Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 15:04:06 (2808): Detected: vboxwrapper 26206
2025-04-15 15:04:06 (2808): Detected: BOINC client v8.0.4
2025-04-15 15:04:06 (2808): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-15 15:04:07 (2808): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 15:04:07 (2808): Create VM. (boinc_77d0ac3e26044a71, slot#3)
2025-04-15 15:04:08 (2808): Setting Memory Size for VM. (4400MB)
2025-04-15 15:04:08 (2808): Setting CPU Count for VM. (4)
2025-04-15 15:04:08 (2808): Setting Chipset Options for VM.
2025-04-15 15:04:09 (2808): Setting Graphics Controller Options for VM.
2025-04-15 15:04:09 (2808): Setting Boot Options for VM.
2025-04-15 15:04:09 (2808): Setting Network Configuration for NAT.
2025-04-15 15:04:09 (2808): Enabling VM Network Access.
2025-04-15 15:04:10 (2808): Disabling USB Support for VM.
2025-04-15 15:04:10 (2808): Disabling COM Port Support for VM.
2025-04-15 15:04:10 (2808): Disabling LPT Port Support for VM.
2025-04-15 15:04:10 (2808): Disabling Audio Support for VM.
2025-04-15 15:04:11 (2808): Disabling Clipboard Support for VM.
2025-04-15 15:04:11 (2808): Disabling Drag and Drop Support for VM.
2025-04-15 15:04:11 (2808): Adding storage controller(s) to VM.
2025-04-15 15:04:11 (2808): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 15:04:12 (2808): Adding VirtualBox Guest Additions to VM.
2025-04-15 15:04:12 (2808): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 15:04:13 (2808): forwarding host port 56347 to guest port 80
2025-04-15 15:04:13 (2808): Enabling remote desktop for VM.
2025-04-15 15:04:13 (2808): Required extension pack not installed, remote desktop not enabled.
2025-04-15 15:04:13 (2808): Enabling shared directory for VM.
2025-04-15 15:04:14 (2808): Starting VM using VBoxManage interface. (boinc_77d0ac3e26044a71, slot#3)
2025-04-15 15:04:19 (2808): Successfully started VM. (PID = '2584')
2025-04-15 15:04:19 (2808): Reporting VM Process ID to BOINC.
2025-04-15 15:04:19 (2808): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-15 15:04:19 (2808): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 15:04:19 (2808): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 15:04:19 (2808): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 15:04:19 (2808): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 15:04:19 (2808): Detected: Web Application Enabled (http://localhost:56347)
2025-04-15 15:04:19 (2808): Preference change detected
2025-04-15 15:04:19 (2808): Setting CPU throttle for VM. (80%)
2025-04-15 15:04:19 (2808): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 15:04:21 (2808): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 15:04:21 (2808): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 15:04:24 (2808): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 15:04:24 (2808): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 15:04:24 (2808): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 15:04:43 (2808): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 15:04:43 (2808): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 15:05:00 (2808): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.000204 main     Log opened 2025-04-15T15:04:57.478602000Z
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.000335 main     OS Product: Linux
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.000372 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.000401 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.000429 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.000430 main     Process ID: 1300
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.000430 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 15:05:00 (2808): Guest Log: 00:00:00.001900 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 15:05:00 (2808): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 15:05:00 (2808): Guest Log: [INFO] Mounting shared directory
2025-04-15 15:05:00 (2808): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 15:05:04 (2808): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 15:05:04 (2808): Guest Log: [INFO] Detected branch: prod
2025-04-15 15:05:05 (2808): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 15:05:05 (2808): Guest Log: Copying input files
2025-04-15 15:05:07 (2808): Guest Log: Copied input files into RunAtlas.
2025-04-15 15:05:07 (2808): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-15 15:05:07 (2808): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-15 15:05:07 (2808): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-15 15:05:07 (2808): Guest Log: Further information can be found at the LHC@home message board.
2025-04-15 15:05:10 (2808): Guest Log: 00:00:10.023009 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 680 582 000ns (GuestNow=1 744 743 909 163 970 000 ns GuestLast=1 744 729 497 483 388 000 ns fSetTimeLastLoop=true )
2025-04-15 15:05:16 (2808): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 15:05:17 (2808): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 15:05:17 (2808): Guest Log: 2.6.3.0 1588 0 30088 144900 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-15 15:05:20 (2808): Guest Log: copied the webapp to /var/www
2025-04-15 15:05:20 (2808): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-15 15:05:20 (2808): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-15 15:05:20 (2808): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 15:05:20 (2808): Guest Log:  *** Starting ATLAS job. (PandaID=6603680591 taskID=44075483) ***
2025-04-15 16:44:22 (2808): Status Report: Elapsed Time: '6000.000000'
2025-04-15 16:44:22 (2808): Status Report: CPU Time: '9432.593750'
2025-04-15 18:24:26 (2808): Status Report: Elapsed Time: '12000.000000'
2025-04-15 18:24:26 (2808): Status Report: CPU Time: '23154.921875'
2025-04-15 20:04:06 (2808): Guest Log:  *** Job finished ***
2025-04-15 20:04:06 (2808): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:03:55,958 | INFO     | [data] copytool_out thread has finished
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:03:56,959 | INFO     | [data] queue_monitor thread has finished
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:03:56,960 | INFO     | [job] queue monitor thread has finished
