Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:36:15 (3396310): wrapper (7.7.26015): starting
16:36:15 (3396310): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 16:36:15] Arguments: --nthreads 12
[2025-04-16 16:36:15] Threads: 12
[2025-04-16 16:36:15] Checking for CVMFS
[2025-04-16 16:36:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 16:36:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 16:36:15] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 16:36:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 16:36:16] 2.12.7.0 2546599 6364 83260 144932 3 186 2297223 4096001 1254 130560 0 13720279 99.997 1433523 844 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-04-16 16:36:16] CVMFS is ok
[2025-04-16 16:36:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 16:36:16] Checking for apptainer binary...
[2025-04-16 16:36:16] apptainer is not installed, using version from CVMFS
[2025-04-16 16:36:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 16:36:16] ryzen7
[2025-04-16 16:36:16] apptainer works
[2025-04-16 16:36:16] Set ATHENA_PROC_NUMBER=12
[2025-04-16 16:36:16] Set ATHENA_CORE_NUMBER=12
[2025-04-16 16:36:16] Starting ATLAS job with PandaID=6603682710
[2025-04-16 16:36:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 18:12:14]  *** The last 200 lines of the pilot log: ***
[2025-04-16 18:12:14]  guid=d19c8c28-9497-4e77-87a2-b73bd8ffeec9
[2025-04-16 18:12:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-16 18:12:14]  is_altstaged=None
[2025-04-16 18:12:14]  is_tar=False
[2025-04-16 18:12:14]  lfn=log.44075483._026052.job.log.tgz.1
[2025-04-16 18:12:14]  mtime=0
[2025-04-16 18:12:14]  protocol_id=None
[2025-04-16 18:12:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-16 18:12:14]  replicas=None
[2025-04-16 18:12:14]  scope=mc23_13p6TeV
[2025-04-16 18:12:14]  status=None
[2025-04-16 18:12:14]  status_code=0
[2025-04-16 18:12:14]  storage_token=
[2025-04-16 18:12:14]  surl=/opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6603682710/log.44075483._026052.job.log.tgz.1
[2025-04-16 18:12:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/fa/log.44075483._026052.job.log.tgz.1
[2025-04-16 18:12:14]  workdir=None
[2025-04-16 18:12:14] ]
[2025-04-16 18:12:14] 2025-04-16 18:11:49,952 | INFO     | transferring file log.44075483._026052.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6603682710/log.44075483._026052.job.log.tgz.1 t
[2025-04-16 18:12:14] 2025-04-16 18:11:49,952 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6603682710/log.44075483._026052.job.log.tgz.1 /opt/boinc/instance_home
[2025-04-16 18:12:14] 2025-04-16 18:11:49,959 | INFO     | adding to output.list: log.44075483._026052.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/fa/log.44075483._026052.job.log.tg
[2025-04-16 18:12:14] 2025-04-16 18:11:49,959 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-16 18:12:14] 2025-04-16 18:11:49,959 | INFO     | summary of transferred files:
[2025-04-16 18:12:14] 2025-04-16 18:11:49,959 | INFO     |  -- lfn=log.44075483._026052.job.log.tgz.1, status_code=0, status=transferred
[2025-04-16 18:12:14] 2025-04-16 18:11:49,959 | INFO     | stage-out finished correctly
[2025-04-16 18:12:14] 2025-04-16 18:11:51,205 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-16 18:12:14] 2025-04-16 18:11:53,962 | INFO     | job 6603682710 has state=finished
[2025-04-16 18:12:14] 2025-04-16 18:11:53,962 | INFO     | preparing for final server update for job 6603682710 in state='finished'
[2025-04-16 18:12:14] 2025-04-16 18:11:54,223 | WARNING  | process 3406666 can no longer be monitored (due to stat problems) - aborting
[2025-04-16 18:12:14] 2025-04-16 18:11:54,223 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6603682710/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 18:12:14] 2025-04-16 18:11:54,263 | INFO     | number of running child processes to parent process 3406666: 1
[2025-04-16 18:12:14] 2025-04-16 18:11:54,263 | INFO     | maximum number of monitored processes: 6
[2025-04-16 18:12:14] 2025-04-16 18:11:54,797 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-16 18:12:14] 2025-04-16 18:11:54,797 | INFO     | this job has now completed (state=finished)
[2025-04-16 18:12:14] 2025-04-16 18:11:54,797 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-16 18:12:14] 2025-04-16 18:11:54,797 | INFO     | log transfer has been attempted: DONE
[2025-04-16 18:12:14] 2025-04-16 18:11:54,797 | INFO     | job 6603682710 has finished - writing final server update
[2025-04-16 18:12:14] 2025-04-16 18:11:54,797 | INFO     | total number of processed events: 400 (read)
[2025-04-16 18:12:14] 2025-04-16 18:11:54,814 | INFO     | executing command: lscpu
[2025-04-16 18:12:14] 2025-04-16 18:11:54,847 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-16 18:12:14] 2025-04-16 18:11:56,270 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-16 18:12:14] 2025-04-16 18:11:56,271 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6603682710/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 18:12:14] 2025-04-16 18:11:56,271 | INFO     | extracted standard info from prmon json
[2025-04-16 18:12:14] 2025-04-16 18:11:56,271 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 18:12:14] 2025-04-16 18:11:56,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 18:12:14] 2025-04-16 18:11:56,271 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 18:12:14] 2025-04-16 18:11:56,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | fitting pss+swap vs Time
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | sum of square deviations: 204163828.0
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | sum of deviations: 18096583239.00001
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | mean x: 1744824324.0
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | mean y: 2615061.195402299
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | -- intersect: -154654352953.22644
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | intersect: -154654352953.22644
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | chi2: 1.8414061438008167
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | -- intersect: -154654352953.22644
[2025-04-16 18:12:14] 2025-04-16 18:11:56,272 | INFO     | current memory leak: 88.64 B/s (using 87 data points, chi2=1.84)
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | ..............................
