Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 08:59:48 (12840): Detected: vboxwrapper 26206
2025-04-15 08:59:48 (12840): Detected: BOINC client v8.0.4
2025-04-15 09:00:19 (12840): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-15 09:00:39 (12840): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 09:01:23 (12840): Create VM. (boinc_c1146cfd61ab6b33, slot#7)
2025-04-15 09:01:49 (12840): Setting Memory Size for VM. (4300MB)
2025-04-15 09:02:02 (12840): Setting CPU Count for VM. (3)
2025-04-15 09:02:20 (12840): Setting Chipset Options for VM.
2025-04-15 09:02:37 (12840): Setting Graphics Controller Options for VM.
2025-04-15 09:02:42 (12840): Setting Boot Options for VM.
2025-04-15 09:02:49 (12840): Setting Network Configuration for NAT.
2025-04-15 09:02:49 (12840): Enabling VM Network Access.
2025-04-15 09:02:49 (12840): Disabling USB Support for VM.
2025-04-15 09:02:49 (12840): Disabling COM Port Support for VM.
2025-04-15 09:02:50 (12840): Disabling LPT Port Support for VM.
2025-04-15 09:02:50 (12840): Disabling Audio Support for VM.
2025-04-15 09:02:50 (12840): Disabling Clipboard Support for VM.
2025-04-15 09:02:51 (12840): Disabling Drag and Drop Support for VM.
2025-04-15 09:02:51 (12840): Adding storage controller(s) to VM.
2025-04-15 09:02:51 (12840): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 09:02:55 (12840): Adding VirtualBox Guest Additions to VM.
2025-04-15 09:02:55 (12840): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 09:02:55 (12840): forwarding host port 55902 to guest port 80
2025-04-15 09:02:55 (12840): Enabling remote desktop for VM.
2025-04-15 09:02:56 (12840): Enabling shared directory for VM.
2025-04-15 09:02:57 (12840): Starting VM using VBoxManage interface. (boinc_c1146cfd61ab6b33, slot#7)
2025-04-15 09:03:07 (12840): Successfully started VM. (PID = '5404')
2025-04-15 09:03:07 (12840): Reporting VM Process ID to BOINC.
2025-04-15 09:03:07 (12840): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-15 09:03:07 (12840): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 09:03:07 (12840): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 09:03:07 (12840): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 09:03:07 (12840): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 09:03:07 (12840): Detected: Web Application Enabled (http://localhost:55902)
2025-04-15 09:03:07 (12840): Detected: Remote Desktop Enabled (localhost:55911)
2025-04-15 09:03:07 (12840): Preference change detected
2025-04-15 09:03:07 (12840): Setting CPU throttle for VM. (100%)
2025-04-15 09:03:07 (12840): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 09:03:11 (12840): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 09:03:11 (12840): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 09:03:13 (12840): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 09:03:13 (12840): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 09:03:13 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 09:03:14 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 09:03:14 (12840): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 09:03:14 (12840): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 09:03:22 (12840): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 09:03:22 (12840): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 09:03:35 (12840): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.000279 main     Log opened 2025-04-15T09:03:33.812820000Z
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.000520 main     OS Product: Linux
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.000589 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.000664 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.000723 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.000725 main     Process ID: 1295
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.000755 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 09:03:35 (12840): Guest Log: 00:00:00.003463 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 09:03:35 (12840): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 09:03:35 (12840): Guest Log: [INFO] Mounting shared directory
2025-04-15 09:03:35 (12840): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 09:03:43 (12840): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 09:03:43 (12840): Guest Log: [INFO] Detected branch: prod
2025-04-15 09:03:43 (12840): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 09:03:43 (12840): Guest Log: Copying input files
2025-04-15 09:03:45 (12840): Guest Log: 00:00:10.007614 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 416 133 000ns (GuestNow=1 744 733 025 235 424 000 ns GuestLast=1 744 707 813 819 291 000 ns fSetTimeLastLoop=true )
2025-04-15 09:03:46 (12840): Guest Log: Copied input files into RunAtlas.
