Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:07:52 (29776): wrapper (7.7.26015): starting
13:07:52 (29776): wrapper: running run_atlas (--nthreads 12)
[2025-04-15 13:07:52] Arguments: --nthreads 12
[2025-04-15 13:07:52] Threads: 12
[2025-04-15 13:07:52] Checking for CVMFS
[2025-04-15 13:07:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 13:07:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 13:07:52] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 13:07:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 13:07:53] 2.11.2.0 25724 179047 104840 144896 0 361 11895483 18432001 4397 130560 0 18507962 99.254 42428005 37075 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-15 13:07:53] CVMFS is ok
[2025-04-15 13:07:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 13:07:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 13:07:53] Further information can be found at the LHC@home message board.
[2025-04-15 13:07:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 13:07:53] Checking for apptainer binary...
[2025-04-15 13:07:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 13:07:53] Running /usr/bin/apptainer --version
[2025-04-15 13:07:53] apptainer version 1.3.2-1.el7
[2025-04-15 13:07:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 13:07:56] c-206-24.aglt2.org
[2025-04-15 13:07:56] apptainer works
[2025-04-15 13:07:56] Set ATHENA_PROC_NUMBER=12
[2025-04-15 13:07:56] Set ATHENA_CORE_NUMBER=12
[2025-04-15 13:07:56] Starting ATLAS job with PandaID=6603686893
[2025-04-15 13:07:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:27:12 (847): wrapper (7.7.26015): starting
13:27:12 (847): wrapper: running run_atlas (--nthreads 12)
[2025-04-15 13:27:12] Arguments: --nthreads 12
[2025-04-15 13:27:12] Threads: 12
[2025-04-15 13:27:12] This job has been restarted, cleaning up previous attempt
[2025-04-15 13:27:12] Checking for CVMFS
[2025-04-15 13:27:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 13:27:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 13:27:13] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 13:27:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 13:27:14] 2.11.2.0 25724 179066 100944 144897 1 47 11903735 18432001 5153 130560 0 18568217 99.256 42431691 37075 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-15 13:27:14] CVMFS is ok
[2025-04-15 13:27:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 13:27:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 13:27:14] Further information can be found at the LHC@home message board.
[2025-04-15 13:27:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 13:27:14] Checking for apptainer binary...
[2025-04-15 13:27:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 13:27:14] Running /usr/bin/apptainer --version
[2025-04-15 13:27:15] apptainer version 1.3.2-1.el7
[2025-04-15 13:27:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 13:27:18] c-206-24.aglt2.org
[2025-04-15 13:27:18] apptainer works
[2025-04-15 13:27:19] Set ATHENA_PROC_NUMBER=12
[2025-04-15 13:27:19] Set ATHENA_CORE_NUMBER=12
[2025-04-15 13:27:19] Starting ATLAS job with PandaID=6603686893
[2025-04-15 13:27:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-15 23:15:21]  *** The last 200 lines of the pilot log: ***
[2025-04-15 23:15:21] 2025-04-16 03:14:53,394 | INFO     | mean x: 1744755508.950791
[2025-04-15 23:15:21] 2025-04-16 03:14:53,394 | INFO     | mean y: 2627763.1036906852
[2025-04-15 23:15:21] 2025-04-16 03:14:53,394 | INFO     | -- intersect: -15115674412.010523
[2025-04-15 23:15:21] 2025-04-16 03:14:53,395 | INFO     | intersect: -15115674412.010523
[2025-04-15 23:15:21] 2025-04-16 03:14:53,396 | INFO     | chi2: 6.14902788026352
[2025-04-15 23:15:21] 2025-04-16 03:14:53,396 | INFO     | current chi2=6.14902788026352 (change=28.02404805641067 %)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,397 | INFO     | sum of square deviations: 55639056623.891655
[2025-04-15 23:15:21] 2025-04-16 03:14:53,408 | INFO     | sum of deviations: 490401702350.23486
[2025-04-15 23:15:21] 2025-04-16 03:14:53,409 | INFO     | mean x: 1744755356.4556737