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:03:57,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140009010399040)>', '<ExcThread(monitor, started 140008719628032)>']
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:03:58,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:03:58,039 | INFO     | [monitor] control thread has ended
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,307 | INFO     | all workflow threads have been joined
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,308 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,308 | INFO     | traces error code: 0
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,491 [wrapper] ==== pilot stdout END ====
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,526 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,545 [wrapper] pilotpid: 5921
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,571 [wrapper] Pilot exit status: 0
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:02,815 [wrapper] pandaids: 6603680591
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:03,104 [wrapper] cleanup supervisor_pilot 17416 5922
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:03,131 [wrapper] Test setup, not cleaning
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:03,215 [wrapper] apfmon messages muted
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:03,255 [wrapper] ==== wrapper stdout END ====
2025-04-15 20:04:06 (2808): Guest Log: 2025-04-16 00:04:03,305 [wrapper] ==== wrapper stderr END ====
2025-04-15 20:04:06 (2808): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 20:04:06 (2808): Guest Log:     "exeErrorCode": 0,
2025-04-15 20:04:06 (2808): Guest Log:     "exeErrorDiag": "",
2025-04-15 20:04:06 (2808): Guest Log:     "pilotErrorCode": 0,
2025-04-15 20:04:06 (2808): Guest Log:     "pilotErrorDiag": "",
2025-04-15 20:04:06 (2808): Guest Log:  *** Listing of results directory ***
2025-04-15 20:04:06 (2808): Guest Log: total 198664
2025-04-15 20:04:06 (2808): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 15 07:06 pilot3.tar.gz
2025-04-15 20:04:06 (2808): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 15 07:09 queuedata.json
2025-04-15 20:04:06 (2808): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 15 07:10 runpilot2-wrapper.sh
2025-04-15 20:04:06 (2808): Guest Log: -rwxr-xr-x. 1 atlas atlas     11034 Apr 15 19:05 init_data.xml
2025-04-15 20:04:06 (2808): Guest Log: -rwxr-xr-x. 1 atlas atlas    508894 Apr 15 19:05 input.tar.gz
2025-04-15 20:04:06 (2808): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 15 19:05 start_atlas.sh
2025-04-15 20:04:06 (2808): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 15 19:05 EVNT.44075481._000989.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 20:04:06 (2808): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 15 19:05 pandaJob.out
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas       424 Apr 15 19:05 setup.sh.local
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas    983993 Apr 15 19:07 agis_schedconf.cvmfs.json
2025-04-15 20:04:06 (2808): Guest Log: drwx------. 4 atlas atlas      4096 Apr 15 19:07 pilot3
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas 196469772 Apr 16 00:02 HITS.44075483._025369.pool.root.1
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas      1029 Apr 16 00:02 memory_monitor_summary.json
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 00:03 agis_ddmendpoints.agis.ALL.json
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas    337772 Apr 16 00:03 log.44075483._025369.job.log.tgz.1
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 00:03 pilot_heartbeat.json
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas      7720 Apr 16 00:03 heartbeat.json
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 16 00:04 pilotlog.txt
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas   1255030 Apr 16 00:04 log.44075483._025369.job.log.1
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 00:04 output.list
2025-04-15 20:04:06 (2808): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 00:04 runtime_log
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas   1607680 Apr 16 00:04 result.tar.gz
2025-04-15 20:04:06 (2808): Guest Log: -rw-r--r--. 1 atlas atlas     10906 Apr 16 00:04 runtime_log.err
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas       647 Apr 16 00:04 JZVLDmAcpO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmijXLDmLlsgnm.diag
2025-04-15 20:04:06 (2808): Guest Log: Looking for outputfile HITS.44075483._025369.pool.root.1
2025-04-15 20:04:06 (2808): Guest Log: HITS file was successfully produced
2025-04-15 20:04:06 (2808): Guest Log: -rw-------. 1 atlas atlas 196469772 Apr 16 00:02 /home/atlas/RunAtlas/HITS.44075483._025369.pool.root.1
2025-04-15 20:04:08 (2808): Guest Log: Successfully finished the ATLAS job!
2025-04-15 20:04:08 (2808): Guest Log: Copying the results back to the shared directory!
2025-04-15 20:04:08 (2808): Guest Log:  *** Contents of shared directory: ***
2025-04-15 20:04:09 (2808): Guest Log: total 414636
2025-04-15 20:04:09 (2808): Guest Log: -rwxrwxrwx. 1 root root 225958217 Apr 15 19:04 ATLAS.root_0
2025-04-15 20:04:09 (2808): Guest Log: -rwxrwxrwx. 1 root root 196469772 Apr 16 00:04 HITS.pool.root.1
2025-04-15 20:04:09 (2808): Guest Log: -rwxrwxrwx. 1 root root     11034 Apr 15 19:04 init_data.xml
2025-04-15 20:04:09 (2808): Guest Log: -rwxrwxrwx. 1 root root    508894 Apr 15 19:03 input.tar.gz
2025-04-15 20:04:09 (2808): Guest Log: -rwxrwxrwx. 1 root root   1607680 Apr 16 00:04 result.tar.gz
2025-04-15 20:04:09 (2808): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 15 19:03 start_atlas.sh
2025-04-15 20:04:09 (2808): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 20:04:09 (2808): VM Completion File Detected.
2025-04-15 20:04:09 (2808): Powering off VM.
2025-04-15 20:04:10 (2808): Successfully stopped VM.
2025-04-15 20:04:10 (2808): Deregistering VM. (boinc_77d0ac3e26044a71, slot#3)
2025-04-15 20:04:10 (2808): Removing network bandwidth throttle group from VM.
2025-04-15 20:04:10 (2808): Removing VM from VirtualBox.
20:04:15 (2808): called boinc_finish(0)

</stderr_txt>
]]>

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