Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:24:23 (3821382): wrapper (7.7.26015): starting
11:24:23 (3821382): wrapper: running run_atlas (--nthreads 8)
[2025-04-15 11:24:23] Arguments: --nthreads 8
[2025-04-15 11:24:23] Threads: 8
[2025-04-15 11:24:23] Checking for CVMFS
[2025-04-15 11:24:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 11:24:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 11:24:25] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 11:24:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 11:24:27] 2.12.6.0 2301809 67039 231156 144894 2 113 23068821 32935937 24772 130560 0 41451502 99.695 35192592 8324 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-15 11:24:27] CVMFS is ok
[2025-04-15 11:24:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 11:24:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 11:24:27] Further information can be found at the LHC@home message board.
[2025-04-15 11:24:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 11:24:27] Checking for apptainer binary...
[2025-04-15 11:24:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 11:24:27] Running /usr/bin/apptainer --version
[2025-04-15 11:24:28] apptainer version 1.4.0-1.el9
[2025-04-15 11:24:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 11:24:29] c6-12-25-2.aglt2.org
[2025-04-15 11:24:29] apptainer works
[2025-04-15 11:24:29] Set ATHENA_PROC_NUMBER=8
[2025-04-15 11:24:29] Set ATHENA_CORE_NUMBER=8
[2025-04-15 11:24:29] Starting ATLAS job with PandaID=6603684589
[2025-04-15 11:24:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-15 21:50:38]  *** The last 200 lines of the pilot log: ***
[2025-04-15 21:50:38] 2025-04-16 01:49:53,729 | INFO     | PID=3827707 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-04-15 21:50:38] 2025-04-16 01:49:53,730 | INFO     | .. there are 25 such processes running
[2025-04-15 21:50:38] 2025-04-16 01:49:55,898 | INFO     | monitor loop #1342: job 0:6603684589 is in state 'finished'
[2025-04-15 21:50:38] 2025-04-16 01:49:55,898 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 21:50:38] 2025-04-16 01:49:58,408 | INFO     | monitor loop #1343: job 0:6603684589 is in state 'finished'
[2025-04-15 21:50:38] 2025-04-16 01:49:58,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 21:50:38] 2025-04-16 01:50:00,914 | INFO     | monitor loop #1344: job 0:6603684589 is in state 'finished'
[2025-04-15 21:50:38] 2025-04-16 01:50:00,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 21:50:38] 2025-04-16 01:50:03,427 | INFO     | monitor loop #1345: job 0:6603684589 is in state 'finished'
[2025-04-15 21:50:38] 2025-04-16 01:50:03,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 21:50:38] 2025-04-16 01:50:05,958 | INFO     | monitor loop #1346: job 0:6603684589 is in state 'finished'
[2025-04-15 21:50:38] 2025-04-16 01:50:05,965 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 21:50:38] 2025-04-16 01:50:08,472 | INFO     | monitor loop #1347: job 0:6603684589 is in state 'finished'
[2025-04-15 21:50:38] 2025-04-16 01:50:08,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 21:50:38] 2025-04-16 01:50:09,328 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-15 21:50:38] 2025-04-16 01:50:09,329 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6603684589/memory_monitor_summary.json (trf name=prmon)
[2025-04-15 21:50:38] 2025-04-16 01:50:09,336 | INFO     | extracted standard info from prmon json
[2025-04-15 21:50:38] 2025-04-16 01:50:09,337 | INFO     | extracted standard memory fields from prmon json