2025-04-15 09:03:46 (12840): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-15 09:03:46 (12840): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-15 09:03:46 (12840): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-15 09:03:46 (12840): Guest Log: Further information can be found at the LHC@home message board.
2025-04-15 09:03:58 (12840): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 09:03:59 (12840): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 09:03:59 (12840): Guest Log: 2.6.3.0 1573 0 30128 144895 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-15 09:04:00 (12840): Guest Log: copied the webapp to /var/www
2025-04-15 09:04:00 (12840): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-15 09:04:00 (12840): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-15 09:04:01 (12840): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 09:04:01 (12840): Guest Log:  *** Starting ATLAS job. (PandaID=6600996749 taskID=44075164) ***
2025-04-15 10:52:08 (12840): Status Report: Elapsed Time: '6000.419340'
2025-04-15 10:52:09 (12840): Status Report: CPU Time: '14344.203125'
2025-04-15 12:42:35 (12840): Status Report: Elapsed Time: '12000.723898'
2025-04-15 12:42:36 (12840): Status Report: CPU Time: '34186.671875'
2025-04-15 14:32:37 (12840): Status Report: Elapsed Time: '18001.595770'
2025-04-15 14:32:37 (12840): Status Report: CPU Time: '53914.953125'
2025-04-15 16:22:48 (12840): Status Report: Elapsed Time: '24001.607435'
2025-04-15 16:22:48 (12840): Status Report: CPU Time: '73653.906250'
2025-04-15 18:14:07 (12840): Status Report: Elapsed Time: '30002.103844'
2025-04-15 18:14:07 (12840): Status Report: CPU Time: '93688.343750'
2025-04-15 19:22:05 (12840): Guest Log:  *** Job finished ***
2025-04-15 19:22:05 (12840): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:21:55,892 | INFO     | [job] queue monitor thread has finished
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:21:56,903 [wrapper] supervise_pilot (15 min periods counter: 42)
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:21:57,787 | INFO     | [data] queue_monitor thread has finished
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:21:58,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628197582656)>', '<ExcThread(monitor, started 139627599996672)>']
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:21:58,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:21:58,980 | INFO     | [monitor] control thread has ended
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,823 | INFO     | all workflow threads have been joined
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,824 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,824 | INFO     | traces error code: 0
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,957 [wrapper] ==== pilot stdout END ====
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,963 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,968 [wrapper] pilotpid: 5922
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:03,974 [wrapper] Pilot exit status: 0
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:04,181 [wrapper] pandaids: 6600996749
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:04,230 [wrapper] cleanup supervisor_pilot 19622 5923
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:04,240 [wrapper] Test setup, not cleaning
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:04,246 [wrapper] apfmon messages muted
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:04,253 [wrapper] ==== wrapper stdout END ====
2025-04-15 19:22:05 (12840): Guest Log: 2025-04-16 02:22:04,259 [wrapper] ==== wrapper stderr END ====
2025-04-15 19:22:05 (12840): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 19:22:05 (12840): Guest Log:     "exeErrorCode": 0,
2025-04-15 19:22:05 (12840): Guest Log:     "exeErrorDiag": "",
2025-04-15 19:22:05 (12840): Guest Log:     "pilotErrorCode": 0,
2025-04-15 19:22:05 (12840): Guest Log:     "pilotErrorDiag": "",
2025-04-15 19:22:05 (12840): Guest Log:  *** Listing of results directory ***
2025-04-15 19:22:05 (12840): Guest Log: total 201968
2025-04-15 19:22:05 (12840): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 13 10:16 pilot3.tar.gz
