Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:13:46 (2564600): wrapper (7.7.26015): starting
01:13:46 (2564600): wrapper: running run_atlas (--nthreads 8)
[2025-04-16 01:13:46] Arguments: --nthreads 8
[2025-04-16 01:13:46] Threads: 8
[2025-04-16 01:13:46] Checking for CVMFS
[2025-04-16 01:13:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 01:13:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 01:13:48] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 01:13:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 01:13:50] 2.12.6.0 4030568 68527 200080 144914 1 66 20782806 32935937 24715 130560 0 54693415 99.607 62501238 9726 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-16 01:13:50] CVMFS is ok
[2025-04-16 01:13:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 01:13:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 01:13:50] Further information can be found at the LHC@home message board.
[2025-04-16 01:13:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 01:13:50] Checking for apptainer binary...
[2025-04-16 01:13:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 01:13:50] Running /usr/bin/apptainer --version
[2025-04-16 01:13:50] apptainer version 1.4.0-1.el9
[2025-04-16 01:13:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 01:13:51] c6-12-25-4.aglt2.org
[2025-04-16 01:13:51] apptainer works
[2025-04-16 01:13:51] Set ATHENA_PROC_NUMBER=8
[2025-04-16 01:13:51] Set ATHENA_CORE_NUMBER=8
[2025-04-16 01:13:51] Starting ATLAS job with PandaID=6603698489
[2025-04-16 01:13:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 11:49:57]  *** The last 200 lines of the pilot log: ***
[2025-04-16 11:49:57] 2025-04-16 15:49:23,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 11:49:57] 2025-04-16 15:49:23,557 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 11:49:57] 2025-04-16 15:49:23,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 11:49:57] 2025-04-16 15:49:23,718 | INFO     | fitting pss+swap vs Time
[2025-04-16 11:49:57] 2025-04-16 15:49:23,751 | INFO     | sum of square deviations: 73542062627.51865
[2025-04-16 11:49:57] 2025-04-16 15:49:23,900 | INFO     | sum of deviations: 359129416290.3958
[2025-04-16 11:49:57] 2025-04-16 15:49:23,901 | INFO     | mean x: 1744799595.3537965
[2025-04-16 11:49:57] 2025-04-16 15:49:23,901 | INFO     | mean y: 2438469.3634894993
[2025-04-16 11:49:57] 2025-04-16 15:49:23,902 | INFO     | -- intersect: -8517976077.571689
[2025-04-16 11:49:57] 2025-04-16 15:49:23,902 | INFO     | intersect: -8517976077.571689
[2025-04-16 11:49:57] 2025-04-16 15:49:23,930 | INFO     | chi2: 8.312781926580714
[2025-04-16 11:49:57] 2025-04-16 15:49:23,989 | INFO     | sum of square deviations: 71774461502.50809
[2025-04-16 11:49:57] 2025-04-16 15:49:24,036 | INFO     | monitor loop #1487: job 0:6603698489 is in state 'finished'
[2025-04-16 11:49:57] 2025-04-16 15:49:24,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 11:49:57] 2025-04-16 15:49:24,170 | INFO     | sum of deviations: 509615505052.45624
[2025-04-16 11:49:57] 2025-04-16 15:49:24,171 | INFO     | mean x: 1744799442.863192
[2025-04-16 11:49:57] 2025-04-16 15:49:24,171 | INFO     | mean y: 2451429.838762215
[2025-04-16 11:49:57] 2025-04-16 15:49:24,171 | INFO     | -- intersect: -12386033703.677685
[2025-04-16 11:49:57] 2025-04-16 15:49:24,172 | INFO     | intersect: -12386033703.677685
[2025-04-16 11:49:57] 2025-04-16 15:49:24,178 | INFO     | chi2: 5.547517631901928