[2025-04-15 23:15:21] 2025-04-16 03:14:53,409 | INFO     | mean y: 2627288.629432624
[2025-04-15 23:15:21] 2025-04-16 03:14:53,409 | INFO     | -- intersect: -15375616860.519955
[2025-04-15 23:15:21] 2025-04-16 03:14:53,409 | INFO     | intersect: -15375616860.519955
[2025-04-15 23:15:21] 2025-04-16 03:14:53,410 | INFO     | chi2: 6.148962684448775
[2025-04-15 23:15:21] 2025-04-16 03:14:53,410 | INFO     | current chi2=6.148962684448775 (change=0.001060262142481505 %)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,411 | INFO     | right removable region: 563
[2025-04-15 23:15:21] 2025-04-16 03:14:53,412 | INFO     | sum of square deviations: 57131397104.81187
[2025-04-15 23:15:21] 2025-04-16 03:14:53,423 | INFO     | sum of deviations: 194785068632.42883
[2025-04-15 23:15:21] 2025-04-16 03:14:53,424 | INFO     | mean x: 1744755813.954306
[2025-04-15 23:15:21] 2025-04-16 03:14:53,424 | INFO     | mean y: 2633389.4780316344
[2025-04-15 23:15:21] 2025-04-16 03:14:53,424 | INFO     | -- intersect: -5945976275.0893135
[2025-04-15 23:15:21] 2025-04-16 03:14:53,424 | INFO     | intersect: -5945976275.0893135
[2025-04-15 23:15:21] 2025-04-16 03:14:53,425 | INFO     | chi2: 5.311714932274159
[2025-04-15 23:15:21] 2025-04-16 03:14:53,425 | INFO     | current chi2=5.311714932274159 (change=37.825011343577394 %)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,426 | INFO     | sum of square deviations: 55638533730.218
[2025-04-15 23:15:21] 2025-04-16 03:14:53,438 | INFO     | sum of deviations: 69775295462.54239
[2025-04-15 23:15:21] 2025-04-16 03:14:53,438 | INFO     | mean x: 1744755966.462766
[2025-04-15 23:15:21] 2025-04-16 03:14:53,439 | INFO     | mean y: 2646157.54964539
[2025-04-15 23:15:21] 2025-04-16 03:14:53,439 | INFO     | -- intersect: -2185421264.5767965
[2025-04-15 23:15:21] 2025-04-16 03:14:53,439 | INFO     | intersect: -2185421264.5767965
[2025-04-15 23:15:21] 2025-04-16 03:14:53,440 | INFO     | chi2: 3.8148909156200688
[2025-04-15 23:15:21] 2025-04-16 03:14:53,440 | INFO     | current chi2=3.8148909156200688 (change=28.17967522239073 %)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,441 | INFO     | sum of square deviations: 54171903405.5421
[2025-04-15 23:15:21] 2025-04-16 03:14:53,452 | INFO     | sum of deviations: -36097581028.13954
[2025-04-15 23:15:21] 2025-04-16 03:14:53,453 | INFO     | mean x: 1744756118.9713774
[2025-04-15 23:15:21] 2025-04-16 03:14:53,453 | INFO     | mean y: 2657158.11627907
[2025-04-15 23:15:21] 2025-04-16 03:14:53,453 | INFO     | -- intersect: 1165279687.8697417
[2025-04-15 23:15:21] 2025-04-16 03:14:53,453 | INFO     | intersect: 1165279687.8697417
[2025-04-15 23:15:21] 2025-04-16 03:14:53,454 | INFO     | chi2: 2.693476305731558
[2025-04-15 23:15:21] 2025-04-16 03:14:53,454 | INFO     | current chi2=2.693476305731558 (change=29.395718899769307 %)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,455 | INFO     | sum of square deviations: 52731273568.28098
[2025-04-15 23:15:21] 2025-04-16 03:14:53,466 | INFO     | sum of deviations: -72789861349.86276
[2025-04-15 23:15:21] 2025-04-16 03:14:53,466 | INFO     | mean x: 1744756271.4801445
[2025-04-15 23:15:21] 2025-04-16 03:14:53,467 | INFO     | mean y: 2661035.285198556
[2025-04-15 23:15:21] 2025-04-16 03:14:53,467 | INFO     | -- intersect: 2411109731.785805
[2025-04-15 23:15:21] 2025-04-16 03:14:53,467 | INFO     | intersect: 2411109731.785805
[2025-04-15 23:15:21] 2025-04-16 03:14:53,468 | INFO     | chi2: 2.5465884025956167
[2025-04-15 23:15:21] 2025-04-16 03:14:53,468 | INFO     | current chi2=2.5465884025956167 (change=5.45346928886556 %)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,468 | INFO     | left removable region: 40
[2025-04-15 23:15:21] 2025-04-16 03:14:53,469 | INFO     | sum of square deviations: 44366344186.95215
[2025-04-15 23:15:21] 2025-04-16 03:14:53,479 | INFO     | sum of deviations: 44156994157.177864
[2025-04-15 23:15:21] 2025-04-16 03:14:53,480 | INFO     | mean x: 1744756546.0095603
[2025-04-15 23:15:21] 2025-04-16 03:14:53,480 | INFO     | mean y: 2674491.1644359464
