Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 22:00:16 (8144): Detected: vboxwrapper 26206
2025-04-16 22:00:16 (8144): Detected: BOINC client v8.0.2
2025-04-16 22:00:17 (8144): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-16 22:00:17 (8144): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 22:00:17 (8144): Create VM. (boinc_021281af7663c310, slot#0)
2025-04-16 22:00:18 (8144): Setting Memory Size for VM. (4400MB)
2025-04-16 22:00:18 (8144): Setting CPU Count for VM. (4)
2025-04-16 22:00:18 (8144): Setting Chipset Options for VM.
2025-04-16 22:00:19 (8144): Setting Graphics Controller Options for VM.
2025-04-16 22:00:19 (8144): Setting Boot Options for VM.
2025-04-16 22:00:19 (8144): Setting Network Configuration for NAT.
2025-04-16 22:00:19 (8144): Enabling VM Network Access.
2025-04-16 22:00:20 (8144): Disabling USB Support for VM.
2025-04-16 22:00:20 (8144): Disabling COM Port Support for VM.
2025-04-16 22:00:20 (8144): Disabling LPT Port Support for VM.
2025-04-16 22:00:20 (8144): Disabling Audio Support for VM.
2025-04-16 22:00:21 (8144): Disabling Clipboard Support for VM.
2025-04-16 22:00:21 (8144): Disabling Drag and Drop Support for VM.
2025-04-16 22:00:21 (8144): Adding storage controller(s) to VM.
2025-04-16 22:00:22 (8144): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 22:00:24 (8144): Adding VirtualBox Guest Additions to VM.
2025-04-16 22:00:25 (8144): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 22:00:25 (8144): forwarding host port 52147 to guest port 80
2025-04-16 22:00:25 (8144): Enabling remote desktop for VM.
2025-04-16 22:00:25 (8144): Required extension pack not installed, remote desktop not enabled.
2025-04-16 22:00:25 (8144): Enabling shared directory for VM.
2025-04-16 22:00:26 (8144): Starting VM using VBoxManage interface. (boinc_021281af7663c310, slot#0)
2025-04-16 22:00:32 (8144): Successfully started VM. (PID = '1648')
2025-04-16 22:00:32 (8144): Reporting VM Process ID to BOINC.
2025-04-16 22:00:32 (8144): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-16 22:00:32 (8144): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 22:00:32 (8144): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 22:00:32 (8144): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 22:00:32 (8144): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 22:00:32 (8144): Detected: Web Application Enabled (http://localhost:52147)
2025-04-16 22:00:32 (8144): Preference change detected
2025-04-16 22:00:32 (8144): Setting CPU throttle for VM. (100%)
2025-04-16 22:00:32 (8144): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 22:00:34 (8144): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 22:00:34 (8144): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 22:00:37 (8144): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 22:00:37 (8144): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 22:00:37 (8144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 22:00:45 (8144): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 22:00:45 (8144): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 22:00:54 (8144): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.000213 main     Log opened 2025-04-16T22:00:52.970612000Z
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.000338 main     OS Product: Linux
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.000381 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.000422 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.000461 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.000462 main     Process ID: 1311
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.000463 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 22:00:54 (8144): Guest Log: 00:00:00.001472 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 22:00:54 (8144): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 22:00:54 (8144): Guest Log: [INFO] Mounting shared directory
2025-04-16 22:00:54 (8144): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 22:01:03 (8144): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 22:01:03 (8144): Guest Log: [INFO] Detected branch: prod
2025-04-16 22:01:03 (8144): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 22:01:03 (8144): Guest Log: Copying input files
2025-04-16 22:01:04 (8144): Guest Log: 00:00:10.003820 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 226 303 000ns (GuestNow=1 744 833 663 747 432 000 ns GuestLast=1 744 840 852 973 735 000 ns fSetTimeLastLoop=true )
2025-04-16 22:01:04 (8144): Guest Log: Copied input files into RunAtlas.
2025-04-16 22:01:05 (8144): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 22:01:05 (8144): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 22:01:05 (8144): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 22:01:05 (8144): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 22:01:14 (8144): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 22:01:17 (8144): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 22:01:17 (8144): Guest Log: 2.6.3.0 1593 0 32196 144936 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 22:01:19 (8144): Guest Log: copied the webapp to /var/www
2025-04-16 22:01:19 (8144): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-16 22:01:19 (8144): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-16 22:01:19 (8144): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 22:01:19 (8144): Guest Log:  *** Starting ATLAS job. (PandaID=6603698150 taskID=44075483) ***
2025-04-16 23:44:55 (8144): Status Report: Elapsed Time: '6000.507210'
2025-04-16 23:44:55 (8144): Status Report: CPU Time: '19719.078125'
2025-04-17 01:30:15 (8144): Status Report: Elapsed Time: '12000.760839'
2025-04-17 01:30:15 (8144): Status Report: CPU Time: '44775.890625'
2025-04-17 03:14:50 (8144): Status Report: Elapsed Time: '18001.670242'
2025-04-17 03:14:50 (8144): Status Report: CPU Time: '69652.359375'
2025-04-17 03:27:13 (8144): Guest Log:  *** Job finished ***
2025-04-17 03:27:13 (8144): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:01,185 | INFO     | [job] control thread has finished
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:01,781 | INFO     | [data] copytool_out thread has finished
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:02,524 | INFO     | [data] queue_monitor thread has finished