[2025-04-16 11:49:57] 2025-04-16 15:49:24,178 | INFO     | current chi2=5.547517631901928 (change=33.265209157438086 %)
[2025-04-16 11:49:57] 2025-04-16 15:49:24,196 | INFO     | sum of square deviations: 70035343659.87143
[2025-04-16 11:49:57] 2025-04-16 15:49:24,293 | INFO     | sum of deviations: 504989532454.7976
[2025-04-16 11:49:57] 2025-04-16 15:49:24,294 | INFO     | mean x: 1744799290.3694582
[2025-04-16 11:49:57] 2025-04-16 15:49:24,294 | INFO     | mean y: 2451024.236453202
[2025-04-16 11:49:57] 2025-04-16 15:49:24,295 | INFO     | -- intersect: -12578416461.047089
[2025-04-16 11:49:57] 2025-04-16 15:49:24,295 | INFO     | intersect: -12578416461.047089
[2025-04-16 11:49:57] 2025-04-16 15:49:24,311 | INFO     | chi2: 5.546867594947369
[2025-04-16 11:49:57] 2025-04-16 15:49:24,311 | INFO     | current chi2=5.546867594947369 (change=0.011717618540239325 %)
[2025-04-16 11:49:57] 2025-04-16 15:49:24,311 | INFO     | right removable region: 608
[2025-04-16 11:49:57] 2025-04-16 15:49:24,334 | INFO     | sum of square deviations: 71774062867.23303
[2025-04-16 11:49:57] 2025-04-16 15:49:24,543 | INFO     | sum of deviations: 188457444356.31622
[2025-04-16 11:49:57] 2025-04-16 15:49:24,544 | INFO     | mean x: 1744799747.8615634
[2025-04-16 11:49:57] 2025-04-16 15:49:24,556 | INFO     | mean y: 2453178.4625407164
[2025-04-16 11:49:57] 2025-04-16 15:49:24,558 | INFO     | -- intersect: -4578874508.166878
[2025-04-16 11:49:57] 2025-04-16 15:49:24,559 | INFO     | intersect: -4578874508.166878
[2025-04-16 11:49:57] 2025-04-16 15:49:24,585 | INFO     | chi2: 5.392498259557172
[2025-04-16 11:49:57] 2025-04-16 15:49:24,585 | INFO     | current chi2=5.392498259557172 (change=35.13004061475168 %)
[2025-04-16 11:49:57] 2025-04-16 15:49:24,610 | INFO     | sum of square deviations: 70034697791.34314
[2025-04-16 11:49:57] 2025-04-16 15:49:24,732 | INFO     | sum of deviations: 78309740501.60573
[2025-04-16 11:49:57] 2025-04-16 15:49:24,733 | INFO     | mean x: 1744799900.366174
[2025-04-16 11:49:57] 2025-04-16 15:49:24,733 | INFO     | mean y: 2462833.0197044336
[2025-04-16 11:49:57] 2025-04-16 15:49:24,733 | INFO     | -- intersect: -1948496216.3358538
[2025-04-16 11:49:57] 2025-04-16 15:49:24,739 | INFO     | intersect: -1948496216.3358538
[2025-04-16 11:49:57] 2025-04-16 15:49:24,741 | INFO     | chi2: 4.252670008879329
[2025-04-16 11:49:57] 2025-04-16 15:49:24,742 | INFO     | current chi2=4.252670008879329 (change=21.137294734545627 %)
[2025-04-16 11:49:57] 2025-04-16 15:49:24,742 | INFO     | left removable region: 20
[2025-04-16 11:49:57] 2025-04-16 15:49:24,811 | INFO     | sum of square deviations: 63036865689.93707
[2025-04-16 11:49:57] 2025-04-16 15:49:25,137 | INFO     | sum of deviations: 77005020836.40477
[2025-04-16 11:49:57] 2025-04-16 15:49:25,138 | INFO     | mean x: 1744799869.8758504
[2025-04-16 11:49:57] 2025-04-16 15:49:25,138 | INFO     | mean y: 2489805.6904761903
[2025-04-16 11:49:57] 2025-04-16 15:49:25,138 | INFO     | -- intersect: -2128935176.5734274
[2025-04-16 11:49:57] 2025-04-16 15:49:25,139 | INFO     | intersect: -2128935176.5734274
[2025-04-16 11:49:57] 2025-04-16 15:49:25,209 | INFO     | chi2: 0.22589006645748047
[2025-04-16 11:49:57] 2025-04-16 15:49:25,210 | INFO     | -- intersect: -2128935176.5734274
[2025-04-16 11:49:57] 2025-04-16 15:49:25,210 | INFO     | current memory leak: 1.22 B/s (using 588 data points, chi2=0.23)
[2025-04-16 11:49:57] 2025-04-16 15:49:25,263 | INFO     | ..............................
