Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:43:30 (29283): wrapper (7.7.26015): starting
09:43:30 (29283): wrapper: running run_atlas (--nthreads 12)
[2025-04-15 09:43:30] Arguments: --nthreads 12
[2025-04-15 09:43:30] Threads: 12
[2025-04-15 09:43:30] Checking for CVMFS
[2025-04-15 09:43:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 09:43:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 09:43:31] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 09:43:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 09:43:31] 2.11.2.0 13814 393694 163076 144889 0 56 15103261 20275201 1 130560 0 19001693 99.990 5727483 53427 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-15 09:43:31] CVMFS is ok
[2025-04-15 09:43:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 09:43:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 09:43:31] Further information can be found at the LHC@home message board.
[2025-04-15 09:43:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 09:43:31] Checking for apptainer binary...
[2025-04-15 09:43:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 09:43:31] Running /usr/bin/apptainer --version
[2025-04-15 09:43:31] apptainer version 1.3.2-1.el7
[2025-04-15 09:43:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 09:43:32] c-205-7.aglt2.org
[2025-04-15 09:43:32] apptainer works
[2025-04-15 09:43:32] Set ATHENA_PROC_NUMBER=12
[2025-04-15 09:43:32] Set ATHENA_CORE_NUMBER=12
[2025-04-15 09:43:32] Starting ATLAS job with PandaID=6603683776
[2025-04-15 09:43:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-15 11:09:15]  *** The last 200 lines of the pilot log: ***
[2025-04-15 11:09:15]  guid=aee22620-ff41-45c8-a88d-09cc1ff0491b
[2025-04-15 11:09:15]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-15 11:09:15]  is_altstaged=None
[2025-04-15 11:09:15]  is_tar=False
[2025-04-15 11:09:15]  lfn=log.44075483._026484.job.log.tgz.1
[2025-04-15 11:09:15]  mtime=0
[2025-04-15 11:09:15]  protocol_id=None
[2025-04-15 11:09:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-15 11:09:15]  replicas=None
[2025-04-15 11:09:15]  scope=mc23_13p6TeV
[2025-04-15 11:09:15]  status=None
[2025-04-15 11:09:15]  status_code=0
[2025-04-15 11:09:15]  storage_token=
[2025-04-15 11:09:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6603683776/log.44075483._026484.job.log.tgz.1
[2025-04-15 11:09:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/59/log.44075483._026484.job.log.tgz.1
[2025-04-15 11:09:15]  workdir=None
[2025-04-15 11:09:15] ]
[2025-04-15 11:09:15] 2025-04-15 15:08:57,437 | INFO     | transferring file log.44075483._026484.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6603683776/log.44075483._026484.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-15 11:09:15] 2025-04-15 15:08:57,437 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6603683776/log.44075483._026484.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._026484.job
[2025-04-15 11:09:15] 2025-04-15 15:08:57,460 | INFO     | adding to output.list: log.44075483._026484.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/59/log.44075483._026484.job.log.tg
[2025-04-15 11:09:15] 2025-04-15 15:08:57,461 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-15 11:09:15] 2025-04-15 15:08:57,461 | INFO     | summary of transferred files:
[2025-04-15 11:09:15] 2025-04-15 15:08:57,461 | INFO     |  -- lfn=log.44075483._026484.job.log.tgz.1, status_code=0, status=transferred
[2025-04-15 11:09:15] 2025-04-15 15:08:57,461 | INFO     | stage-out finished correctly
[2025-04-15 11:09:15] 2025-04-15 15:08:57,546 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-15 11:09:15] 2025-04-15 15:08:57,627 | INFO     | job 6603683776 has state=finished
[2025-04-15 11:09:15] 2025-04-15 15:08:57,627 | INFO     | preparing for final server update for job 6603683776 in state='finished'