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . Timing measurements:
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . get job = 0 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . initial setup = 1 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . payload setup = 1 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . stage-in = 0 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . payload execution = 5711 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . stage-out = 0 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | . log creation = 0 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,273 | INFO     | ..............................
[2025-04-16 18:12:14] 2025-04-16 18:11:56,656 | INFO     | 
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | job summary report
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | --------------------------------------------------
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | PanDA job id: 6603682710
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | task id: 44075483
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | errors: (none)
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | pilot state: finished 
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | transexitcode: 0
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | exeerrorcode: 0
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | exeerrordiag: 
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | exitcode: 0
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | exitmsg: OK
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | cpuconsumptiontime: 24766 s
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | nevents: 400
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | neventsw: 0
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | pid: 3406666
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | pgrp: 3406666
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | corecount: 12
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | event service: False
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | sizes: {0: 2417274, 2: 2417594, 11: 2417622, 5717: 2444271, 5718: 2453258, 5719: 2453314, 5724: 2453612}
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | --------------------------------------------------
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | 
[2025-04-16 18:12:14] 2025-04-16 18:11:56,657 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | job 6603682710 has completed (purged errors)
[2025-04-16 18:12:14] 2025-04-16 18:11:56,667 | INFO     | overall cleanup function is called
[2025-04-16 18:12:14] 2025-04-16 18:11:57,674 | INFO     | --- collectZombieJob: --- 10, [3406666]
[2025-04-16 18:12:14] 2025-04-16 18:11:57,674 | INFO     | zombie collector waiting for pid 3406666
[2025-04-16 18:12:14] 2025-04-16 18:11:57,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 18:12:14] 2025-04-16 18:11:57,674 | INFO     | collected zombie processes
[2025-04-16 18:12:14] 2025-04-16 18:11:57,674 | INFO     | will attempt to kill all subprocesses of pid=3406666
[2025-04-16 18:12:14] 2025-04-16 18:11:57,722 | INFO     | process IDs to be killed: [3406666] (in reverse order)
[2025-04-16 18:12:14] 2025-04-16 18:11:57,743 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 18:12:14] 2025-04-16 18:11:57,744 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 18:12:14] 2025-04-16 18:11:57,745 | INFO     | did not find any defunct processes belonging to 3406666
[2025-04-16 18:12:14] 2025-04-16 18:11:57,746 | INFO     | did not find any defunct processes belonging to 3406666
[2025-04-16 18:12:14] 2025-04-16 18:11:57,746 | INFO     | ready for new job
[2025-04-16 18:12:14] 2025-04-16 18:11:57,746 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 18:12:14] 2025-04-16 18:11:57,747 | INFO     | **************************************
[2025-04-16 18:12:14] 2025-04-16 18:11:57,747 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 18:12:14] 2025-04-16 18:11:57,747 | INFO     | **************************************
[2025-04-16 18:12:14] 2025-04-16 18:11:57,747 | INFO     | 
[2025-04-16 18:12:14] 2025-04-16 18:11:57,766 | INFO     | architecture information:
[2025-04-16 18:12:14] 2025-04-16 18:11:57,766 | INFO     | executing command: cat /etc/os-release
[2025-04-16 18:12:14] 2025-04-16 18:11:57,771 | INFO     | cat /etc/os-release:
[2025-04-16 18:12:14] NAME="CentOS Linux"
[2025-04-16 18:12:14] VERSION="7 (Core)"
[2025-04-16 18:12:14] ID="centos"
