio Support for VM.
2025-04-16 15:06:32 (4964): Disabling Clipboard Support for VM.
2025-04-16 15:06:32 (4964): Disabling Drag and Drop Support for VM.
2025-04-16 15:06:33 (4964): Adding storage controller(s) to VM.
2025-04-16 15:06:33 (4964): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 15:06:36 (4964): Adding VirtualBox Guest Additions to VM.
2025-04-16 15:06:36 (4964): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 15:06:36 (4964): forwarding host port 50012 to guest port 80
2025-04-16 15:06:37 (4964): Enabling remote desktop for VM.
2025-04-16 15:06:37 (4964): Required extension pack not installed, remote desktop not enabled.
2025-04-16 15:06:37 (4964): Enabling shared directory for VM.
2025-04-16 15:06:37 (4964): Starting VM using VBoxManage interface. (boinc_e08de221c63b6a8d, slot#20)
2025-04-16 15:06:44 (4964): Successfully started VM. (PID = '13288')
2025-04-16 15:06:44 (4964): Reporting VM Process ID to BOINC.
2025-04-16 15:06:44 (4964): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-16 15:06:44 (4964): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 15:06:44 (4964): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 15:06:44 (4964): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 15:06:44 (4964): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 15:06:44 (4964): Detected: Web Application Enabled (http://localhost:50012)
2025-04-16 15:06:44 (4964): Preference change detected
2025-04-16 15:06:44 (4964): Setting CPU throttle for VM. (40%)
2025-04-16 15:06:45 (4964): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 15:06:46 (4964): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 15:06:46 (4964): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 15:06:52 (4964): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 15:06:52 (4964): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 15:06:52 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 15:07:00 (4964): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 15:07:00 (4964): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 15:07:14 (4964): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.000167 main     Log opened 2025-04-16T15:07:12.382291000Z
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.000281 main     OS Product: Linux
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.000324 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.000354 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.000383 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.000384 main     Process ID: 1369
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.000384 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 15:07:14 (4964): Guest Log: 00:00:00.001504 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 15:07:14 (4964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 15:07:14 (4964): Guest Log: [INFO] Mounting shared directory
2025-04-16 15:07:14 (4964): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 15:07:24 (4964): Guest Log: 00:00:10.029059 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 399 739 000ns (GuestNow=1 744 780 043 986 112 000 ns GuestLast=1 744 816 032 385 851 000 ns fSetTimeLastLoop=true )
2025-04-16 15:08:31 (4964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 15:08:31 (4964): Guest Log: [INFO] Detected branch: prod
2025-04-16 15:08:32 (4964): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 15:08:32 (4964): Guest Log: Copying input files
2025-04-16 15:08:34 (4964): Guest Log: Copied input files into RunAtlas.
2025-04-16 15:08:34 (4964): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 15:08:34 (4964): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 15:08:34 (4964): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 15:08:34 (4964): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 15:08:46 (4964): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 15:08:47 (4964): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 15:08:47 (4964): Guest Log: 2.6.3.0 1668 1 30004 144914 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 15:08:47 (4964): Guest Log: copied the webapp to /var/www
2025-04-16 15:08:48 (4964): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-16 15:08:48 (4964): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-16 15:08:50 (4964): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 15:08:50 (4964): Guest Log:  *** Starting ATLAS job. (PandaID=6603698588 taskID=44075483) ***
2025-04-16 16:46:48 (4964): Status Report: Elapsed Time: '6000.000000'
2025-04-16 16:46:48 (4964): Status Report: CPU Time: '10436.453125'
2025-04-16 17:54:12 (4964): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 17:55:29 (4964): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 18:28:11 (4964): Status Report: Elapsed Time: '12000.000000'
2025-04-16 18:28:11 (4964): Status Report: CPU Time: '31873.953125'
2025-04-16 19:56:17 (4964): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 20:20:59 (4964): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 20:33:00 (4964): Status Report: Elapsed Time: '18000.000000'
2025-04-16 20:33:00 (4964): Status Report: CPU Time: '53468.328125'
2025-04-16 21:35:12 (4964): Guest Log:  *** Job finished ***
2025-04-16 21:35:12 (4964): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:43,538 | INFO     | [payload] failed_post thread has finished
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:44,463 | INFO     | [data] copytool_out thread has finished
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:47,045 | INFO     | [data] queue_monitor thread has finished
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:47,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140100917073728)>', '<ExcThread(monitor, started 140100323227392)>']
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:48,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:48,105 | INFO     | [monitor] control thread has ended