[2025-04-15 11:09:15] 2025-04-15 15:08:57,628 | INFO     | this job has now completed (state=finished)
[2025-04-15 11:09:15] 2025-04-15 15:08:57,628 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-15 11:09:15] 2025-04-15 15:08:57,628 | INFO     | log transfer has been attempted: DONE
[2025-04-15 11:09:15] 2025-04-15 15:08:57,628 | INFO     | job 6603683776 has finished - writing final server update
[2025-04-15 11:09:15] 2025-04-15 15:08:57,629 | INFO     | total number of processed events: 400 (read)
[2025-04-15 11:09:15] 2025-04-15 15:08:57,630 | INFO     | executing command: lscpu
[2025-04-15 11:09:15] 2025-04-15 15:08:57,669 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-15 11:09:15] 2025-04-15 15:08:59,753 | WARNING  | process 7858 can no longer be monitored (due to stat problems) - aborting
[2025-04-15 11:09:15] 2025-04-15 15:08:59,753 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6603683776/memory_monitor_summary.json (trf name=prmon)
[2025-04-15 11:09:15] 2025-04-15 15:08:59,842 | INFO     | number of running child processes to parent process 7858: 1
[2025-04-15 11:09:15] 2025-04-15 15:08:59,843 | INFO     | maximum number of monitored processes: 6
[2025-04-15 11:09:15] 2025-04-15 15:09:02,342 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-15 11:09:15] 2025-04-15 15:09:02,342 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6603683776/memory_monitor_summary.json (trf name=prmon)
[2025-04-15 11:09:15] 2025-04-15 15:09:02,343 | INFO     | extracted standard info from prmon json
[2025-04-15 11:09:15] 2025-04-15 15:09:02,343 | INFO     | extracted standard memory fields from prmon json
[2025-04-15 11:09:15] 2025-04-15 15:09:02,343 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-15 11:09:15] 2025-04-15 15:09:02,344 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-15 11:09:15] 2025-04-15 15:09:02,344 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-15 11:09:15] 2025-04-15 15:09:02,347 | INFO     | fitting pss+swap vs Time
[2025-04-15 11:09:15] 2025-04-15 15:09:02,347 | INFO     | monitor loop #381: job 0:6603683776 is in state 'finished'
[2025-04-15 11:09:15] 2025-04-15 15:09:02,347 | INFO     | sum of square deviations: 141539398.0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 11:09:15] 2025-04-15 15:09:02,348 | INFO     | sum of deviations: 18820177988.0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,348 | INFO     | mean x: 1744727278.0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,348 | INFO     | mean y: 2621789.6233766233
[2025-04-15 11:09:15] 2025-04-15 15:09:02,348 | INFO     | -- intersect: -231989872006.90073
[2025-04-15 11:09:15] 2025-04-15 15:09:02,349 | INFO     | intersect: -231989872006.90073
[2025-04-15 11:09:15] 2025-04-15 15:09:02,349 | INFO     | chi2: 2.3600993102567247
[2025-04-15 11:09:15] 2025-04-15 15:09:02,349 | INFO     | -- intersect: -231989872006.90073
[2025-04-15 11:09:15] 2025-04-15 15:09:02,349 | INFO     | current memory leak: 132.97 B/s (using 77 data points, chi2=2.36)
[2025-04-15 11:09:15] 2025-04-15 15:09:02,349 | INFO     | ..............................
[2025-04-15 11:09:15] 2025-04-15 15:09:02,349 | INFO     | . Timing measurements:
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | . get job = 0 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | . initial setup = 2 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | . payload setup = 7 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | . stage-in = 0 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | . payload execution = 5082 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | . stage-out = 0 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | . log creation = 0 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,350 | INFO     | ..............................