[2025-04-15 23:15:21] 2025-04-16 03:14:53,480 | INFO     | -- intersect: -1733849128.7037048
[2025-04-15 23:15:21] 2025-04-16 03:14:53,480 | INFO     | intersect: -1733849128.7037048
[2025-04-15 23:15:21] 2025-04-16 03:14:53,481 | INFO     | chi2: 0.008760367406527074
[2025-04-15 23:15:21] 2025-04-16 03:14:53,481 | INFO     | -- intersect: -1733849128.7037048
[2025-04-15 23:15:21] 2025-04-16 03:14:53,481 | INFO     | current memory leak: 1.00 B/s (using 523 data points, chi2=0.01)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,482 | INFO     | ..............................
[2025-04-15 23:15:21] 2025-04-16 03:14:53,483 | INFO     | . Timing measurements:
[2025-04-15 23:15:21] 2025-04-16 03:14:53,483 | INFO     | . get job = 0 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,483 | INFO     | . initial setup = 2 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,483 | INFO     | . payload setup = 33 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,483 | INFO     | . stage-in = 0 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,483 | INFO     | . payload execution = 35030 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,484 | INFO     | . stage-out = 20 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,484 | INFO     | . log creation = 6 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,484 | INFO     | ..............................
[2025-04-15 23:15:21] 2025-04-16 03:14:53,783 | INFO     | 
[2025-04-15 23:15:21] 2025-04-16 03:14:53,783 | INFO     | job summary report
[2025-04-15 23:15:21] 2025-04-16 03:14:53,783 | INFO     | --------------------------------------------------
[2025-04-15 23:15:21] 2025-04-16 03:14:53,783 | INFO     | PanDA job id: 6603686893
[2025-04-15 23:15:21] 2025-04-16 03:14:53,784 | INFO     | task id: 44075483
[2025-04-15 23:15:21] 2025-04-16 03:14:53,784 | INFO     | errors: (none)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,784 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-15 23:15:21] 2025-04-16 03:14:53,784 | INFO     | pilot state: finished 
[2025-04-15 23:15:21] 2025-04-16 03:14:53,784 | INFO     | transexitcode: 0
[2025-04-15 23:15:21] 2025-04-16 03:14:53,784 | INFO     | exeerrorcode: 0
[2025-04-15 23:15:21] 2025-04-16 03:14:53,784 | INFO     | exeerrordiag: 
[2025-04-15 23:15:21] 2025-04-16 03:14:53,785 | INFO     | exitcode: 0
[2025-04-15 23:15:21] 2025-04-16 03:14:53,785 | INFO     | exitmsg: OK
[2025-04-15 23:15:21] 2025-04-16 03:14:53,785 | INFO     | cpuconsumptiontime: 94098 s
[2025-04-15 23:15:21] 2025-04-16 03:14:53,785 | INFO     | nevents: 400
[2025-04-15 23:15:21] 2025-04-16 03:14:53,785 | INFO     | neventsw: 0
[2025-04-15 23:15:21] 2025-04-16 03:14:53,785 | INFO     | pid: 13523
[2025-04-15 23:15:21] 2025-04-16 03:14:53,786 | INFO     | pgrp: 13523
[2025-04-15 23:15:21] 2025-04-16 03:14:53,786 | INFO     | corecount: 12
[2025-04-15 23:15:21] 2025-04-16 03:14:53,786 | INFO     | event service: False
[2025-04-15 23:15:21] 2025-04-16 03:14:53,786 | INFO     | sizes: {0: 2416538, 1: 2417223, 2: 2417422, 13: 2417422, 20: 2417684, 24: 2417712, 35073: 2457314, 35077: 2457313, 35099: 2466366, 35171: 2466480}
[2025-04-15 23:15:21] 2025-04-16 03:14:53,786 | INFO     | --------------------------------------------------
[2025-04-15 23:15:21] 2025-04-16 03:14:53,786 | INFO     | 
[2025-04-15 23:15:21] 2025-04-16 03:14:53,787 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-15 23:15:21] 2025-04-16 03:14:53,988 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,988 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,988 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,988 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,989 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,989 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,989 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,989 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,989 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,990 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,990 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,990 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,990 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,990 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,990 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,991 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,991 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,991 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-15 23:15:21] 2025-04-16 03:14:53,991 | INFO     | job 6603686893 has completed (purged errors)
