Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:20:33 (511425): wrapper (7.7.26015): starting
11:20:33 (511425): wrapper: running run_atlas (--nthreads 10)
[2025-04-15 11:20:33] Arguments: --nthreads 10
[2025-04-15 11:20:33] Threads: 10
[2025-04-15 11:20:33] Checking for CVMFS
[2025-04-15 11:20:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 11:20:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 11:20:35] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 11:20:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 11:20:36] 2.12.6.0 1132017 48674 228076 144894 0 115 20752319 32935936 18251 130560 0 92317630 99.638 95803131 26545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-15 11:20:36] CVMFS is ok
[2025-04-15 11:20:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 11:20:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 11:20:36] Further information can be found at the LHC@home message board.
[2025-04-15 11:20:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 11:20:36] Checking for apptainer binary...
[2025-04-15 11:20:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 11:20:36] Running /usr/bin/apptainer --version
[2025-04-15 11:20:37] apptainer version 1.4.0-1.el9
[2025-04-15 11:20:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 11:20:38] c-5-5.aglt2.org
[2025-04-15 11:20:38] apptainer works
[2025-04-15 11:20:38] Set ATHENA_PROC_NUMBER=10
[2025-04-15 11:20:38] Set ATHENA_CORE_NUMBER=10
[2025-04-15 11:20:38] Starting ATLAS job with PandaID=6603682794
[2025-04-15 11:20:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 04:59:12]  *** The last 200 lines of the pilot log: ***
[2025-04-16 04:59:12] 2025-04-16 08:58:40,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 04:59:12] 2025-04-16 08:58:42,790 | INFO     | monitor loop #3283: job 0:6603682794 is in state 'finished'
[2025-04-16 04:59:12] 2025-04-16 08:58:42,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 04:59:12] 2025-04-16 08:58:45,388 | INFO     | monitor loop #3284: job 0:6603682794 is in state 'finished'
[2025-04-16 04:59:12] 2025-04-16 08:58:45,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 04:59:12] 2025-04-16 08:58:47,915 | INFO     | monitor loop #3285: job 0:6603682794 is in state 'finished'
[2025-04-16 04:59:12] 2025-04-16 08:58:47,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 04:59:12] 2025-04-16 08:58:50,419 | INFO     | monitor loop #3286: job 0:6603682794 is in state 'finished'
[2025-04-16 04:59:12] 2025-04-16 08:58:50,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 04:59:12] 2025-04-16 08:58:52,937 | INFO     | monitor loop #3287: job 0:6603682794 is in state 'finished'
[2025-04-16 04:59:12] 2025-04-16 08:58:52,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 04:59:12] 2025-04-16 08:58:53,316 | INFO     | PID=516126 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-16 04:59:12] 2025-04-16 08:58:53,316 | INFO     | .. there are 36 such processes running
[2025-04-16 04:59:12] 2025-04-16 08:58:55,508 | INFO     | monitor loop #3288: job 0:6603682794 is in state 'finished'
[2025-04-16 04:59:12] 2025-04-16 08:58:55,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,335 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-16 04:59:12] 2025-04-16 08:58:56,336 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6603682794/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,343 | INFO     | extracted standard info from prmon json
[2025-04-16 04:59:12] 2025-04-16 08:58:56,344 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 04:59:12] 2025-04-16 08:58:56,344 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 04:59:12] 2025-04-16 08:58:56,348 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 04:59:12] 2025-04-16 08:58:56,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 04:59:12] 2025-04-16 08:58:56,388 | INFO     | fitting pss+swap vs Time
[2025-04-16 04:59:12] 2025-04-16 08:58:56,391 | INFO     | sum of square deviations: 345795827169.5095