[2025-04-15 21:50:38] 2025-04-16 01:50:09,337 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-15 21:50:38] 2025-04-16 01:50:09,338 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-15 21:50:38] 2025-04-16 01:50:09,338 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-15 21:50:38] 2025-04-16 01:50:09,377 | INFO     | fitting pss+swap vs Time
[2025-04-15 21:50:38] 2025-04-16 01:50:09,408 | INFO     | sum of square deviations: 69684928196.05124
[2025-04-15 21:50:38] 2025-04-16 01:50:09,574 | INFO     | sum of deviations: 758813451434.2623
[2025-04-15 21:50:38] 2025-04-16 01:50:09,574 | INFO     | mean x: 1744749566.8930922
[2025-04-15 21:50:38] 2025-04-16 01:50:09,575 | INFO     | mean y: 2342845.1578947366
[2025-04-15 21:50:38] 2025-04-16 01:50:09,575 | INFO     | -- intersect: -18996592434.187115
[2025-04-15 21:50:38] 2025-04-16 01:50:09,575 | INFO     | intersect: -18996592434.187115
[2025-04-15 21:50:38] 2025-04-16 01:50:09,596 | INFO     | chi2: 19.168596763293607
[2025-04-15 21:50:38] 2025-04-16 01:50:09,616 | INFO     | sum of square deviations: 67979889431.26724
[2025-04-15 21:50:38] 2025-04-16 01:50:09,736 | INFO     | sum of deviations: 937593409625.5371
[2025-04-15 21:50:38] 2025-04-16 01:50:09,736 | INFO     | mean x: 1744749414.4046435
[2025-04-15 21:50:38] 2025-04-16 01:50:09,736 | INFO     | mean y: 2358834.5223880596
[2025-04-15 21:50:38] 2025-04-16 01:50:09,737 | INFO     | -- intersect: -24061604288.686153
[2025-04-15 21:50:38] 2025-04-16 01:50:09,737 | INFO     | intersect: -24061604288.686153
[2025-04-15 21:50:38] 2025-04-16 01:50:09,759 | INFO     | chi2: 15.64547692328998
[2025-04-15 21:50:38] 2025-04-16 01:50:09,760 | INFO     | current chi2=15.64547692328998 (change=18.379643974514252 %)
[2025-04-15 21:50:38] 2025-04-16 01:50:09,760 | INFO     | right removable region: 602
[2025-04-15 21:50:38] 2025-04-16 01:50:09,782 | INFO     | sum of square deviations: 67979446574.87869
[2025-04-15 21:50:38] 2025-04-16 01:50:09,908 | INFO     | sum of deviations: 571595866230.9442
[2025-04-15 21:50:38] 2025-04-16 01:50:09,909 | INFO     | mean x: 1744749719.4013267
[2025-04-15 21:50:38] 2025-04-16 01:50:09,909 | INFO     | mean y: 2359577.5704809288
[2025-04-15 21:50:38] 2025-04-16 01:50:09,910 | INFO     | -- intersect: -14668129481.484907
[2025-04-15 21:50:38] 2025-04-16 01:50:09,910 | INFO     | intersect: -14668129481.484907
[2025-04-15 21:50:38] 2025-04-16 01:50:09,932 | INFO     | chi2: 15.145235355070174
[2025-04-15 21:50:38] 2025-04-16 01:50:09,933 | INFO     | current chi2=15.145235355070174 (change=20.98933718470129 %)
[2025-04-15 21:50:38] 2025-04-16 01:50:09,933 | INFO     | left removable region: 10
[2025-04-15 21:50:38] 2025-04-16 01:50:09,935 | INFO     | sum of square deviations: 64326315461.57967
[2025-04-15 21:50:38] 2025-04-16 01:50:10,056 | INFO     | sum of deviations: 634761338457.51
[2025-04-15 21:50:38] 2025-04-16 01:50:10,077 | INFO     | mean x: 1744749688.9239864
[2025-04-15 21:50:38] 2025-04-16 01:50:10,077 | INFO     | mean y: 2393176.766891892
[2025-04-15 21:50:38] 2025-04-16 01:50:10,077 | INFO     | -- intersect: -17214505379.7219
[2025-04-15 21:50:38] 2025-04-16 01:50:10,078 | INFO     | intersect: -17214505379.7219
[2025-04-15 21:50:38] 2025-04-16 01:50:10,080 | INFO     | chi2: 8.36608045662607
[2025-04-15 21:50:38] 2025-04-16 01:50:10,101 | INFO     | -- intersect: -17214505379.7219
[2025-04-15 21:50:38] 2025-04-16 01:50:10,101 | INFO     | current memory leak: 9.87 B/s (using 592 data points, chi2=8.37)
[2025-04-15 21:50:38] 2025-04-16 01:50:10,103 | INFO     | ..............................
