Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 01:07:51 (3240): Detected: vboxwrapper 26206
2025-04-16 01:07:51 (3240): Detected: BOINC client v8.0.4
2025-04-16 01:07:52 (3240): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-16 01:07:52 (3240): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 01:07:53 (3240): Create VM. (boinc_cbda255c154ed982, slot#3)
2025-04-16 01:07:53 (3240): Setting Memory Size for VM. (4400MB)
2025-04-16 01:07:53 (3240): Setting CPU Count for VM. (4)
2025-04-16 01:07:54 (3240): Setting Chipset Options for VM.
2025-04-16 01:07:54 (3240): Setting Graphics Controller Options for VM.
2025-04-16 01:07:54 (3240): Setting Boot Options for VM.
2025-04-16 01:07:54 (3240): Setting Network Configuration for NAT.
2025-04-16 01:07:55 (3240): Enabling VM Network Access.
2025-04-16 01:07:55 (3240): Disabling USB Support for VM.
2025-04-16 01:07:55 (3240): Disabling COM Port Support for VM.
2025-04-16 01:07:55 (3240): Disabling LPT Port Support for VM.
2025-04-16 01:07:56 (3240): Disabling Audio Support for VM.
2025-04-16 01:07:56 (3240): Disabling Clipboard Support for VM.
2025-04-16 01:07:56 (3240): Disabling Drag and Drop Support for VM.
2025-04-16 01:07:56 (3240): Adding storage controller(s) to VM.
2025-04-16 01:07:57 (3240): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 01:07:57 (3240): Adding VirtualBox Guest Additions to VM.
2025-04-16 01:07:57 (3240): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 01:07:58 (3240): forwarding host port 59792 to guest port 80
2025-04-16 01:07:58 (3240): Enabling remote desktop for VM.
2025-04-16 01:07:58 (3240): Required extension pack not installed, remote desktop not enabled.
2025-04-16 01:07:58 (3240): Enabling shared directory for VM.
2025-04-16 01:07:59 (3240): Starting VM using VBoxManage interface. (boinc_cbda255c154ed982, slot#3)
2025-04-16 01:08:04 (3240): Successfully started VM. (PID = '6000')
2025-04-16 01:08:04 (3240): Reporting VM Process ID to BOINC.
2025-04-16 01:08:04 (3240): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-16 01:08:04 (3240): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 01:08:04 (3240): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 01:08:04 (3240): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 01:08:04 (3240): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 01:08:04 (3240): Detected: Web Application Enabled (http://localhost:59792)
2025-04-16 01:08:04 (3240): Preference change detected
2025-04-16 01:08:04 (3240): Setting CPU throttle for VM. (80%)
2025-04-16 01:08:04 (3240): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 01:08:06 (3240): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 01:08:06 (3240): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 01:08:15 (3240): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 01:08:15 (3240): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 01:08:15 (3240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 01:08:26 (3240): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 01:08:26 (3240): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 01:08:41 (3240): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.000203 main     Log opened 2025-04-16T01:08:39.089194000Z
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.000339 main     OS Product: Linux
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.000401 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.000433 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.000463 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.000464 main     Process ID: 1299
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.000464 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 01:08:41 (3240): Guest Log: 00:00:00.002798 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 01:08:41 (3240): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 01:08:41 (3240): Guest Log: [INFO] Mounting shared directory
2025-04-16 01:08:41 (3240): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 01:08:45 (3240): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 01:08:45 (3240): Guest Log: [INFO] Detected branch: prod
2025-04-16 01:08:45 (3240): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 01:08:45 (3240): Guest Log: Copying input files
2025-04-16 01:08:47 (3240): Guest Log: Copied input files into RunAtlas.
2025-04-16 01:08:47 (3240): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 01:08:47 (3240): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 01:08:47 (3240): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 01:08:47 (3240): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 01:08:51 (3240): Guest Log: 00:00:10.021798 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 223 764 000ns (GuestNow=1 744 780 130 321 251 000 ns GuestLast=1 744 765 719 097 487 000 ns fSetTimeLastLoop=true )
2025-04-16 01:08:55 (3240): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 01:08:56 (3240): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 01:08:56 (3240): Guest Log: 2.6.3.0 1575 0 32008 144914 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 01:08:59 (3240): Guest Log: copied the webapp to /var/www
2025-04-16 01:08:59 (3240): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-16 01:08:59 (3240): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-16 01:08:59 (3240): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 01:08:59 (3240): Guest Log:  *** Starting ATLAS job. (PandaID=6602116093 taskID=44075483) ***
2025-04-16 02:48:08 (3240): Status Report: Elapsed Time: '6000.000000'
2025-04-16 02:48:08 (3240): Status Report: CPU Time: '10222.312500'
2025-04-16 04:28:11 (3240): Status Report: Elapsed Time: '12000.000000'
2025-04-16 04:28:11 (3240): Status Report: CPU Time: '23312.468750'
2025-04-16 06:05:21 (3240): Guest Log:  *** Job finished ***
2025-04-16 06:05:21 (3240): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:07,971 | INFO     | [job] control thread has finished
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:08,611 | INFO     | [job] queue monitor thread has finished
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:09,091 | INFO     | [data] queue_monitor thread has finished