[2025-04-16 18:12:14] ID_LIKE="rhel fedora"
[2025-04-16 18:12:14] VERSION_ID="7"
[2025-04-16 18:12:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 18:12:14] ANSI_COLOR="0;31"
[2025-04-16 18:12:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 18:12:14] HOME_URL="https://www.centos.org/"
[2025-04-16 18:12:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 18:12:14] 
[2025-04-16 18:12:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 18:12:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 18:12:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 18:12:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 18:12:14] 
[2025-04-16 18:12:14] 2025-04-16 18:11:57,771 | INFO     | **************************************
[2025-04-16 18:12:14] 2025-04-16 18:11:58,274 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-04-16 18:12:14] 2025-04-16 18:11:58,279 | INFO     | sufficient remaining disk space (171638259712 B)
[2025-04-16 18:12:14] 2025-04-16 18:11:58,279 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 18:12:14] 2025-04-16 18:11:58,279 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 18:12:14] 2025-04-16 18:11:58,279 | INFO     | update_server=False
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | INFO     | aborting loop
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 18:12:14] 2025-04-16 18:11:58,280 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 18:12:14] 2025-04-16 18:11:59,274 | INFO     | all data control threads have been joined
[2025-04-16 18:12:14] 2025-04-16 18:11:59,285 | INFO     | [job] retrieve thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:11:59,285 | INFO     | [job] queue monitor thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:11:59,285 | INFO     | [job] job monitor thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:11:59,338 | INFO     | [data] copytool_in thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:11:59,355 | INFO     | all job control threads have been joined
[2025-04-16 18:12:14] 2025-04-16 18:11:59,466 | INFO     | all payload control threads have been joined
[2025-04-16 18:12:14] 2025-04-16 18:11:59,605 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:11:59,662 | INFO     | [payload] failed_post thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,279 | INFO     | [data] control thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,285 | INFO     | [data] copytool_out thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,310 | INFO     | [payload] validate_post thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,360 | INFO     | [job] control thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,471 | INFO     | [payload] control thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,628 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,743 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:00,771 | INFO     | [job] validate thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:01,744 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 18:12:14] 2025-04-16 18:12:05,749 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:08,444 | INFO     | job.realtimelogging is not enabled
[2025-04-16 18:12:14] 2025-04-16 18:12:09,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 18:12:14] 2025-04-16 18:12:09,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139745389639488)>', '<ExcThread(monitor, started 139745162606336)>']
[2025-04-16 18:12:14] 2025-04-16 18:12:10,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 18:12:14] 2025-04-16 18:12:10,339 | INFO     | [monitor] control thread has ended
[2025-04-16 18:12:14] 2025-04-16 18:12:14,847 | INFO     | all workflow threads have been joined
[2025-04-16 18:12:14] 2025-04-16 18:12:14,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 18:12:14] 2025-04-16 18:12:14,848 | INFO     | traces error code: 0
[2025-04-16 18:12:14] 2025-04-16 18:12:14,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 18:12:14] 2025-04-16 18:12:14,885 [wrapper] ==== pilot stdout END ====
[2025-04-16 18:12:14] 2025-04-16 18:12:14,886 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 18:12:14] 2025-04-16 18:12:14,887 [wrapper] pilotpid: 3400035
[2025-04-16 18:12:14] 2025-04-16 18:12:14,888 [wrapper] Pilot exit status: 0
[2025-04-16 18:12:14] 2025-04-16 18:12:14,892 [wrapper] pandaids: 6603682710
[2025-04-16 18:12:14] 2025-04-16 18:12:14,905 [wrapper] cleanup supervisor_pilot 3426879 3400036
[2025-04-16 18:12:14] 2025-04-16 18:12:14,907 [wrapper] Test setup, not cleaning