[2025-04-15 11:09:15] 2025-04-15 15:09:02,490 | INFO     | 
[2025-04-15 11:09:15] 2025-04-15 15:09:02,490 | INFO     | job summary report
[2025-04-15 11:09:15] 2025-04-15 15:09:02,490 | INFO     | --------------------------------------------------
[2025-04-15 11:09:15] 2025-04-15 15:09:02,490 | INFO     | PanDA job id: 6603683776
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | task id: 44075483
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | errors: (none)
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | pilot state: finished 
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | transexitcode: 0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | exeerrorcode: 0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | exeerrordiag: 
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | exitcode: 0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,491 | INFO     | exitmsg: OK
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | cpuconsumptiontime: 47554 s
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | nevents: 400
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | neventsw: 0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | pid: 7858
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | pgrp: 7858
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | corecount: 12
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | event service: False
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | sizes: {0: 2417144, 1: 2417343, 6: 2417549, 11: 2417577, 5093: 2443781, 5094: 2443780, 5096: 2452961, 5101: 2453075}
[2025-04-15 11:09:15] 2025-04-15 15:09:02,492 | INFO     | --------------------------------------------------
[2025-04-15 11:09:15] 2025-04-15 15:09:02,493 | INFO     | 
[2025-04-15 11:09:15] 2025-04-15 15:09:02,493 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-15 11:09:15] 2025-04-15 15:09:02,516 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,516 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,516 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,516 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,517 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,518 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,518 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,518 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,518 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,518 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,519 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-15 11:09:15] 2025-04-15 15:09:02,519 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,519 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-15 11:09:15] 2025-04-15 15:09:02,519 | INFO     | job 6603683776 has completed (purged errors)
[2025-04-15 11:09:15] 2025-04-15 15:09:02,519 | INFO     | overall cleanup function is called
[2025-04-15 11:09:15] 2025-04-15 15:09:03,528 | INFO     | --- collectZombieJob: --- 10, [7858]
[2025-04-15 11:09:15] 2025-04-15 15:09:03,528 | INFO     | zombie collector waiting for pid 7858
[2025-04-15 11:09:15] 2025-04-15 15:09:03,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-15 11:09:15] 2025-04-15 15:09:03,528 | INFO     | collected zombie processes
[2025-04-15 11:09:15] 2025-04-15 15:09:03,528 | INFO     | will attempt to kill all subprocesses of pid=7858
[2025-04-15 11:09:15] 2025-04-15 15:09:03,623 | INFO     | process IDs to be killed: [7858] (in reverse order)
[2025-04-15 11:09:15] 2025-04-15 15:09:03,673 | WARNING  | found no corresponding commands to process id(s)
[2025-04-15 11:09:15] 2025-04-15 15:09:03,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-15 11:09:15] 2025-04-15 15:09:03,676 | INFO     | did not find any defunct processes belonging to 7858
[2025-04-15 11:09:15] 2025-04-15 15:09:03,679 | INFO     | did not find any defunct processes belonging to 7858
[2025-04-15 11:09:15] 2025-04-15 15:09:03,679 | INFO     | ready for new job
[2025-04-15 11:09:15] 2025-04-15 15:09:03,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-15 11:09:15] 2025-04-15 15:09:03,680 | INFO     | **************************************
[2025-04-15 11:09:15] 2025-04-15 15:09:03,680 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-15 11:09:15] 2025-04-15 15:09:03,680 | INFO     | **************************************
[2025-04-15 11:09:15] 2025-04-15 15:09:03,680 | INFO     | 
[2025-04-15 11:09:15] 2025-04-15 15:09:03,681 | INFO     | architecture information:
[2025-04-15 11:09:15] 2025-04-15 15:09:03,681 | INFO     | executing command: cat /etc/os-release
[2025-04-15 11:09:15] 2025-04-15 15:09:03,697 | INFO     | cat /etc/os-release:
[2025-04-15 11:09:15] NAME="CentOS Linux"
[2025-04-15 11:09:15] VERSION="7 (Core)"
[2025-04-15 11:09:15] ID="centos"
[2025-04-15 11:09:15] ID_LIKE="rhel fedora"
[2025-04-15 11:09:15] VERSION_ID="7"