[2025-04-16 04:59:12] 2025-04-16 08:58:56,419 | INFO     | sum of deviations: 2274940190969.6943
[2025-04-16 04:59:12] 2025-04-16 08:58:56,420 | INFO     | mean x: 1744762278.5969143
[2025-04-16 04:59:12] 2025-04-16 08:58:56,420 | INFO     | mean y: 2141973.3413693346
[2025-04-16 04:59:12] 2025-04-16 08:58:56,420 | INFO     | -- intersect: -11476393970.131025
[2025-04-16 04:59:12] 2025-04-16 08:58:56,420 | INFO     | intersect: -11476393970.131025
[2025-04-16 04:59:12] 2025-04-16 08:58:56,422 | INFO     | chi2: 15.006121401988535
[2025-04-16 04:59:12] 2025-04-16 08:58:56,423 | INFO     | sum of square deviations: 340818285422.7204
[2025-04-16 04:59:12] 2025-04-16 08:58:56,452 | INFO     | sum of deviations: 2378578734920.364
[2025-04-16 04:59:12] 2025-04-16 08:58:56,453 | INFO     | mean x: 1744762126.0998063
[2025-04-16 04:59:12] 2025-04-16 08:58:56,453 | INFO     | mean y: 2145138.3168604653
[2025-04-16 04:59:12] 2025-04-16 08:58:56,453 | INFO     | -- intersect: -12174590289.737087
[2025-04-16 04:59:12] 2025-04-16 08:58:56,453 | INFO     | intersect: -12174590289.737087
[2025-04-16 04:59:12] 2025-04-16 08:58:56,455 | INFO     | chi2: 13.649016015571476
[2025-04-16 04:59:12] 2025-04-16 08:58:56,455 | INFO     | current chi2=13.649016015571476 (change=9.043678576645544 %)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,455 | INFO     | right removable region: 1031
[2025-04-16 04:59:12] 2025-04-16 08:58:56,457 | INFO     | sum of square deviations: 340817907832.7202
[2025-04-16 04:59:12] 2025-04-16 08:58:56,485 | INFO     | sum of deviations: 2013144808209.4292
[2025-04-16 04:59:12] 2025-04-16 08:58:56,485 | INFO     | mean x: 1744762431.0998063
[2025-04-16 04:59:12] 2025-04-16 08:58:56,486 | INFO     | mean y: 2149990.6269379845
[2025-04-16 04:59:12] 2025-04-16 08:58:56,486 | INFO     | -- intersect: -10303820878.284733
[2025-04-16 04:59:12] 2025-04-16 08:58:56,486 | INFO     | intersect: -10303820878.284733
[2025-04-16 04:59:12] 2025-04-16 08:58:56,487 | INFO     | chi2: 11.879156883384942
[2025-04-16 04:59:12] 2025-04-16 08:58:56,487 | INFO     | current chi2=11.879156883384942 (change=20.837926302456967 %)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,488 | INFO     | left removable region: 10
[2025-04-16 04:59:12] 2025-04-16 08:58:56,489 | INFO     | sum of square deviations: 330035699536.5548
[2025-04-16 04:59:12] 2025-04-16 08:58:56,516 | INFO     | sum of deviations: 1923012815443.786
[2025-04-16 04:59:12] 2025-04-16 08:58:56,517 | INFO     | mean x: 1744762400.6023507
[2025-04-16 04:59:12] 2025-04-16 08:58:56,517 | INFO     | mean y: 2159230.8393731634
[2025-04-16 04:59:12] 2025-04-16 08:58:56,517 | INFO     | -- intersect: -10164015098.102161
[2025-04-16 04:59:12] 2025-04-16 08:58:56,517 | INFO     | intersect: -10164015098.102161
[2025-04-16 04:59:12] 2025-04-16 08:58:56,519 | INFO     | chi2: 8.940278900360369
[2025-04-16 04:59:12] 2025-04-16 08:58:56,519 | INFO     | -- intersect: -10164015098.102161
[2025-04-16 04:59:12] 2025-04-16 08:58:56,519 | INFO     | current memory leak: 5.83 B/s (using 1021 data points, chi2=8.94)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | ..............................
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | . Timing measurements:
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | . get job = 2 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | . initial setup = 11 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | . payload setup = 39 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | . stage-in = 0 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | . payload execution = 63225 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,521 | INFO     | . stage-out = 9 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,522 | INFO     | . log creation = 0 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,522 | INFO     | ..............................