2025-04-15 19:22:05 (12840): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 13 10:32 queuedata.json
2025-04-15 19:22:05 (12840): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 13 10:32 runpilot2-wrapper.sh
2025-04-15 19:22:05 (12840): Guest Log: -rwxr-xr-x. 1 atlas atlas      9082 Apr 15 16:03 init_data.xml
2025-04-15 19:22:05 (12840): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Apr 15 16:03 input.tar.gz
2025-04-15 19:22:05 (12840): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 15 16:03 start_atlas.sh
2025-04-15 19:22:05 (12840): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 15 16:03 EVNT.44075162._002192.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 19:22:05 (12840): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 15 16:04 pandaJob.out
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas       424 Apr 15 16:04 setup.sh.local
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas    984001 Apr 15 16:06 agis_schedconf.cvmfs.json
2025-04-15 19:22:05 (12840): Guest Log: drwx------. 4 atlas atlas      4096 Apr 15 16:06 pilot3
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas 195968142 Apr 16 02:20 HITS.44075164._056286.pool.root.1
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 02:21 pilot_heartbeat.json
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas      1029 Apr 16 02:21 memory_monitor_summary.json
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 02:21 agis_ddmendpoints.agis.ALL.json
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas    519048 Apr 16 02:21 log.44075164._056286.job.log.tgz.1
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas      7695 Apr 16 02:21 heartbeat.json
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 16 02:22 pilotlog.txt
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas   3015659 Apr 16 02:22 log.44075164._056286.job.log.1
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 02:22 output.list
2025-04-15 19:22:05 (12840): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 02:22 runtime_log
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas   3553280 Apr 16 02:22 result.tar.gz
2025-04-15 19:22:05 (12840): Guest Log: -rw-r--r--. 1 atlas atlas     10923 Apr 16 02:22 runtime_log.err
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas       658 Apr 16 02:22 7jPNDmto9N7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJhTLDmQdY9Eo.diag
2025-04-15 19:22:05 (12840): Guest Log: Looking for outputfile HITS.44075164._056286.pool.root.1
2025-04-15 19:22:05 (12840): Guest Log: HITS file was successfully produced
2025-04-15 19:22:05 (12840): Guest Log: -rw-------. 1 atlas atlas 195968142 Apr 16 02:20 /home/atlas/RunAtlas/HITS.44075164._056286.pool.root.1
2025-04-15 19:22:07 (12840): Guest Log: Successfully finished the ATLAS job!
2025-04-15 19:22:07 (12840): Guest Log: Copying the results back to the shared directory!
2025-04-15 19:22:07 (12840): Guest Log:  *** Contents of shared directory: ***
2025-04-15 19:22:07 (12840): Guest Log: total 411056
2025-04-15 19:22:07 (12840): Guest Log: -rwxrwxrwx. 1 root root 220851348 Apr 15 15:59 ATLAS.root_0
2025-04-15 19:22:07 (12840): Guest Log: -rwxrwxrwx. 1 root root 195968142 Apr 16 02:22 HITS.pool.root.1
2025-04-15 19:22:07 (12840): Guest Log: -rwxrwxrwx. 1 root root      9082 Apr 15 15:59 init_data.xml
2025-04-15 19:22:07 (12840): Guest Log: -rwxrwxrwx. 1 root root    508887 Apr 15 15:57 input.tar.gz
2025-04-15 19:22:07 (12840): Guest Log: -rwxrwxrwx. 1 root root   3553280 Apr 16 02:22 result.tar.gz
2025-04-15 19:22:07 (12840): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 15 15:57 start_atlas.sh
2025-04-15 19:22:07 (12840): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 19:22:07 (12840): VM Completion File Detected.
2025-04-15 19:22:07 (12840): Powering off VM.
2025-04-15 19:22:08 (12840): Successfully stopped VM.
2025-04-15 19:22:08 (12840): Deregistering VM. (boinc_c1146cfd61ab6b33, slot#7)
2025-04-15 19:22:08 (12840): Removing network bandwidth throttle group from VM.
2025-04-15 19:22:08 (12840): Removing VM from VirtualBox.
19:22:14 (12840): called boinc_finish(0)

</stderr_txt>
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