[2025-04-15 23:15:21] 2025-04-16 03:14:53,991 | INFO     | overall cleanup function is called
[2025-04-15 23:15:21] 2025-04-16 03:14:55,000 | INFO     | --- collectZombieJob: --- 10, [13523]
[2025-04-15 23:15:21] 2025-04-16 03:14:55,001 | INFO     | zombie collector waiting for pid 13523
[2025-04-15 23:15:21] 2025-04-16 03:14:55,001 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-15 23:15:21] 2025-04-16 03:14:55,001 | INFO     | collected zombie processes
[2025-04-15 23:15:21] 2025-04-16 03:14:55,001 | INFO     | will attempt to kill all subprocesses of pid=13523
[2025-04-15 23:15:21] 2025-04-16 03:14:57,842 | INFO     | process IDs to be killed: [13523] (in reverse order)
[2025-04-15 23:15:21] 2025-04-16 03:14:58,616 | WARNING  | found no corresponding commands to process id(s)
[2025-04-15 23:15:21] 2025-04-16 03:14:58,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-15 23:15:21] 2025-04-16 03:14:58,644 | INFO     | did not find any defunct processes belonging to 13523
[2025-04-15 23:15:21] 2025-04-16 03:14:58,733 | INFO     | did not find any defunct processes belonging to 13523
[2025-04-15 23:15:21] 2025-04-16 03:14:58,734 | INFO     | ready for new job
[2025-04-15 23:15:21] 2025-04-16 03:14:58,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-15 23:15:21] 2025-04-16 03:14:58,767 | INFO     | **************************************
[2025-04-15 23:15:21] 2025-04-16 03:14:58,768 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-15 23:15:21] 2025-04-16 03:14:58,768 | INFO     | **************************************
[2025-04-15 23:15:21] 2025-04-16 03:14:58,768 | INFO     | 
[2025-04-15 23:15:21] 2025-04-16 03:14:58,769 | INFO     | architecture information:
[2025-04-15 23:15:21] 2025-04-16 03:14:58,770 | INFO     | executing command: cat /etc/os-release
[2025-04-15 23:15:21] 2025-04-16 03:14:58,798 | INFO     | cat /etc/os-release:
[2025-04-15 23:15:21] NAME="CentOS Linux"
[2025-04-15 23:15:21] VERSION="7 (Core)"
[2025-04-15 23:15:21] ID="centos"
[2025-04-15 23:15:21] ID_LIKE="rhel fedora"
[2025-04-15 23:15:21] VERSION_ID="7"
[2025-04-15 23:15:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-15 23:15:21] ANSI_COLOR="0;31"
[2025-04-15 23:15:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-15 23:15:21] HOME_URL="https://www.centos.org/"
[2025-04-15 23:15:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-15 23:15:21] 
[2025-04-15 23:15:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-15 23:15:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-15 23:15:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-15 23:15:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-15 23:15:21] 
[2025-04-15 23:15:21] 2025-04-16 03:14:58,799 | INFO     | **************************************
[2025-04-15 23:15:21] 2025-04-16 03:14:59,303 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-15 23:15:21] 2025-04-16 03:14:59,694 | INFO     | sufficient remaining disk space (29201793024 B)
[2025-04-15 23:15:21] 2025-04-16 03:14:59,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-15 23:15:21] 2025-04-16 03:14:59,722 | INFO     | current server update state: UPDATING_FINAL
[2025-04-15 23:15:21] 2025-04-16 03:14:59,722 | INFO     | update_server=False
[2025-04-15 23:15:21] 2025-04-16 03:14:59,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-15 23:15:21] 2025-04-16 03:14:59,747 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-15 23:15:21] 2025-04-16 03:14:59,748 | INFO     | aborting loop
[2025-04-15 23:15:21] 2025-04-16 03:14:59,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-15 23:15:21] 2025-04-16 03:14:59,769 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-15 23:15:21] 2025-04-16 03:14:59,770 | INFO     | found 0 job(s) in 20 queues