[2025-04-16 11:49:57] 2025-04-16 15:49:25,264 | INFO     | . Timing measurements:
[2025-04-16 11:49:57] 2025-04-16 15:49:25,264 | INFO     | . get job = 1 s
[2025-04-16 11:49:57] 2025-04-16 15:49:25,264 | INFO     | . initial setup = 24 s
[2025-04-16 11:49:57] 2025-04-16 15:49:25,265 | INFO     | . payload setup = 60 s
[2025-04-16 11:49:57] 2025-04-16 15:49:25,265 | INFO     | . stage-in = 4 s
[2025-04-16 11:49:57] 2025-04-16 15:49:25,265 | INFO     | . payload execution = 37772 s
[2025-04-16 11:49:57] 2025-04-16 15:49:25,304 | INFO     | . stage-out = 19 s
[2025-04-16 11:49:57] 2025-04-16 15:49:25,304 | INFO     | . log creation = 3 s
[2025-04-16 11:49:57] 2025-04-16 15:49:25,304 | INFO     | ..............................
[2025-04-16 11:49:57] 2025-04-16 15:49:28,182 | INFO     | 
[2025-04-16 11:49:57] 2025-04-16 15:49:28,183 | INFO     | job summary report
[2025-04-16 11:49:57] 2025-04-16 15:49:28,183 | INFO     | --------------------------------------------------
[2025-04-16 11:49:57] 2025-04-16 15:49:28,183 | INFO     | PanDA job id: 6603698489
[2025-04-16 11:49:57] 2025-04-16 15:49:28,183 | INFO     | task id: 44075483
[2025-04-16 11:49:57] 2025-04-16 15:49:28,184 | INFO     | errors: (none)
[2025-04-16 11:49:57] 2025-04-16 15:49:28,184 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 11:49:57] 2025-04-16 15:49:28,184 | INFO     | pilot state: finished 
[2025-04-16 11:49:57] 2025-04-16 15:49:28,184 | INFO     | transexitcode: 0
[2025-04-16 11:49:57] 2025-04-16 15:49:28,184 | INFO     | exeerrorcode: 0
[2025-04-16 11:49:57] 2025-04-16 15:49:28,185 | INFO     | exeerrordiag: 
[2025-04-16 11:49:57] 2025-04-16 15:49:28,185 | INFO     | exitcode: 0
[2025-04-16 11:49:57] 2025-04-16 15:49:28,185 | INFO     | exitmsg: OK
[2025-04-16 11:49:57] 2025-04-16 15:49:28,185 | INFO     | cpuconsumptiontime: 116386 s
[2025-04-16 11:49:57] 2025-04-16 15:49:28,185 | INFO     | nevents: 400
[2025-04-16 11:49:57] 2025-04-16 15:49:28,185 | INFO     | neventsw: 0
[2025-04-16 11:49:57] 2025-04-16 15:49:28,186 | INFO     | pid: 2604483
[2025-04-16 11:49:57] 2025-04-16 15:49:28,186 | INFO     | pgrp: 2604483
[2025-04-16 11:49:57] 2025-04-16 15:49:28,186 | INFO     | corecount: 8
[2025-04-16 11:49:57] 2025-04-16 15:49:28,210 | INFO     | event service: False
[2025-04-16 11:49:57] 2025-04-16 15:49:28,210 | INFO     | sizes: {0: 2416538, 1: 2417139, 2: 2417223, 3: 2417251, 4: 2417279, 6: 2417279, 7: 2417606, 8: 2417634, 19: 2417662, 32: 2417690, 44: 2417718, 55: 2418232, 59: 241
[2025-04-16 11:49:57] 2025-04-16 15:49:28,210 | INFO     | --------------------------------------------------
[2025-04-16 11:49:57] 2025-04-16 15:49:28,210 | INFO     | 
[2025-04-16 11:49:57] 2025-04-16 15:49:28,211 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-04-16 11:49:57] 2025-04-16 15:49:28,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,504 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,504 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,504 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,505 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,505 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,506 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,506 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,506 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,511 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,511 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,511 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,511 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,512 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 11:49:57] 2025-04-16 15:49:28,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 11:49:57] 2025-04-16 15:49:28,513 | INFO     | job 6603698489 has completed (purged errors)
[2025-04-16 11:49:57] 2025-04-16 15:49:28,513 | INFO     | overall cleanup function is called