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:04,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508784510784)>', '<ExcThread(monitor, started 140507900536576)>']
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:05,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:05,598 | INFO     | [monitor] control thread has ended
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,603 | INFO     | all workflow threads have been joined
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,604 | INFO     | end of generic workflow (traces error code: 0)
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,605 | INFO     | traces error code: 0
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,736 [wrapper] ==== pilot stdout END ====
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,741 [wrapper] ==== wrapper stdout RESUME ====
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,746 [wrapper] pilotpid: 5929
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:09,751 [wrapper] Pilot exit status: 0
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:10,037 [wrapper] pandaids: 6603698150
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:10,092 [wrapper] cleanup supervisor_pilot 21413 5930
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:10,104 [wrapper] Test setup, not cleaning
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:10,114 [wrapper] apfmon messages muted
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:10,120 [wrapper] ==== wrapper stdout END ====
2025-04-17 03:27:13 (8144): Guest Log: 2025-04-17 01:27:10,126 [wrapper] ==== wrapper stderr END ====
2025-04-17 03:27:13 (8144): Guest Log:  *** Error codes and diagnostics ***
2025-04-17 03:27:13 (8144): Guest Log:     "exeErrorCode": 0,
2025-04-17 03:27:13 (8144): Guest Log:     "exeErrorDiag": "",
2025-04-17 03:27:13 (8144): Guest Log:     "pilotErrorCode": 0,
2025-04-17 03:27:13 (8144): Guest Log:     "pilotErrorDiag": "",
2025-04-17 03:27:13 (8144): Guest Log:  *** Listing of results directory ***
2025-04-17 03:27:13 (8144): Guest Log: total 193680
2025-04-17 03:27:13 (8144): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 00:39 queuedata.json
2025-04-17 03:27:13 (8144): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 00:40 pilot3.tar.gz
2025-04-17 03:27:13 (8144): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 00:41 runpilot2-wrapper.sh
2025-04-17 03:27:13 (8144): Guest Log: -rwxr-xr-x. 1 atlas atlas     13234 Apr 16 20:01 init_data.xml
2025-04-17 03:27:13 (8144): Guest Log: -rwxr-xr-x. 1 atlas atlas    508896 Apr 16 20:01 input.tar.gz
2025-04-17 03:27:13 (8144): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 16 20:01 start_atlas.sh
2025-04-17 03:27:13 (8144): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 20:01 EVNT.44075481._001333.pool.root.1 -> /data/./ATLAS.root_0
2025-04-17 03:27:13 (8144): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 16 20:01 pandaJob.out
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 20:01 setup.sh.local
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas    986568 Apr 16 20:03 agis_schedconf.cvmfs.json
2025-04-17 03:27:13 (8144): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 20:04 pilot3
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas 190596807 Apr 17 01:25 HITS.44075483._033983.pool.root.1
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 17 01:26 memory_monitor_summary.json
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 17 01:26 agis_ddmendpoints.agis.ALL.json
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas    373890 Apr 17 01:26 log.44075483._033983.job.log.tgz.1
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas        95 Apr 17 01:26 pilot_heartbeat.json
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas      7686 Apr 17 01:26 heartbeat.json
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas      4722 Apr 17 01:27 pilotlog.txt
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas   1600113 Apr 17 01:27 log.44075483._033983.job.log.1
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas       357 Apr 17 01:27 output.list
2025-04-17 03:27:13 (8144): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 17 01:27 runtime_log
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas   1996800 Apr 17 01:27 result.tar.gz
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas       654 Apr 17 01:27 zmfNDmL15O7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmwz1KDmarYDin.diag
2025-04-17 03:27:13 (8144): Guest Log: -rw-r--r--. 1 atlas atlas     10920 Apr 17 01:27 runtime_log.err
2025-04-17 03:27:13 (8144): Guest Log: Looking for outputfile HITS.44075483._033983.pool.root.1
2025-04-17 03:27:13 (8144): Guest Log: HITS file was successfully produced
2025-04-17 03:27:13 (8144): Guest Log: -rw-------. 1 atlas atlas 190596807 Apr 17 01:25 /home/atlas/RunAtlas/HITS.44075483._033983.pool.root.1
2025-04-17 03:27:14 (8144): Guest Log: Successfully finished the ATLAS job!
2025-04-17 03:27:14 (8144): Guest Log: Copying the results back to the shared directory!
2025-04-17 03:27:14 (8144): Guest Log:  *** Contents of shared directory: ***
2025-04-17 03:27:14 (8144): Guest Log: total 409420
2025-04-17 03:27:14 (8144): Guest Log: -rwxrwxrwx. 1 root root 226098602 Apr 16 20:00 ATLAS.root_0
2025-04-17 03:27:14 (8144): Guest Log: -rwxrwxrwx. 1 root root 190596807 Apr 17 01:27 HITS.pool.root.1
2025-04-17 03:27:14 (8144): Guest Log: -rwxrwxrwx. 1 root root     13234 Apr 16 20:00 init_data.xml
2025-04-17 03:27:14 (8144): Guest Log: -rwxrwxrwx. 1 root root    508896 Apr 16 04:25 input.tar.gz
2025-04-17 03:27:14 (8144): Guest Log: -rwxrwxrwx. 1 root root   1996800 Apr 17 01:27 result.tar.gz
2025-04-17 03:27:14 (8144): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 16 04:25 start_atlas.sh
2025-04-17 03:27:14 (8144): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-17 03:27:14 (8144): VM Completion File Detected.
2025-04-17 03:27:14 (8144): Powering off VM.
2025-04-17 03:27:15 (8144): Successfully stopped VM.
2025-04-17 03:27:15 (8144): Deregistering VM. (boinc_021281af7663c310, slot#0)
2025-04-17 03:27:15 (8144): Removing network bandwidth throttle group from VM.
2025-04-17 03:27:15 (8144): Removing VM from VirtualBox.
03:27:20 (8144): called boinc_finish(0)

</stderr_txt>
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