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:10,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439592126272)>', '<ExcThread(monitor, started 140438921017088)>']
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:11,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:11,117 | INFO     | [monitor] control thread has ended
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,400 | INFO     | all workflow threads have been joined
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,400 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,400 | INFO     | traces error code: 0
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,540 [wrapper] ==== pilot stdout END ====
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,596 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,629 [wrapper] pilotpid: 5912
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,706 [wrapper] Pilot exit status: 0
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:15,906 [wrapper] pandaids: 6602116093
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:16,233 [wrapper] cleanup supervisor_pilot 17408 5913
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:16,255 [wrapper] Test setup, not cleaning
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:16,274 [wrapper] apfmon messages muted
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:16,313 [wrapper] ==== wrapper stdout END ====
2025-04-16 06:05:21 (3240): Guest Log: 2025-04-16 10:05:16,350 [wrapper] ==== wrapper stderr END ====
2025-04-16 06:05:21 (3240): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 06:05:21 (3240): Guest Log:     "exeErrorCode": 0,
2025-04-16 06:05:21 (3240): Guest Log:     "exeErrorDiag": "",
2025-04-16 06:05:21 (3240): Guest Log:     "pilotErrorCode": 0,
2025-04-16 06:05:21 (3240): Guest Log:     "pilotErrorDiag": "",
2025-04-16 06:05:21 (3240): Guest Log:  *** Listing of results directory ***
2025-04-16 06:05:21 (3240): Guest Log: total 192040
2025-04-16 06:05:21 (3240): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 04:24 pilot3.tar.gz
2025-04-16 06:05:21 (3240): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 04:36 queuedata.json
2025-04-16 06:05:21 (3240): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 04:36 runpilot2-wrapper.sh
2025-04-16 06:05:21 (3240): Guest Log: -rwxr-xr-x. 1 atlas atlas     11034 Apr 16 05:08 init_data.xml
2025-04-16 06:05:21 (3240): Guest Log: -rwxr-xr-x. 1 atlas atlas    508896 Apr 16 05:08 input.tar.gz
2025-04-16 06:05:21 (3240): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 16 05:08 start_atlas.sh
2025-04-16 06:05:21 (3240): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 05:08 EVNT.44075481._000504.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 06:05:21 (3240): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 16 05:08 pandaJob.out
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 05:09 setup.sh.local
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas    986044 Apr 16 05:10 agis_schedconf.cvmfs.json
2025-04-16 06:05:21 (3240): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 05:10 pilot3
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas 189686746 Apr 16 10:03 HITS.44075483._012811.pool.root.1
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas      1027 Apr 16 10:03 memory_monitor_summary.json
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 10:04 agis_ddmendpoints.agis.ALL.json
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas    348360 Apr 16 10:04 log.44075483._012811.job.log.tgz.1
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 10:04 pilot_heartbeat.json
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas      7714 Apr 16 10:05 heartbeat.json
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 16 10:05 pilotlog.txt
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas   1243070 Apr 16 10:05 log.44075483._012811.job.log.1
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 10:05 output.list
2025-04-16 06:05:21 (3240): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 10:05 runtime_log
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas   1607680 Apr 16 10:05 result.tar.gz
2025-04-16 06:05:21 (3240): Guest Log: -rw-r--r--. 1 atlas atlas     10906 Apr 16 10:05 runtime_log.err
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas       647 Apr 16 10:05 kDqMDmPjQO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmVVVLDmDq9yZn.diag
2025-04-16 06:05:21 (3240): Guest Log: Looking for outputfile HITS.44075483._012811.pool.root.1
2025-04-16 06:05:21 (3240): Guest Log: HITS file was successfully produced
2025-04-16 06:05:21 (3240): Guest Log: -rw-------. 1 atlas atlas 189686746 Apr 16 10:03 /home/atlas/RunAtlas/HITS.44075483._012811.pool.root.1
2025-04-16 06:05:23 (3240): Guest Log: Successfully finished the ATLAS job!
2025-04-16 06:05:23 (3240): Guest Log: Copying the results back to the shared directory!
2025-04-16 06:05:23 (3240): Guest Log:  *** Contents of shared directory: ***
2025-04-16 06:05:23 (3240): Guest Log: total 409448
2025-04-16 06:05:23 (3240): Guest Log: -rwxrwxrwx. 1 root root 227427677 Apr 16 05:07 ATLAS.root_0
2025-04-16 06:05:23 (3240): Guest Log: -rwxrwxrwx. 1 root root 189686746 Apr 16 10:05 HITS.pool.root.1
2025-04-16 06:05:23 (3240): Guest Log: -rwxrwxrwx. 1 root root     11034 Apr 16 05:07 init_data.xml
2025-04-16 06:05:23 (3240): Guest Log: -rwxrwxrwx. 1 root root    508896 Apr 16 05:07 input.tar.gz
2025-04-16 06:05:23 (3240): Guest Log: -rwxrwxrwx. 1 root root   1607680 Apr 16 10:05 result.tar.gz
2025-04-16 06:05:23 (3240): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 16 05:07 start_atlas.sh
2025-04-16 06:05:23 (3240): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 06:05:23 (3240): VM Completion File Detected.
2025-04-16 06:05:23 (3240): Powering off VM.
2025-04-16 06:05:24 (3240): Successfully stopped VM.
2025-04-16 06:05:24 (3240): Deregistering VM. (boinc_cbda255c154ed982, slot#3)
2025-04-16 06:05:24 (3240): Removing network bandwidth throttle group from VM.
2025-04-16 06:05:24 (3240): Removing VM from VirtualBox.
06:05:29 (3240): called boinc_finish(0)

</stderr_txt>
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