[2025-04-15 11:09:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-15 11:09:15] ANSI_COLOR="0;31"
[2025-04-15 11:09:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-15 11:09:15] HOME_URL="https://www.centos.org/"
[2025-04-15 11:09:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-15 11:09:15] 
[2025-04-15 11:09:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-15 11:09:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-15 11:09:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-15 11:09:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-15 11:09:15] 
[2025-04-15 11:09:15] 2025-04-15 15:09:03,697 | INFO     | **************************************
[2025-04-15 11:09:15] 2025-04-15 15:09:04,200 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-15 11:09:15] 2025-04-15 15:09:04,220 | INFO     | sufficient remaining disk space (29386342400 B)
[2025-04-15 11:09:15] 2025-04-15 15:09:04,221 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-15 11:09:15] 2025-04-15 15:09:04,221 | INFO     | current server update state: UPDATING_FINAL
[2025-04-15 11:09:15] 2025-04-15 15:09:04,221 | INFO     | update_server=False
[2025-04-15 11:09:15] 2025-04-15 15:09:04,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-15 11:09:15] 2025-04-15 15:09:04,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-15 11:09:15] 2025-04-15 15:09:04,222 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-15 11:09:15] 2025-04-15 15:09:04,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-15 11:09:15] 2025-04-15 15:09:04,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-15 11:09:15] 2025-04-15 15:09:04,223 | INFO     | aborting loop
[2025-04-15 11:09:15] 2025-04-15 15:09:04,223 | INFO     | found 0 job(s) in 20 queues
[2025-04-15 11:09:15] 2025-04-15 15:09:04,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-15 11:09:15] 2025-04-15 15:09:04,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-15 11:09:15] 2025-04-15 15:09:04,872 | INFO     | all data control threads have been joined
[2025-04-15 11:09:15] 2025-04-15 15:09:05,227 | INFO     | [job] retrieve thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:05,229 | INFO     | [job] queue monitor thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:05,229 | INFO     | [job] job monitor thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:05,260 | INFO     | [payload] validate_pre thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:05,530 | INFO     | [payload] failed_post thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:05,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-15 11:09:15] 2025-04-15 15:09:05,663 | INFO     | all payload control threads have been joined
[2025-04-15 11:09:15] 2025-04-15 15:09:05,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:05,878 | INFO     | [data] control thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:05,912 | INFO     | all job control threads have been joined
[2025-04-15 11:09:15] 2025-04-15 15:09:05,972 | INFO     | [data] copytool_in thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:06,124 | INFO     | [payload] validate_post thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:06,516 | INFO     | [job] create_data_payload thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:06,516 | INFO     | [job] validate thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:06,588 | INFO     | [payload] execute_payloads thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:06,664 | INFO     | [payload] control thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:06,917 | INFO     | [job] control thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:07,563 | INFO     | [data] copytool_out thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:08,229 | INFO     | [data] queue_monitor thread has finished
[2025-04-15 11:09:15] 2025-04-15 15:09:10,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140713104074560)>', '<ExcThread(monitor, started 140711903090432)>']
[2025-04-15 11:09:15] 2025-04-15 15:09:10,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-15 11:09:15] 2025-04-15 15:09:10,255 | INFO     | [monitor] control thread has ended
[2025-04-15 11:09:15] 2025-04-15 15:09:15,071 | INFO     | all workflow threads have been joined
[2025-04-15 11:09:15] 2025-04-15 15:09:15,071 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-15 11:09:15] 2025-04-15 15:09:15,072 | INFO     | traces error code: 0
[2025-04-15 11:09:15] 2025-04-15 15:09:15,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-15 11:09:15] 2025-04-15 15:09:15,158 [wrapper] ==== pilot stdout END ====
[2025-04-15 11:09:15] 2025-04-15 15:09:15,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-15 11:09:15] 2025-04-15 15:09:15,165 [wrapper] pilotpid: 1318
[2025-04-15 11:09:15] 2025-04-15 15:09:15,169 [wrapper] Pilot exit status: 0
[2025-04-15 11:09:15] 2025-04-15 15:09:15,184 [wrapper] pandaids: 6603683776