[2025-04-16 04:59:12] 2025-04-16 08:58:56,756 | INFO     | 
[2025-04-16 04:59:12] 2025-04-16 08:58:56,757 | INFO     | job summary report
[2025-04-16 04:59:12] 2025-04-16 08:58:56,757 | INFO     | --------------------------------------------------
[2025-04-16 04:59:12] 2025-04-16 08:58:56,757 | INFO     | PanDA job id: 6603682794
[2025-04-16 04:59:12] 2025-04-16 08:58:56,757 | INFO     | task id: 44075483
[2025-04-16 04:59:12] 2025-04-16 08:58:56,757 | INFO     | errors: (none)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,757 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 04:59:12] 2025-04-16 08:58:56,757 | INFO     | pilot state: finished 
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | transexitcode: 0
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | exeerrorcode: 0
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | exeerrordiag: 
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | exitcode: 0
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | exitmsg: OK
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | cpuconsumptiontime: 50646 s
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | nevents: 400
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | neventsw: 0
[2025-04-16 04:59:12] 2025-04-16 08:58:56,758 | INFO     | pid: 536891
[2025-04-16 04:59:12] 2025-04-16 08:58:56,759 | INFO     | pgrp: 536891
[2025-04-16 04:59:12] 2025-04-16 08:58:56,759 | INFO     | corecount: 10
[2025-04-16 04:59:12] 2025-04-16 08:58:56,764 | INFO     | event service: False
[2025-04-16 04:59:12] 2025-04-16 08:58:56,764 | INFO     | sizes: {0: 2417195, 1: 2417223, 2: 2417394, 3: 2417450, 15: 2417450, 27: 2417478, 38: 2417634, 51: 2417662, 54: 2417896, 64: 2417924, 63269: 2469071, 63279: 247801
[2025-04-16 04:59:12] 2025-04-16 08:58:56,764 | INFO     | --------------------------------------------------
[2025-04-16 04:59:12] 2025-04-16 08:58:56,764 | INFO     | 
[2025-04-16 04:59:12] 2025-04-16 08:58:56,765 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-16 04:59:12] 2025-04-16 08:58:56,836 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 04:59:12] 2025-04-16 08:58:56,839 | INFO     | job 6603682794 has completed (purged errors)
[2025-04-16 04:59:12] 2025-04-16 08:58:56,839 | INFO     | overall cleanup function is called
[2025-04-16 04:59:12] 2025-04-16 08:58:57,864 | INFO     | --- collectZombieJob: --- 10, [536891]
[2025-04-16 04:59:12] 2025-04-16 08:58:57,864 | INFO     | zombie collector waiting for pid 536891
[2025-04-16 04:59:12] 2025-04-16 08:58:57,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 04:59:12] 2025-04-16 08:58:57,864 | INFO     | collected zombie processes
[2025-04-16 04:59:12] 2025-04-16 08:58:57,865 | INFO     | will attempt to kill all subprocesses of pid=536891
[2025-04-16 04:59:12] 2025-04-16 08:58:58,675 | INFO     | process IDs to be killed: [536891] (in reverse order)
[2025-04-16 04:59:12] 2025-04-16 08:58:58,970 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 04:59:12] 2025-04-16 08:58:58,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 04:59:12] 2025-04-16 08:58:58,988 | INFO     | did not find any defunct processes belonging to 536891
[2025-04-16 04:59:12] 2025-04-16 08:58:59,006 | INFO     | did not find any defunct processes belonging to 536891
[2025-04-16 04:59:12] 2025-04-16 08:58:59,006 | INFO     | ready for new job
[2025-04-16 04:59:12] 2025-04-16 08:58:59,006 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 04:59:12] 2025-04-16 08:58:59,009 | INFO     | **************************************
[2025-04-16 04:59:12] 2025-04-16 08:58:59,009 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 04:59:12] 2025-04-16 08:58:59,010 | INFO     | **************************************
[2025-04-16 04:59:12] 2025-04-16 08:58:59,010 | INFO     | 
[2025-04-16 04:59:12] 2025-04-16 08:58:59,024 | INFO     | architecture information:
[2025-04-16 04:59:12] 2025-04-16 08:58:59,034 | INFO     | executing command: cat /etc/os-release
[2025-04-16 04:59:12] 2025-04-16 08:58:59,163 | INFO     | cat /etc/os-release:
[2025-04-16 04:59:12] NAME="CentOS Linux"
[2025-04-16 04:59:12] VERSION="7 (Core)"
[2025-04-16 04:59:12] ID="centos"
[2025-04-16 04:59:12] ID_LIKE="rhel fedora"
[2025-04-16 04:59:12] VERSION_ID="7"
[2025-04-16 04:59:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 04:59:12] ANSI_COLOR="0;31"
[2025-04-16 04:59:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 04:59:12] HOME_URL="https://www.centos.org/"
[2025-04-16 04:59:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 04:59:12] 