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:52,871 | INFO     | all workflow threads have been joined
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:52,872 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:52,872 | INFO     | traces error code: 0
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:52,872 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:53,545 [wrapper] ==== pilot stdout END ====
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:53,551 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:53,556 [wrapper] pilotpid: 6052
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:53,562 [wrapper] Pilot exit status: 0
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:55,190 [wrapper] pandaids: 6603698588
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:55,227 [wrapper] cleanup supervisor_pilot 17477 6053
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:55,233 [wrapper] Test setup, not cleaning
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:55,280 [wrapper] apfmon messages muted
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:55,287 [wrapper] ==== wrapper stdout END ====
2025-04-16 21:35:12 (4964): Guest Log: 2025-04-16 11:34:55,294 [wrapper] ==== wrapper stderr END ====
2025-04-16 21:35:12 (4964): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 21:35:12 (4964): Guest Log:     "exeErrorCode": 0,
2025-04-16 21:35:12 (4964): Guest Log:     "exeErrorDiag": "",
2025-04-16 21:35:12 (4964): Guest Log:     "pilotErrorCode": 0,
2025-04-16 21:35:12 (4964): Guest Log:     "pilotErrorDiag": "",
2025-04-16 21:35:12 (4964): Guest Log:  *** Listing of results directory ***
2025-04-16 21:35:12 (4964): Guest Log: total 194008
2025-04-16 21:35:12 (4964): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 01:12 pilot3.tar.gz
2025-04-16 21:35:12 (4964): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 01:22 runpilot2-wrapper.sh
2025-04-16 21:35:12 (4964): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 01:22 queuedata.json
2025-04-16 21:35:12 (4964): Guest Log: -rwxr-xr-x. 1 atlas atlas     10445 Apr 16 05:08 init_data.xml
2025-04-16 21:35:12 (4964): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Apr 16 05:08 input.tar.gz
2025-04-16 21:35:12 (4964): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 16 05:08 start_atlas.sh
2025-04-16 21:35:12 (4964): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 05:08 EVNT.44075481._001348.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 21:35:12 (4964): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 16 05:08 pandaJob.out
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 05:09 setup.sh.local
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas    986044 Apr 16 05:13 agis_schedconf.cvmfs.json
2025-04-16 21:35:12 (4964): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 05:14 pilot3
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas 191325458 Apr 16 11:33 HITS.44075483._034346.pool.root.1
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas      1031 Apr 16 11:34 memory_monitor_summary.json
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas        97 Apr 16 11:34 pilot_heartbeat.json
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 11:34 agis_ddmendpoints.agis.ALL.json
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas    407383 Apr 16 11:34 log.44075483._034346.job.log.tgz.1
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas      7730 Apr 16 11:34 heartbeat.json
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 16 11:34 pilotlog.txt
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas   1371331 Apr 16 11:34 log.44075483._034346.job.log.1
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 11:34 output.list
2025-04-16 21:35:12 (4964): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 11:34 runtime_log
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas   1802240 Apr 16 11:34 result.tar.gz
2025-04-16 21:35:12 (4964): Guest Log: -rw-r--r--. 1 atlas atlas     10942 Apr 16 11:34 runtime_log.err
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas       660 Apr 16 11:34 LDfNDmle6O7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmbHZLDmoSVZDo.diag
2025-04-16 21:35:12 (4964): Guest Log: Looking for outputfile HITS.44075483._034346.pool.root.1
2025-04-16 21:35:12 (4964): Guest Log: HITS file was successfully produced
2025-04-16 21:35:12 (4964): Guest Log: -rw-------. 1 atlas atlas 191325458 Apr 16 11:33 /home/atlas/RunAtlas/HITS.44075483._034346.pool.root.1
2025-04-16 21:35:14 (4964): Guest Log: Successfully finished the ATLAS job!
2025-04-16 21:35:14 (4964): Guest Log: Copying the results back to the shared directory!
2025-04-16 21:35:14 (4964): Guest Log:  *** Contents of shared directory: ***
2025-04-16 21:35:14 (4964): Guest Log: total 407452
2025-04-16 21:35:14 (4964): Guest Log: -rwxrwxrwx. 1 root root 223554514 Apr 16 05:06 ATLAS.root_0
2025-04-16 21:35:14 (4964): Guest Log: -rwxrwxrwx. 1 root root 191325458 Apr 16  2025 HITS.pool.root.1
2025-04-16 21:35:14 (4964): Guest Log: -rwxrwxrwx. 1 root root     10445 Apr 16 05:06 init_data.xml
2025-04-16 21:35:14 (4964): Guest Log: -rwxrwxrwx. 1 root root    508887 Apr 16 05:04 input.tar.gz
2025-04-16 21:35:14 (4964): Guest Log: -rwxrwxrwx. 1 root root   1802240 Apr 16  2025 result.tar.gz
2025-04-16 21:35:14 (4964): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 16 05:04 start_atlas.sh
2025-04-16 21:35:14 (4964): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 21:35:14 (4964): VM Completion File Detected.
2025-04-16 21:35:14 (4964): Powering off VM.
2025-04-16 21:35:15 (4964): Successfully stopped VM.
2025-04-16 21:35:15 (4964): Deregistering VM. (boinc_e08de221c63b6a8d, slot#20)
2025-04-16 21:35:15 (4964): Removing network bandwidth throttle group from VM.
2025-04-16 21:35:15 (4964): Removing VM from VirtualBox.
21:35:21 (4964): called boinc_finish(0)

</stderr_txt>
]]>

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