[2025-04-15 23:15:21] 2025-04-16 03:14:59,770 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-15 23:15:21] 2025-04-16 03:14:59,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-15 23:15:21] 2025-04-16 03:14:59,915 | INFO     | all data control threads have been joined
[2025-04-15 23:15:21] 2025-04-16 03:15:00,112 | INFO     | all job control threads have been joined
[2025-04-15 23:15:21] 2025-04-16 03:15:00,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-15 23:15:21] 2025-04-16 03:15:00,729 | INFO     | [job] retrieve thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:00,749 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-15 23:15:21] 2025-04-16 03:15:00,754 | INFO     | [job] job monitor thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:00,771 | INFO     | [job] queue monitor thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:00,922 | INFO     | [data] control thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:00,941 | INFO     | [payload] execute_payloads thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:00,959 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:00,971 | INFO     | [payload] validate_pre thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:01,062 | INFO     | all payload control threads have been joined
[2025-04-15 23:15:21] 2025-04-16 03:15:01,119 | INFO     | [job] control thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:01,280 | INFO     | [job] validate thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:01,631 | INFO     | [payload] failed_post thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:01,642 | INFO     | [payload] validate_post thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:01,931 | INFO     | [job] create_data_payload thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:01,944 | INFO     | [data] copytool_in thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:02,069 | INFO     | [payload] control thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:02,310 | INFO     | [data] copytool_out thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:04,757 | INFO     | [data] queue_monitor thread has finished
[2025-04-15 23:15:21] 2025-04-16 03:15:05,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330209171264)>', '<ExcThread(monitor, started 140329776826112)>']
[2025-04-15 23:15:21] 2025-04-16 03:15:05,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-15 23:15:21] 2025-04-16 03:15:05,810 | INFO     | [monitor] control thread has ended
[2025-04-15 23:15:21] 2025-04-16 03:15:10,439 | INFO     | all workflow threads have been joined
[2025-04-15 23:15:21] 2025-04-16 03:15:10,440 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-15 23:15:21] 2025-04-16 03:15:10,462 | INFO     | traces error code: 0
[2025-04-15 23:15:21] 2025-04-16 03:15:10,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-15 23:15:21] 2025-04-16 03:15:13,144 [wrapper] ==== pilot stdout END ====
[2025-04-15 23:15:21] 2025-04-16 03:15:13,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-15 23:15:21] 2025-04-16 03:15:13,289 [wrapper] pilotpid: 6800
[2025-04-15 23:15:21] 2025-04-16 03:15:13,359 [wrapper] Pilot exit status: 0
[2025-04-15 23:15:21] 2025-04-16 03:15:14,009 [wrapper] pandaids: 6603686893 6603686893
[2025-04-15 23:15:21] 2025-04-16 03:15:14,839 [wrapper] cleanup supervisor_pilot 29478 6801
[2025-04-15 23:15:21] 2025-04-16 03:15:14,919 [wrapper] Test setup, not cleaning
[2025-04-15 23:15:21] 2025-04-16 03:15:15,000 [wrapper] apfmon messages muted
[2025-04-15 23:15:21] 2025-04-16 03:15:15,060 [wrapper] ==== wrapper stdout END ====
[2025-04-15 23:15:21] 2025-04-16 03:15:15,139 [wrapper] ==== wrapper stderr END ====
[2025-04-15 23:15:21]  *** Error codes and diagnostics ***
[2025-04-15 23:15:21]     "exeErrorCode": 0,
[2025-04-15 23:15:21]     "exeErrorDiag": "",
[2025-04-15 23:15:21]     "pilotErrorCode": 0,
[2025-04-15 23:15:21]     "pilotErrorDiag": "",
[2025-04-15 23:15:21]  *** Listing of results directory ***
[2025-04-15 23:15:21] total 637932