[2025-04-16 18:12:14] 2025-04-16 18:12:14,908 [wrapper] apfmon messages muted
[2025-04-16 18:12:14] 2025-04-16 18:12:14,909 [wrapper] ==== wrapper stdout END ====
[2025-04-16 18:12:14] 2025-04-16 18:12:14,910 [wrapper] ==== wrapper stderr END ====
[2025-04-16 18:12:14]  *** Error codes and diagnostics ***
[2025-04-16 18:12:14]     "exeErrorCode": 0,
[2025-04-16 18:12:14]     "exeErrorDiag": "",
[2025-04-16 18:12:14]     "pilotErrorCode": 0,
[2025-04-16 18:12:14]     "pilotErrorDiag": "",
[2025-04-16 18:12:14]  *** Listing of results directory ***
[2025-04-16 18:12:14] total 417472
[2025-04-16 18:12:14] -rw-r--r-- 1 boinc boinc    495897 Apr 15 08:24 pilot3.tar.gz
[2025-04-16 18:12:14] -rwx------ 1 boinc boinc     37140 Apr 15 08:28 runpilot2-wrapper.sh
[2025-04-16 18:12:14] -rw-r--r-- 1 boinc boinc      5111 Apr 15 08:28 queuedata.json
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc       100 Apr 16 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 18:12:14] -rwxr-xr-x 1 boinc boinc      7986 Apr 16 16:36 run_atlas
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc       105 Apr 16 16:36 job.xml
[2025-04-16 18:12:14] -rw-r--r-- 2 boinc boinc     17569 Apr 16 16:36 start_atlas.sh
[2025-04-16 18:12:14] drwxrwx--x 2 boinc boinc      4096 Apr 16 16:36 shared
[2025-04-16 18:12:14] -rw-r--r-- 2 boinc boinc    508891 Apr 16 16:36 input.tar.gz
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc      9680 Apr 16 16:36 init_data.xml
[2025-04-16 18:12:14] -rw-r--r-- 2 boinc boinc 222742027 Apr 16 16:36 EVNT.44075481._001016.pool.root.1
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc         0 Apr 16 16:36 boinc_lockfile
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc      2578 Apr 16 16:36 pandaJob.out
[2025-04-16 18:12:14] -rw------- 1 boinc boinc       424 Apr 16 16:36 setup.sh.local
[2025-04-16 18:12:14] -rw------- 1 boinc boinc    986568 Apr 16 16:36 agis_schedconf.cvmfs.json
[2025-04-16 18:12:14] -rw------- 1 boinc boinc   1603529 Apr 16 16:36 agis_ddmendpoints.agis.ALL.json
[2025-04-16 18:12:14] drwx------ 4 boinc boinc      4096 Apr 16 16:36 pilot3
[2025-04-16 18:12:14] -rw------- 1 boinc boinc        95 Apr 16 18:11 pilot_heartbeat.json
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc       530 Apr 16 18:11 boinc_task_state.xml
[2025-04-16 18:12:14] -rw------- 1 boinc boinc 198972731 Apr 16 18:11 HITS.44075483._026052.pool.root.1
[2025-04-16 18:12:14] -rw------- 1 boinc boinc      1020 Apr 16 18:11 memory_monitor_summary.json
[2025-04-16 18:12:14] -rw------- 1 boinc boinc    382769 Apr 16 18:11 log.44075483._026052.job.log.tgz.1
[2025-04-16 18:12:14] -rw------- 1 boinc boinc      7652 Apr 16 18:11 heartbeat.json
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc      8192 Apr 16 18:11 boinc_mmap_file
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc        27 Apr 16 18:11 wrapper_checkpoint.txt
[2025-04-16 18:12:14] -rw------- 1 boinc boinc      4572 Apr 16 18:12 pilotlog.txt
[2025-04-16 18:12:14] -rw------- 1 boinc boinc    577550 Apr 16 18:12 log.44075483._026052.job.log.1
[2025-04-16 18:12:14] -rw------- 1 boinc boinc       357 Apr 16 18:12 output.list
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc       620 Apr 16 18:12 runtime_log
[2025-04-16 18:12:14] -rw------- 1 boinc boinc    983040 Apr 16 18:12 result.tar.gz
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc     11399 Apr 16 18:12 runtime_log.err
[2025-04-16 18:12:14] -rw------- 1 boinc boinc       648 Apr 16 18:12 m9yLDm8pqO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm5I1KDmwAShbm.diag
[2025-04-16 18:12:14] -rw-rw-r-- 1 boinc boinc     21141 Apr 16 18:12 stderr.txt
[2025-04-16 18:12:14] HITS file was successfully produced:
[2025-04-16 18:12:14] -rw------- 1 boinc boinc 198972731 Apr 16 18:11 shared/HITS.pool.root.1
[2025-04-16 18:12:14]  *** Contents of shared directory: ***
[2025-04-16 18:12:14] total 413324
[2025-04-16 18:12:14] -rw-r--r-- 2 boinc boinc     17569 Apr 16 16:36 start_atlas.sh
[2025-04-16 18:12:14] -rw-r--r-- 2 boinc boinc    508891 Apr 16 16:36 input.tar.gz
[2025-04-16 18:12:14] -rw-r--r-- 2 boinc boinc 222742027 Apr 16 16:36 ATLAS.root_0
[2025-04-16 18:12:14] -rw------- 1 boinc boinc 198972731 Apr 16 18:11 HITS.pool.root.1
[2025-04-16 18:12:14] -rw------- 1 boinc boinc    983040 Apr 16 18:12 result.tar.gz
18:12:16 (3396310): run_atlas exited; CPU time 24791.751491
18:12:16 (3396310): called boinc_finish(0)

</stderr_txt>
]]>

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