[2025-04-16 04:59:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 04:59:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 04:59:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 04:59:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 04:59:12] 
[2025-04-16 04:59:12] 2025-04-16 08:58:59,163 | INFO     | **************************************
[2025-04-16 04:59:12] 2025-04-16 08:58:59,674 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-16 04:59:12] 2025-04-16 08:58:59,816 | INFO     | sufficient remaining disk space (75926339584 B)
[2025-04-16 04:59:12] 2025-04-16 08:58:59,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 04:59:12] 2025-04-16 08:58:59,817 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 04:59:12] 2025-04-16 08:58:59,817 | INFO     | update_server=False
[2025-04-16 04:59:12] 2025-04-16 08:58:59,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 04:59:12] 2025-04-16 08:58:59,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 04:59:12] 2025-04-16 08:58:59,818 | INFO     | aborting loop
[2025-04-16 04:59:12] 2025-04-16 08:58:59,818 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 04:59:12] 2025-04-16 08:58:59,818 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 04:59:12] 2025-04-16 08:58:59,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 04:59:12] 2025-04-16 08:58:59,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 04:59:12] 2025-04-16 08:58:59,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 04:59:12] 2025-04-16 08:59:00,261 | INFO     | all job control threads have been joined
[2025-04-16 04:59:12] 2025-04-16 08:59:00,835 | INFO     | [job] retrieve thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:00,836 | INFO     | [job] job monitor thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:00,962 | INFO     | all data control threads have been joined
[2025-04-16 04:59:12] 2025-04-16 08:59:00,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 04:59:12] 2025-04-16 08:59:01,096 | INFO     | all payload control threads have been joined
[2025-04-16 04:59:12] 2025-04-16 08:59:01,154 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,164 | INFO     | [job] validate thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,267 | INFO     | [job] control thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,470 | INFO     | [payload] failed_post thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,583 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,775 | INFO     | [data] copytool_in thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 04:59:12] 2025-04-16 08:59:01,852 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:01,968 | INFO     | [data] control thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:02,011 | INFO     | [data] copytool_out thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:02,107 | INFO     | [payload] control thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:02,131 | INFO     | [payload] validate_post thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:02,796 | INFO     | [job] queue monitor thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:05,063 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 04:59:12] 2025-04-16 08:59:05,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140019198986048)>', '<ExcThread(monitor, started 140018416875264)>']
[2025-04-16 04:59:12] 2025-04-16 08:59:06,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 04:59:12] 2025-04-16 08:59:06,895 | INFO     | [monitor] control thread has ended
[2025-04-16 04:59:12] 2025-04-16 08:59:10,931 | INFO     | all workflow threads have been joined
[2025-04-16 04:59:12] 2025-04-16 08:59:10,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 04:59:12] 2025-04-16 08:59:10,942 | INFO     | traces error code: 0
[2025-04-16 04:59:12] 2025-04-16 08:59:10,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 04:59:12] 2025-04-16 08:59:12,602 [wrapper] ==== pilot stdout END ====
[2025-04-16 04:59:12] 2025-04-16 08:59:12,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 04:59:12] 2025-04-16 08:59:12,612 [wrapper] pilotpid: 516126
[2025-04-16 04:59:12] 2025-04-16 08:59:12,615 [wrapper] Pilot exit status: 0
[2025-04-16 04:59:12] 2025-04-16 08:59:12,651 [wrapper] pandaids: 6603682794
[2025-04-16 04:59:12] 2025-04-16 08:59:12,738 [wrapper] cleanup supervisor_pilot 3061704 516127
[2025-04-16 04:59:12] 2025-04-16 08:59:12,742 [wrapper] Test setup, not cleaning
[2025-04-16 04:59:12] 2025-04-16 08:59:12,745 [wrapper] apfmon messages muted
[2025-04-16 04:59:12] 2025-04-16 08:59:12,749 [wrapper] ==== wrapper stdout END ====