[2025-04-16 11:49:57] 2025-04-16 15:49:29,724 | INFO     | --- collectZombieJob: --- 10, [2604483]
[2025-04-16 11:49:57] 2025-04-16 15:49:29,725 | INFO     | zombie collector waiting for pid 2604483
[2025-04-16 11:49:57] 2025-04-16 15:49:29,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 11:49:57] 2025-04-16 15:49:29,725 | INFO     | collected zombie processes
[2025-04-16 11:49:57] 2025-04-16 15:49:29,726 | INFO     | will attempt to kill all subprocesses of pid=2604483
[2025-04-16 11:49:57] 2025-04-16 15:49:39,722 | INFO     | PID=2575185 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-04-16 11:49:57] 2025-04-16 15:49:39,722 | INFO     | .. there are 32 such processes running
[2025-04-16 11:49:57] 2025-04-16 15:49:39,845 | INFO     | process IDs to be killed: [2604483] (in reverse order)
[2025-04-16 11:49:57] 2025-04-16 15:49:41,601 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 11:49:57] 2025-04-16 15:49:41,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 11:49:57] 2025-04-16 15:49:41,844 | INFO     | did not find any defunct processes belonging to 2604483
[2025-04-16 11:49:57] 2025-04-16 15:49:42,040 | INFO     | did not find any defunct processes belonging to 2604483
[2025-04-16 11:49:57] 2025-04-16 15:49:42,041 | INFO     | ready for new job
[2025-04-16 11:49:57] 2025-04-16 15:49:42,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 11:49:57] 2025-04-16 15:49:42,078 | INFO     | **************************************
[2025-04-16 11:49:57] 2025-04-16 15:49:42,078 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 11:49:57] 2025-04-16 15:49:42,078 | INFO     | **************************************
[2025-04-16 11:49:57] 2025-04-16 15:49:42,079 | INFO     | 
[2025-04-16 11:49:57] 2025-04-16 15:49:42,155 | INFO     | architecture information:
[2025-04-16 11:49:57] 2025-04-16 15:49:42,168 | INFO     | executing command: cat /etc/os-release
[2025-04-16 11:49:57] 2025-04-16 15:49:42,389 | INFO     | cat /etc/os-release:
[2025-04-16 11:49:57] NAME="CentOS Linux"
[2025-04-16 11:49:57] VERSION="7 (Core)"
[2025-04-16 11:49:57] ID="centos"
[2025-04-16 11:49:57] ID_LIKE="rhel fedora"
[2025-04-16 11:49:57] VERSION_ID="7"
[2025-04-16 11:49:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 11:49:57] ANSI_COLOR="0;31"
[2025-04-16 11:49:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 11:49:57] HOME_URL="https://www.centos.org/"
[2025-04-16 11:49:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 11:49:57] 
[2025-04-16 11:49:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 11:49:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 11:49:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 11:49:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 11:49:57] 
[2025-04-16 11:49:57] 2025-04-16 15:49:42,389 | INFO     | **************************************
[2025-04-16 11:49:57] 2025-04-16 15:49:42,894 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-04-16 11:49:57] 2025-04-16 15:49:43,037 | INFO     | sufficient remaining disk space (93497327616 B)
[2025-04-16 11:49:57] 2025-04-16 15:49:43,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 11:49:57] 2025-04-16 15:49:43,038 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 11:49:57] 2025-04-16 15:49:43,039 | INFO     | update_server=False
[2025-04-16 11:49:57] 2025-04-16 15:49:43,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 11:49:57] 2025-04-16 15:49:43,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 11:49:57] 2025-04-16 15:49:43,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 11:49:57] 2025-04-16 15:49:43,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 11:49:57] 2025-04-16 15:49:43,428 | INFO     | aborting loop
[2025-04-16 11:49:57] 2025-04-16 15:49:43,459 | INFO     | all payload control threads have been joined