[2025-04-15 21:50:38] 2025-04-16 01:50:10,104 | INFO     | . Timing measurements:
[2025-04-15 21:50:38] 2025-04-16 01:50:10,104 | INFO     | . get job = 0 s
[2025-04-15 21:50:38] 2025-04-16 01:50:10,104 | INFO     | . initial setup = 16 s
[2025-04-15 21:50:38] 2025-04-16 01:50:10,104 | INFO     | . payload setup = 79 s
[2025-04-15 21:50:38] 2025-04-16 01:50:10,125 | INFO     | . stage-in = 2 s
[2025-04-15 21:50:38] 2025-04-16 01:50:10,125 | INFO     | . payload execution = 37134 s
[2025-04-15 21:50:38] 2025-04-16 01:50:10,125 | INFO     | . stage-out = 21 s
[2025-04-15 21:50:38] 2025-04-16 01:50:10,126 | INFO     | . log creation = 1 s
[2025-04-15 21:50:38] 2025-04-16 01:50:10,126 | INFO     | ..............................
[2025-04-15 21:50:38] 2025-04-16 01:50:11,588 | INFO     | 
[2025-04-15 21:50:38] 2025-04-16 01:50:11,588 | INFO     | job summary report
[2025-04-15 21:50:38] 2025-04-16 01:50:11,589 | INFO     | --------------------------------------------------
[2025-04-15 21:50:38] 2025-04-16 01:50:11,589 | INFO     | PanDA job id: 6603684589
[2025-04-15 21:50:38] 2025-04-16 01:50:11,589 | INFO     | task id: 44075483
[2025-04-15 21:50:38] 2025-04-16 01:50:11,589 | INFO     | errors: (none)
[2025-04-15 21:50:38] 2025-04-16 01:50:11,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-15 21:50:38] 2025-04-16 01:50:11,590 | INFO     | pilot state: finished 
[2025-04-15 21:50:38] 2025-04-16 01:50:11,590 | INFO     | transexitcode: 0
[2025-04-15 21:50:38] 2025-04-16 01:50:11,590 | INFO     | exeerrorcode: 0
[2025-04-15 21:50:38] 2025-04-16 01:50:11,590 | INFO     | exeerrordiag: 
[2025-04-15 21:50:38] 2025-04-16 01:50:11,591 | INFO     | exitcode: 0
[2025-04-15 21:50:38] 2025-04-16 01:50:11,591 | INFO     | exitmsg: OK
[2025-04-15 21:50:38] 2025-04-16 01:50:11,591 | INFO     | cpuconsumptiontime: 111904 s
[2025-04-15 21:50:38] 2025-04-16 01:50:11,591 | INFO     | nevents: 400
[2025-04-15 21:50:38] 2025-04-16 01:50:11,610 | INFO     | neventsw: 0
[2025-04-15 21:50:38] 2025-04-16 01:50:11,610 | INFO     | pid: 3844231
[2025-04-15 21:50:38] 2025-04-16 01:50:11,610 | INFO     | pgrp: 3844231
[2025-04-15 21:50:38] 2025-04-16 01:50:11,611 | INFO     | corecount: 8
[2025-04-15 21:50:38] 2025-04-16 01:50:11,611 | INFO     | event service: False
[2025-04-15 21:50:38] 2025-04-16 01:50:11,611 | INFO     | sizes: {0: 2416538, 1: 2417223, 2: 2417223, 3: 2417251, 5: 2417450, 6: 2417506, 17: 2417662, 31: 2417690, 44: 2417718, 56: 2417746, 63: 2417980, 69: 2418288, 37221
[2025-04-15 21:50:38] 2025-04-16 01:50:11,611 | INFO     | --------------------------------------------------
[2025-04-15 21:50:38] 2025-04-16 01:50:11,611 | INFO     | 
[2025-04-15 21:50:38] 2025-04-16 01:50:11,612 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-04-15 21:50:38] 2025-04-16 01:50:11,770 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,771 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,773 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,773 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-15 21:50:38] 2025-04-16 01:50:11,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-15 21:50:38] 2025-04-16 01:50:11,779 | INFO     | job 6603684589 has completed (purged errors)
[2025-04-15 21:50:38] 2025-04-16 01:50:11,780 | INFO     | overall cleanup function is called
[2025-04-15 21:50:38] 2025-04-16 01:50:12,801 | INFO     | --- collectZombieJob: --- 10, [3844231]
[2025-04-15 21:50:38] 2025-04-16 01:50:12,801 | INFO     | zombie collector waiting for pid 3844231
[2025-04-15 21:50:38] 2025-04-16 01:50:12,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-15 21:50:38] 2025-04-16 01:50:12,802 | INFO     | collected zombie processes
[2025-04-15 21:50:38] 2025-04-16 01:50:12,802 | INFO     | will attempt to kill all subprocesses of pid=3844231