[2025-04-16 04:59:12] 2025-04-16 08:59:12,752 [wrapper] ==== wrapper stderr END ====
[2025-04-16 04:59:12]  *** Error codes and diagnostics ***
[2025-04-16 04:59:13]     "exeErrorCode": 0,
[2025-04-16 04:59:13]     "exeErrorDiag": "",
[2025-04-16 04:59:13]     "pilotErrorCode": 0,
[2025-04-16 04:59:13]     "pilotErrorDiag": "",
[2025-04-16 04:59:13]  *** Listing of results directory ***
[2025-04-16 04:59:13] total 419904
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas    495897 Apr 15 04:24 pilot3.tar.gz
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas      5111 Apr 15 04:40 queuedata.json
[2025-04-16 04:59:13] -rwx------. 1 boincer umatlas     37140 Apr 15 04:40 runpilot2-wrapper.sh
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas       100 Apr 15 11:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 04:59:13] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 15 11:20 run_atlas
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas       105 Apr 15 11:20 job.xml
[2025-04-16 04:59:13] -rw-r--r--. 2 boincer umatlas 224256647 Apr 15 11:20 EVNT.44075481._001020.pool.root.1
[2025-04-16 04:59:13] -rw-r--r--. 2 boincer umatlas     17569 Apr 15 11:20 start_atlas.sh
[2025-04-16 04:59:13] drwxrwx--x. 2 boincer umatlas      4096 Apr 15 11:20 shared
[2025-04-16 04:59:13] -rw-r--r--. 2 boincer umatlas    508897 Apr 15 11:20 input.tar.gz
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas         0 Apr 15 11:20 boinc_lockfile
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas      2579 Apr 15 11:20 pandaJob.out
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas       467 Apr 15 11:20 setup.sh.local
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas    984001 Apr 15 11:21 agis_schedconf.cvmfs.json
[2025-04-16 04:59:13] drwx------. 4 boincer umatlas      4096 Apr 15 11:22 pilot3
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas      6673 Apr 16 04:56 init_data.xml
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas 191291867 Apr 16 04:56 HITS.44075483._026136.pool.root.1
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas       531 Apr 16 04:56 boinc_task_state.xml
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas      1052 Apr 16 04:58 memory_monitor_summary.json
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas   1603529 Apr 16 04:58 agis_ddmendpoints.agis.ALL.json
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas    791078 Apr 16 04:58 log.44075483._026136.job.log.tgz.1
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas        95 Apr 16 04:58 pilot_heartbeat.json
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas      7745 Apr 16 04:58 heartbeat.json
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas      8192 Apr 16 04:59 boinc_mmap_file
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas      4476 Apr 16 04:59 pilotlog.txt
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas        28 Apr 16 04:59 wrapper_checkpoint.txt
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas   4500688 Apr 16 04:59 log.44075483._026136.job.log.1
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas       357 Apr 16 04:59 output.list
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas       620 Apr 16 04:59 runtime_log
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas   5314560 Apr 16 04:59 result.tar.gz
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas     11406 Apr 16 04:59 runtime_log.err
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas       658 Apr 16 04:59 2mVNDmA1qO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm0qXLDmtgEYEn.diag
[2025-04-16 04:59:13] -rw-r--r--. 1 boincer umatlas     21586 Apr 16 04:59 stderr.txt
[2025-04-16 04:59:13] HITS file was successfully produced:
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas 191291867 Apr 16 04:56 shared/HITS.pool.root.1
[2025-04-16 04:59:13]  *** Contents of shared directory: ***
[2025-04-16 04:59:13] total 411532
[2025-04-16 04:59:13] -rw-r--r--. 2 boincer umatlas 224256647 Apr 15 11:20 ATLAS.root_0
[2025-04-16 04:59:13] -rw-r--r--. 2 boincer umatlas     17569 Apr 15 11:20 start_atlas.sh
[2025-04-16 04:59:13] -rw-r--r--. 2 boincer umatlas    508897 Apr 15 11:20 input.tar.gz
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas 191291867 Apr 16 04:56 HITS.pool.root.1
[2025-04-16 04:59:13] -rw-------. 1 boincer umatlas   5314560 Apr 16 04:59 result.tar.gz
04:59:14 (511425): run_atlas exited; CPU time 53723.844256
04:59:14 (511425): called boinc_finish(0)

</stderr_txt>
]]>

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