[2025-04-16 11:49:57] 2025-04-16 15:49:43,758 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 11:49:57] 2025-04-16 15:49:43,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 11:49:57] 2025-04-16 15:49:43,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 11:49:57] 2025-04-16 15:49:44,046 | INFO     | [job] retrieve thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:44,140 | INFO     | all data control threads have been joined
[2025-04-16 11:49:57] 2025-04-16 15:49:44,435 | INFO     | [job] job monitor thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:44,466 | INFO     | [payload] control thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:44,788 | INFO     | all job control threads have been joined
[2025-04-16 11:49:57] 2025-04-16 15:49:44,988 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:44,995 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,017 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,023 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,061 | INFO     | [payload] failed_post thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,062 | INFO     | [data] copytool_out thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,146 | INFO     | [data] control thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,361 | INFO     | [job] validate thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,362 | INFO     | [data] copytool_in thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 11:49:57] 2025-04-16 15:49:45,567 | INFO     | [payload] validate_post thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:45,796 | INFO     | [job] control thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:46,430 | INFO     | [job] queue monitor thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:47,347 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 11:49:57] 2025-04-16 15:49:48,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497071404864)>', '<ExcThread(monitor, started 140496366204672)>']
[2025-04-16 11:49:57] 2025-04-16 15:49:48,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 11:49:57] 2025-04-16 15:49:48,799 | INFO     | [monitor] control thread has ended
[2025-04-16 11:49:57] 2025-04-16 15:49:53,112 | INFO     | all workflow threads have been joined
[2025-04-16 11:49:57] 2025-04-16 15:49:53,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 11:49:57] 2025-04-16 15:49:53,114 | INFO     | traces error code: 0
[2025-04-16 11:49:57] 2025-04-16 15:49:53,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 11:49:57] 2025-04-16 15:49:55,352 [wrapper] ==== pilot stdout END ====
[2025-04-16 11:49:57] 2025-04-16 15:49:55,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 11:49:57] 2025-04-16 15:49:55,506 [wrapper] pilotpid: 2575185
[2025-04-16 11:49:57] 2025-04-16 15:49:55,542 [wrapper] Pilot exit status: 0
[2025-04-16 11:49:57] 2025-04-16 15:49:55,687 [wrapper] pandaids: 6603698489
[2025-04-16 11:49:57] 2025-04-16 15:49:56,317 [wrapper] cleanup supervisor_pilot  775637 2575186
[2025-04-16 11:49:57] 2025-04-16 15:49:56,339 [wrapper] Test setup, not cleaning
[2025-04-16 11:49:57] 2025-04-16 15:49:56,371 [wrapper] apfmon messages muted
[2025-04-16 11:49:57] 2025-04-16 15:49:56,396 [wrapper] ==== wrapper stdout END ====
[2025-04-16 11:49:57] 2025-04-16 15:49:56,405 [wrapper] ==== wrapper stderr END ====
[2025-04-16 11:49:57]  *** Error codes and diagnostics ***
[2025-04-16 11:49:57]     "exeErrorCode": 0,
[2025-04-16 11:49:57]     "exeErrorDiag": "",
[2025-04-16 11:49:57]     "pilotErrorCode": 0,
[2025-04-16 11:49:57]     "pilotErrorDiag": "",
[2025-04-16 11:49:57]  *** Listing of results directory ***
[2025-04-16 11:49:57] total 422028
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas    495897 Apr 15 20:40 pilot3.tar.gz
[2025-04-16 11:49:57] -rwx------. 1 boincer umatlas     37140 Apr 15 21:09 runpilot2-wrapper.sh
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas      5111 Apr 15 21:09 queuedata.json