[2025-04-15 21:50:38] 2025-04-16 01:50:20,595 | INFO     | process IDs to be killed: [3844231] (in reverse order)
[2025-04-15 21:50:38] 2025-04-16 01:50:21,413 | WARNING  | found no corresponding commands to process id(s)
[2025-04-15 21:50:38] 2025-04-16 01:50:21,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-15 21:50:38] 2025-04-16 01:50:21,567 | INFO     | did not find any defunct processes belonging to 3844231
[2025-04-15 21:50:38] 2025-04-16 01:50:22,026 | INFO     | did not find any defunct processes belonging to 3844231
[2025-04-15 21:50:38] 2025-04-16 01:50:22,026 | INFO     | ready for new job
[2025-04-15 21:50:38] 2025-04-16 01:50:22,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-15 21:50:38] 2025-04-16 01:50:22,124 | INFO     | **************************************
[2025-04-15 21:50:38] 2025-04-16 01:50:22,124 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-15 21:50:38] 2025-04-16 01:50:22,124 | INFO     | **************************************
[2025-04-15 21:50:38] 2025-04-16 01:50:22,125 | INFO     | 
[2025-04-15 21:50:38] 2025-04-16 01:50:22,433 | INFO     | architecture information:
[2025-04-15 21:50:38] 2025-04-16 01:50:22,539 | INFO     | executing command: cat /etc/os-release
[2025-04-15 21:50:38] 2025-04-16 01:50:22,846 | INFO     | cat /etc/os-release:
[2025-04-15 21:50:38] NAME="CentOS Linux"
[2025-04-15 21:50:38] VERSION="7 (Core)"
[2025-04-15 21:50:38] ID="centos"
[2025-04-15 21:50:38] ID_LIKE="rhel fedora"
[2025-04-15 21:50:38] VERSION_ID="7"
[2025-04-15 21:50:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-15 21:50:38] ANSI_COLOR="0;31"
[2025-04-15 21:50:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-15 21:50:38] HOME_URL="https://www.centos.org/"
[2025-04-15 21:50:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-15 21:50:38] 
[2025-04-15 21:50:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-15 21:50:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-15 21:50:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-15 21:50:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-15 21:50:38] 
[2025-04-15 21:50:38] 2025-04-16 01:50:22,847 | INFO     | **************************************
[2025-04-15 21:50:38] 2025-04-16 01:50:23,401 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-04-15 21:50:38] 2025-04-16 01:50:23,591 | INFO     | sufficient remaining disk space (93653565440 B)
[2025-04-15 21:50:38] 2025-04-16 01:50:23,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-15 21:50:38] 2025-04-16 01:50:23,592 | INFO     | current server update state: UPDATING_FINAL
[2025-04-15 21:50:38] 2025-04-16 01:50:23,593 | INFO     | update_server=False
[2025-04-15 21:50:38] 2025-04-16 01:50:23,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-15 21:50:38] 2025-04-16 01:50:23,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-15 21:50:38] 2025-04-16 01:50:23,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-15 21:50:38] 2025-04-16 01:50:23,628 | INFO     | aborting loop
[2025-04-15 21:50:38] 2025-04-16 01:50:24,075 | INFO     | all payload control threads have been joined
[2025-04-15 21:50:38] 2025-04-16 01:50:24,200 | INFO     | all data control threads have been joined
[2025-04-15 21:50:38] 2025-04-16 01:50:24,684 | INFO     | [job] retrieve thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,692 | INFO     | [job] job monitor thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,789 | INFO     | [payload] execute_payloads thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,797 | INFO     | [job] create_data_payload thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,804 | INFO     | [job] validate thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,810 | INFO     | [data] copytool_in thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,824 | INFO     | [payload] validate_pre thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:24,856 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-15 21:50:38] 2025-04-16 01:50:24,869 | INFO     | all job control threads have been joined