[2025-04-15 11:09:15] 2025-04-15 15:09:15,221 [wrapper] cleanup supervisor_pilot 31418 1319
[2025-04-15 11:09:15] 2025-04-15 15:09:15,225 [wrapper] Test setup, not cleaning
[2025-04-15 11:09:15] 2025-04-15 15:09:15,229 [wrapper] apfmon messages muted
[2025-04-15 11:09:15] 2025-04-15 15:09:15,233 [wrapper] ==== wrapper stdout END ====
[2025-04-15 11:09:15] 2025-04-15 15:09:15,236 [wrapper] ==== wrapper stderr END ====
[2025-04-15 11:09:15]  *** Error codes and diagnostics ***
[2025-04-15 11:09:15]     "exeErrorCode": 0,
[2025-04-15 11:09:15]     "exeErrorDiag": "",
[2025-04-15 11:09:15]     "pilotErrorCode": 0,
[2025-04-15 11:09:15]     "pilotErrorDiag": "",
[2025-04-15 11:09:15]  *** Listing of results directory ***
[2025-04-15 11:09:15] total 418540
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas    495897 Apr 15 05:10 pilot3.tar.gz
[2025-04-15 11:09:15] -rwx------ 1 boincer umatlas     37140 Apr 15 05:29 runpilot2-wrapper.sh
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas      5111 Apr 15 05:29 queuedata.json
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas       100 Apr 15 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-15 11:09:15] -rwxr-xr-x 1 boincer umatlas      7986 Apr 15 09:43 run_atlas
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas       105 Apr 15 09:43 job.xml
[2025-04-15 11:09:15] -rw-r--r-- 2 boincer umatlas 226333236 Apr 15 09:43 EVNT.44075481._001033.pool.root.1
[2025-04-15 11:09:15] -rw-r--r-- 2 boincer umatlas     17569 Apr 15 09:43 start_atlas.sh
[2025-04-15 11:09:15] drwxrwx--x 2 boincer umatlas      4096 Apr 15 09:43 shared
[2025-04-15 11:09:15] -rw-r--r-- 2 boincer umatlas    508887 Apr 15 09:43 input.tar.gz
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas         0 Apr 15 09:43 boinc_lockfile
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas      2578 Apr 15 09:43 pandaJob.out
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas       424 Apr 15 09:43 setup.sh.local
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas    984001 Apr 15 09:43 agis_schedconf.cvmfs.json
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas   1603529 Apr 15 09:43 agis_ddmendpoints.agis.ALL.json
[2025-04-15 11:09:15] drwx------ 4 boincer umatlas      4096 Apr 15 09:43 pilot3
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas      5867 Apr 15 11:04 init_data.xml
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas 196683333 Apr 15 11:08 HITS.44075483._026484.pool.root.1
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas      8192 Apr 15 11:08 boinc_mmap_file
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas        27 Apr 15 11:08 wrapper_checkpoint.txt
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas       529 Apr 15 11:08 boinc_task_state.xml
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas        95 Apr 15 11:08 pilot_heartbeat.json
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas      1048 Apr 15 11:08 memory_monitor_summary.json
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas    382581 Apr 15 11:08 log.44075483._026484.job.log.tgz.1
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas      7751 Apr 15 11:09 heartbeat.json
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas      4476 Apr 15 11:09 pilotlog.txt
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas    482528 Apr 15 11:09 log.44075483._026484.job.log.1
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas       357 Apr 15 11:09 output.list
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas       620 Apr 15 11:09 runtime_log
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas    880640 Apr 15 11:09 result.tar.gz
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas     11010 Apr 15 11:09 runtime_log.err
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas       657 Apr 15 11:09 RucLDmGnrO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmfuXLDmpMIhJn.diag
[2025-04-15 11:09:15] -rw-r--r-- 1 boincer umatlas     21309 Apr 15 11:09 stderr.txt
[2025-04-15 11:09:15] HITS file was successfully produced:
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas 196683333 Apr 15 11:08 shared/HITS.pool.root.1
[2025-04-15 11:09:15]  *** Contents of shared directory: ***
[2025-04-15 11:09:15] total 414492
[2025-04-15 11:09:15] -rw-r--r-- 2 boincer umatlas 226333236 Apr 15 09:43 ATLAS.root_0
[2025-04-15 11:09:15] -rw-r--r-- 2 boincer umatlas     17569 Apr 15 09:43 start_atlas.sh
[2025-04-15 11:09:15] -rw-r--r-- 2 boincer umatlas    508887 Apr 15 09:43 input.tar.gz
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas 196683333 Apr 15 11:08 HITS.pool.root.1
[2025-04-15 11:09:15] -rw------- 1 boincer umatlas    880640 Apr 15 11:09 result.tar.gz
11:09:16 (29283): run_atlas exited; CPU time 47536.427331
11:09:16 (29283): called boinc_finish(0)

</stderr_txt>
]]>

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