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas       100 Apr 16 01:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 11:49:57] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 16 01:13 run_atlas
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas       105 Apr 16 01:13 job.xml
[2025-04-16 11:49:57] -rw-r--r--. 2 boincer umatlas 224231721 Apr 16 01:13 EVNT.44075481._001344.pool.root.1
[2025-04-16 11:49:57] drwxrwx--x. 2 boincer umatlas      4096 Apr 16 01:13 shared
[2025-04-16 11:49:57] -rw-r--r--. 2 boincer umatlas    508891 Apr 16 01:13 input.tar.gz
[2025-04-16 11:49:57] -rw-r--r--. 2 boincer umatlas     17569 Apr 16 01:13 start_atlas.sh
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas         0 Apr 16 01:13 boinc_lockfile
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas      2579 Apr 16 01:13 pandaJob.out
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas       467 Apr 16 01:13 setup.sh.local
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas    986044 Apr 16 01:15 agis_schedconf.cvmfs.json
[2025-04-16 11:49:57] drwx------. 4 boincer umatlas      4096 Apr 16 01:15 pilot3
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas 198445601 Apr 16 11:43 HITS.44075483._034257.pool.root.1
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas       532 Apr 16 11:43 boinc_task_state.xml
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas      1049 Apr 16 11:47 memory_monitor_summary.json
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas   1603529 Apr 16 11:48 agis_ddmendpoints.agis.ALL.json
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas    547806 Apr 16 11:48 log.44075483._034257.job.log.tgz.1
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas      6860 Apr 16 11:48 init_data.xml
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas      7750 Apr 16 11:49 heartbeat.json
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas        95 Apr 16 11:49 pilot_heartbeat.json
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas      4353 Apr 16 11:49 pilotlog.txt
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas      8192 Apr 16 11:49 boinc_mmap_file
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas   2268851 Apr 16 11:49 log.44075483._034257.job.log.1
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas        29 Apr 16 11:49 wrapper_checkpoint.txt
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas       357 Apr 16 11:49 output.list
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas       620 Apr 16 11:49 runtime_log
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas   2836480 Apr 16 11:49 result.tar.gz
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas     11429 Apr 16 11:49 runtime_log.err
[2025-04-16 11:49:57] -rw-------. 1 boincer umatlas       665 Apr 16 11:49 OPeKDmkS6O7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmfGZLDmT1kyVn.diag
[2025-04-16 11:49:57] -rw-r--r--. 1 boincer umatlas     21062 Apr 16 11:49 stderr.txt
[2025-04-16 11:50:17] HITS file was successfully produced:
[2025-04-16 11:50:17] -rw-------. 1 boincer umatlas 198445601 Apr 16 11:43 shared/HITS.pool.root.1
[2025-04-16 11:50:17]  *** Contents of shared directory: ***
[2025-04-16 11:50:17] total 416076
[2025-04-16 11:50:17] -rw-r--r--. 2 boincer umatlas 224231721 Apr 16 01:13 ATLAS.root_0
[2025-04-16 11:50:17] -rw-r--r--. 2 boincer umatlas    508891 Apr 16 01:13 input.tar.gz
[2025-04-16 11:50:17] -rw-r--r--. 2 boincer umatlas     17569 Apr 16 01:13 start_atlas.sh
[2025-04-16 11:50:17] -rw-------. 1 boincer umatlas 198445601 Apr 16 11:43 HITS.pool.root.1
[2025-04-16 11:50:17] -rw-------. 1 boincer umatlas   2836480 Apr 16 11:49 result.tar.gz
11:50:19 (2564600): run_atlas exited; CPU time 119740.626964
11:50:19 (2564600): called boinc_finish(0)

</stderr_txt>
]]>

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