[2025-04-15 21:50:38] 2025-04-16 01:50:25,102 | INFO     | [payload] control thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:25,271 | INFO     | [data] control thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:25,659 | INFO     | [data] copytool_out thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:25,746 | INFO     | [payload] validate_post thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:25,823 | INFO     | [payload] failed_post thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:25,862 | INFO     | [job] queue monitor thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:25,875 | INFO     | [job] control thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:27,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-15 21:50:38] 2025-04-16 01:50:30,837 | INFO     | PID=3827707 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-15 21:50:38] 2025-04-16 01:50:30,838 | INFO     | .. there are 25 such processes running
[2025-04-15 21:50:38] 2025-04-16 01:50:30,865 | INFO     | found 0 job(s) in 20 queues
[2025-04-15 21:50:38] 2025-04-16 01:50:30,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-15 21:50:38] 2025-04-16 01:50:30,866 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-15 21:50:38] 2025-04-16 01:50:31,122 | INFO     | [data] queue_monitor thread has finished
[2025-04-15 21:50:38] 2025-04-16 01:50:31,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195177424704)>', '<ExcThread(monitor, started 140194661504768)>']
[2025-04-15 21:50:38] 2025-04-16 01:50:31,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-15 21:50:38] 2025-04-16 01:50:31,872 | INFO     | [monitor] control thread has ended
[2025-04-15 21:50:38] 2025-04-16 01:50:36,388 | INFO     | all workflow threads have been joined
[2025-04-15 21:50:38] 2025-04-16 01:50:36,388 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-15 21:50:38] 2025-04-16 01:50:36,389 | INFO     | traces error code: 0
[2025-04-15 21:50:38] 2025-04-16 01:50:36,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-15 21:50:38] 2025-04-16 01:50:37,326 [wrapper] ==== pilot stdout END ====
[2025-04-15 21:50:38] 2025-04-16 01:50:37,346 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-15 21:50:38] 2025-04-16 01:50:37,354 [wrapper] pilotpid: 3827707
[2025-04-15 21:50:38] 2025-04-16 01:50:37,359 [wrapper] Pilot exit status: 0
[2025-04-15 21:50:38] 2025-04-16 01:50:37,450 [wrapper] pandaids: 6603684589
[2025-04-15 21:50:38] 2025-04-16 01:50:37,867 [wrapper] cleanup supervisor_pilot 1764010 3827708
[2025-04-15 21:50:38] 2025-04-16 01:50:37,880 [wrapper] Test setup, not cleaning
[2025-04-15 21:50:38] 2025-04-16 01:50:37,887 [wrapper] apfmon messages muted
[2025-04-15 21:50:38] 2025-04-16 01:50:37,892 [wrapper] ==== wrapper stdout END ====
[2025-04-15 21:50:38] 2025-04-16 01:50:37,900 [wrapper] ==== wrapper stderr END ====
[2025-04-15 21:50:38]  *** Error codes and diagnostics ***
[2025-04-15 21:50:38]     "exeErrorCode": 0,
[2025-04-15 21:50:38]     "exeErrorDiag": "",
[2025-04-15 21:50:38]     "pilotErrorCode": 0,
[2025-04-15 21:50:38]     "pilotErrorDiag": "",
[2025-04-15 21:50:38]  *** Listing of results directory ***
[2025-04-15 21:50:38] total 417120
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas    495897 Apr 15 06:24 pilot3.tar.gz
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas      5111 Apr 15 06:59 queuedata.json
[2025-04-15 21:50:38] -rwx------. 1 boincer umatlas     37140 Apr 15 07:00 runpilot2-wrapper.sh