[2025-04-15 23:15:21] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas    495897 Apr 15 09:25 pilot3.tar.gz
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas      5111 Apr 15 09:30 queuedata.json
[2025-04-15 23:15:21] -rwx------ 1 boincer umatlas     37140 Apr 15 09:31 runpilot2-wrapper.sh
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas       100 Apr 15 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-15 23:15:21] -rwxr-xr-x 1 boincer umatlas      7986 Apr 15 13:07 run_atlas
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas       105 Apr 15 13:07 job.xml
[2025-04-15 23:15:21] -rw-r--r-- 3 boincer umatlas 222223450 Apr 15 13:07 EVNT.44075481._001107.pool.root.1
[2025-04-15 23:15:21] -rw-r--r-- 3 boincer umatlas 222223450 Apr 15 13:07 ATLAS.root_0
[2025-04-15 23:15:21] -rw-r--r-- 2 boincer umatlas     17569 Apr 15 13:07 start_atlas.sh
[2025-04-15 23:15:21] drwxrwx--x 2 boincer umatlas      4096 Apr 15 13:07 shared
[2025-04-15 23:15:21] -rw-r--r-- 2 boincer umatlas    508894 Apr 15 13:07 input.tar.gz
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas         0 Apr 15 13:07 boinc_lockfile
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas      2579 Apr 15 13:27 pandaJob.out
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas       424 Apr 15 13:27 setup.sh.local
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas    984001 Apr 15 13:28 agis_schedconf.cvmfs.json
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas 197995382 Apr 15 23:07 HITS.44075483._028325.pool.root.1
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas       531 Apr 15 23:09 boinc_task_state.xml
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas      5865 Apr 15 23:10 init_data.xml
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas      1062 Apr 15 23:13 memory_monitor_summary.json
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas   1603529 Apr 15 23:13 agis_ddmendpoints.agis.ALL.json
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas    650797 Apr 15 23:13 log.44075483._028325.job.log.tgz.1
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas      7785 Apr 15 23:14 heartbeat.json
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas        96 Apr 15 23:14 pilot_heartbeat.json
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas      4476 Apr 15 23:15 pilotlog.txt
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas   2829731 Apr 15 23:15 log.44075483._028325.job.log.1
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas       357 Apr 15 23:15 output.list
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas       620 Apr 15 23:15 runtime_log
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas   3502080 Apr 15 23:15 result.tar.gz
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas     11101 Apr 15 23:15 runtime_log.err
[2025-04-15 23:15:21] -rw------- 1 boincer umatlas       788 Apr 15 23:15 p3OKDmhYvO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm2U1KDmJg44km.diag
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas      8192 Apr 15 23:15 boinc_mmap_file
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas        28 Apr 15 23:15 wrapper_checkpoint.txt
[2025-04-15 23:15:21] -rw-r--r-- 1 boincer umatlas     23031 Apr 15 23:15 stderr.txt
[2025-04-15 23:15:22] HITS file was successfully produced:
[2025-04-15 23:15:22] -rw------- 1 boincer umatlas 197995382 Apr 15 23:07 shared/HITS.pool.root.1
[2025-04-15 23:15:22]  *** Contents of shared directory: ***
[2025-04-15 23:15:22] total 414316
[2025-04-15 23:15:22] -rw-r--r-- 3 boincer umatlas 222223450 Apr 15 13:07 ATLAS.root_0
[2025-04-15 23:15:22] -rw-r--r-- 2 boincer umatlas     17569 Apr 15 13:07 start_atlas.sh
[2025-04-15 23:15:22] -rw-r--r-- 2 boincer umatlas    508894 Apr 15 13:07 input.tar.gz
[2025-04-15 23:15:22] -rw------- 1 boincer umatlas 197995382 Apr 15 23:07 HITS.pool.root.1
[2025-04-15 23:15:22] -rw------- 1 boincer umatlas   3502080 Apr 15 23:15 result.tar.gz
23:15:23 (847): run_atlas exited; CPU time 94594.697870
23:15:23 (847): called boinc_finish(0)

</stderr_txt>
]]>

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