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas       100 Apr 15 11:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-15 21:50:38] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 15 11:24 run_atlas
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas       105 Apr 15 11:24 job.xml
[2025-04-15 21:50:38] -rw-r--r--. 2 boincer umatlas 224058061 Apr 15 11:24 EVNT.44075481._001060.pool.root.1
[2025-04-15 21:50:38] drwxrwx--x. 2 boincer umatlas      4096 Apr 15 11:24 shared
[2025-04-15 21:50:38] -rw-r--r--. 2 boincer umatlas    508898 Apr 15 11:24 input.tar.gz
[2025-04-15 21:50:38] -rw-r--r--. 2 boincer umatlas     17569 Apr 15 11:24 start_atlas.sh
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas         0 Apr 15 11:24 boinc_lockfile
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas      2579 Apr 15 11:24 pandaJob.out
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas       467 Apr 15 11:24 setup.sh.local
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas    984001 Apr 15 11:26 agis_schedconf.cvmfs.json
[2025-04-15 21:50:38] drwx------. 4 boincer umatlas      4096 Apr 15 11:26 pilot3
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas 193922927 Apr 15 21:40 HITS.44075483._027154.pool.root.1
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas       532 Apr 15 21:40 boinc_task_state.xml
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas      6858 Apr 15 21:48 init_data.xml
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas      1053 Apr 15 21:48 memory_monitor_summary.json
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas   1603529 Apr 15 21:49 agis_ddmendpoints.agis.ALL.json
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas    543060 Apr 15 21:49 log.44075483._027154.job.log.tgz.1
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas      7758 Apr 15 21:50 heartbeat.json
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas        95 Apr 15 21:50 pilot_heartbeat.json
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas      4748 Apr 15 21:50 pilotlog.txt
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas   2110322 Apr 15 21:50 log.44075483._027154.job.log.1
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas       357 Apr 15 21:50 output.list
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas       620 Apr 15 21:50 runtime_log
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas   2672640 Apr 15 21:50 result.tar.gz
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas       666 Apr 15 21:50 zUWMDm6CtO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmt1XLDmyfpiEn.diag
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas     11429 Apr 15 21:50 runtime_log.err
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas        29 Apr 15 21:50 wrapper_checkpoint.txt
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas     21619 Apr 15 21:50 stderr.txt
[2025-04-15 21:50:38] -rw-r--r--. 1 boincer umatlas      8192 Apr 15 21:50 boinc_mmap_file
[2025-04-15 21:50:38] HITS file was successfully produced:
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas 193922927 Apr 15 21:40 shared/HITS.pool.root.1
[2025-04-15 21:50:38]  *** Contents of shared directory: ***
[2025-04-15 21:50:38] total 411324
[2025-04-15 21:50:38] -rw-r--r--. 2 boincer umatlas 224058061 Apr 15 11:24 ATLAS.root_0
[2025-04-15 21:50:38] -rw-r--r--. 2 boincer umatlas    508898 Apr 15 11:24 input.tar.gz
[2025-04-15 21:50:38] -rw-r--r--. 2 boincer umatlas     17569 Apr 15 11:24 start_atlas.sh
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas 193922927 Apr 15 21:40 HITS.pool.root.1
[2025-04-15 21:50:38] -rw-------. 1 boincer umatlas   2672640 Apr 15 21:50 result.tar.gz
21:50:40 (3821382): run_atlas exited; CPU time 114810.609711
21:50:40 (3821382): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN