Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:35:23 (79851): wrapper (7.7.26015): starting
08:35:23 (79851): wrapper: running run_atlas (--nthreads 8)
[2025-04-15 08:35:23] Arguments: --nthreads 8
[2025-04-15 08:35:23] Threads: 8
[2025-04-15 08:35:23] Checking for CVMFS
[2025-04-15 08:35:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 08:35:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 08:35:24] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 08:35:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 08:35:25] 2.11.2.0 21107 14826 146764 144888 1 247 11999694 18432001 29442 130560 0 92131664 98.623 275303992 59222 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-15 08:35:25] CVMFS is ok
[2025-04-15 08:35:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 08:35:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 08:35:25] Further information can be found at the LHC@home message board.
[2025-04-15 08:35:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 08:35:25] Checking for apptainer binary...
[2025-04-15 08:35:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 08:35:25] Running /usr/bin/apptainer --version
[2025-04-15 08:35:25] apptainer version 1.3.2-1.el7
[2025-04-15 08:35:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 08:35:42] c-212-4.aglt2.org
[2025-04-15 08:35:42] apptainer works
[2025-04-15 08:35:42] Set ATHENA_PROC_NUMBER=8
[2025-04-15 08:35:42] Set ATHENA_CORE_NUMBER=8
[2025-04-15 08:35:42] Starting ATLAS job with PandaID=6600640036
[2025-04-15 08:35:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-15 12:56:06]  *** The last 200 lines of the pilot log: ***
[2025-04-15 12:56:06] 2025-04-15 16:55:51,828 | INFO     | mean y: 2365425.28685259
[2025-04-15 12:56:06] 2025-04-15 16:55:51,828 | INFO     | -- intersect: -66280561577.035904
[2025-04-15 12:56:06] 2025-04-15 16:55:51,828 | INFO     | intersect: -66280561577.035904
[2025-04-15 12:56:06] 2025-04-15 16:55:51,828 | INFO     | chi2: 8.25810125384463
[2025-04-15 12:56:06] 2025-04-15 16:55:51,828 | INFO     | sum of square deviations: 4616038967.532544
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | sum of deviations: 198996272100.4635
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | mean x: 1744728331.5894308
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | mean y: 2372032.024390244
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | -- intersect: -75212424952.22795
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | intersect: -75212424952.22795
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | chi2: 7.462575408988135
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | current chi2=7.462575408988135 (change=9.633277921920993 %)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,830 | INFO     | right removable region: 245
[2025-04-15 12:56:06] 2025-04-15 16:55:51,831 | INFO     | sum of square deviations: 4616025547.532544
[2025-04-15 12:56:06] 2025-04-15 16:55:51,832 | INFO     | sum of deviations: 112818262822.36581
[2025-04-15 12:56:06] 2025-04-15 16:55:51,832 | INFO     | mean x: 1744728636.5894308
[2025-04-15 12:56:06] 2025-04-15 16:55:51,832 | INFO     | mean y: 2404357.7560975607
[2025-04-15 12:56:06] 2025-04-15 16:55:51,832 | INFO     | -- intersect: -42639745658.43521
[2025-04-15 12:56:06] 2025-04-15 16:55:51,832 | INFO     | intersect: -42639745658.43521
[2025-04-15 12:56:06] 2025-04-15 16:55:51,832 | INFO     | chi2: 4.547606673505645
[2025-04-15 12:56:06] 2025-04-15 16:55:51,832 | INFO     | current chi2=4.547606673505645 (change=44.93157042136693 %)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,833 | INFO     | sum of square deviations: 4340227619.991701
[2025-04-15 12:56:06] 2025-04-15 16:55:51,834 | INFO     | sum of deviations: 58913510230.48126
[2025-04-15 12:56:06] 2025-04-15 16:55:51,834 | INFO     | mean x: 1744728789.0912864
[2025-04-15 12:56:06] 2025-04-15 16:55:51,834 | INFO     | mean y: 2434152.7053941907
[2025-04-15 12:56:06] 2025-04-15 16:55:51,834 | INFO     | -- intersect: -23680217165.41631
[2025-04-15 12:56:06] 2025-04-15 16:55:51,834 | INFO     | intersect: -23680217165.41631
[2025-04-15 12:56:06] 2025-04-15 16:55:51,834 | INFO     | chi2: 2.7167038596305098
[2025-04-15 12:56:06] 2025-04-15 16:55:51,834 | INFO     | current chi2=2.7167038596305098 (change=40.26079969804721 %)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,835 | INFO     | sum of square deviations: 4075639204.949157
[2025-04-15 12:56:06] 2025-04-15 16:55:51,836 | INFO     | sum of deviations: 7477072328.288136
[2025-04-15 12:56:06] 2025-04-15 16:55:51,836 | INFO     | mean x: 1744728941.5932202
[2025-04-15 12:56:06] 2025-04-15 16:55:51,836 | INFO     | mean y: 2463802.805084746
[2025-04-15 12:56:06] 2025-04-15 16:55:51,836 | INFO     | -- intersect: -3198375092.2837296
[2025-04-15 12:56:06] 2025-04-15 16:55:51,836 | INFO     | intersect: -3198375092.2837296
[2025-04-15 12:56:06] 2025-04-15 16:55:51,836 | INFO     | chi2: 1.058311121163412
[2025-04-15 12:56:06] 2025-04-15 16:55:51,836 | INFO     | current chi2=1.058311121163412 (change=61.04429574052471 %)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,837 | INFO     | sum of square deviations: 3822027739.9047775
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | sum of deviations: -9148035056.42857
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | mean x: 1744729094.0952382
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | mean y: 2473759.701298701
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | -- intersect: 4178488169.5683894
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | intersect: 4178488169.5683894
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | chi2: 0.8661433020386693
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | current chi2=0.8661433020386693 (change=18.157970305886106 %)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,838 | INFO     | left removable region: 40
[2025-04-15 12:56:06] 2025-04-15 16:55:51,839 | INFO     | sum of square deviations: 2671266882.41952
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | sum of deviations: 4198902271.3658543
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | mean x: 1744729521.0878048
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | mean y: 2484613.1463414636
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | -- intersect: -2740015133.7823935
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | intersect: -2740015133.7823935
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | chi2: 0.00046070730285178925
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | -- intersect: -2740015133.7823935
[2025-04-15 12:56:06] 2025-04-15 16:55:51,840 | INFO     | current memory leak: 1.57 B/s (using 205 data points, chi2=0.00)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | ..............................
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . Timing measurements:
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . get job = 0 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . initial setup = 4 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . payload setup = 62 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . stage-in = 0 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . payload execution = 15327 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . stage-out = 2 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,841 | INFO     | . log creation = 0 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,842 | INFO     | ..............................
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | 
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | job summary report
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | --------------------------------------------------
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | PanDA job id: 6600640036
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | task id: 44075164
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | errors: (none)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | pilot state: finished 
[2025-04-15 12:56:06] 2025-04-15 16:55:51,917 | INFO     | transexitcode: 0
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | exeerrorcode: 0
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | exeerrordiag: 
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | exitcode: 0
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | exitmsg: OK
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | cpuconsumptiontime: 36063 s
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | nevents: 400
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | neventsw: 0
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | pid: 52121
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | pgrp: 52121
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | corecount: 8
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | event service: False
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | sizes: {0: 2417276, 1: 2417276, 12: 2417304, 22: 2417332, 33: 2417360, 41: 2417622, 44: 2417778, 15393: 2448552, 15394: 2448551, 15398: 2457604, 15419: 2457718}
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | --------------------------------------------------
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | 
[2025-04-15 12:56:06] 2025-04-15 16:55:51,918 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | job 6600640036 has completed (purged errors)
[2025-04-15 12:56:06] 2025-04-15 16:55:51,939 | INFO     | overall cleanup function is called
[2025-04-15 12:56:06] 2025-04-15 16:55:52,947 | INFO     | --- collectZombieJob: --- 10, [52121]
[2025-04-15 12:56:06] 2025-04-15 16:55:52,948 | INFO     | zombie collector waiting for pid 52121
[2025-04-15 12:56:06] 2025-04-15 16:55:52,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-15 12:56:06] 2025-04-15 16:55:52,948 | INFO     | collected zombie processes
[2025-04-15 12:56:06] 2025-04-15 16:55:52,948 | INFO     | will attempt to kill all subprocesses of pid=52121
[2025-04-15 12:56:06] 2025-04-15 16:55:53,234 | INFO     | process IDs to be killed: [52121] (in reverse order)
[2025-04-15 12:56:06] 2025-04-15 16:55:53,421 | WARNING  | found no corresponding commands to process id(s)
[2025-04-15 12:56:06] 2025-04-15 16:55:53,422 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-15 12:56:06] 2025-04-15 16:55:53,439 | INFO     | did not find any defunct processes belonging to 52121
[2025-04-15 12:56:06] 2025-04-15 16:55:53,453 | INFO     | did not find any defunct processes belonging to 52121
[2025-04-15 12:56:06] 2025-04-15 16:55:53,454 | INFO     | ready for new job
[2025-04-15 12:56:06] 2025-04-15 16:55:53,454 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-15 12:56:06] 2025-04-15 16:55:53,456 | INFO     | **************************************
[2025-04-15 12:56:06] 2025-04-15 16:55:53,456 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-15 12:56:06] 2025-04-15 16:55:53,456 | INFO     | **************************************
[2025-04-15 12:56:06] 2025-04-15 16:55:53,456 | INFO     | 
[2025-04-15 12:56:06] 2025-04-15 16:55:53,461 | INFO     | architecture information:
[2025-04-15 12:56:06] 2025-04-15 16:55:53,471 | INFO     | executing command: cat /etc/os-release
[2025-04-15 12:56:06] 2025-04-15 16:55:53,543 | INFO     | cat /etc/os-release:
[2025-04-15 12:56:06] NAME="CentOS Linux"
[2025-04-15 12:56:06] VERSION="7 (Core)"
[2025-04-15 12:56:06] ID="centos"
[2025-04-15 12:56:06] ID_LIKE="rhel fedora"
[2025-04-15 12:56:06] VERSION_ID="7"
[2025-04-15 12:56:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-15 12:56:06] ANSI_COLOR="0;31"
[2025-04-15 12:56:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-15 12:56:06] HOME_URL="https://www.centos.org/"
[2025-04-15 12:56:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-15 12:56:06] 
[2025-04-15 12:56:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-15 12:56:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-15 12:56:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-15 12:56:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-15 12:56:06] 
[2025-04-15 12:56:06] 2025-04-15 16:55:53,543 | INFO     | **************************************
[2025-04-15 12:56:06] 2025-04-15 16:55:54,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-04-15 12:56:06] 2025-04-15 16:55:54,161 | INFO     | sufficient remaining disk space (103077117952 B)
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | INFO     | current server update state: UPDATING_FINAL
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | INFO     | update_server=False
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | INFO     | found 0 job(s) in 20 queues
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-15 12:56:06] 2025-04-15 16:55:54,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-15 12:56:06] 2025-04-15 16:55:54,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-15 12:56:06] 2025-04-15 16:55:54,200 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-15 12:56:06] 2025-04-15 16:55:54,201 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-15 12:56:06] 2025-04-15 16:55:54,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-15 12:56:06] 2025-04-15 16:55:54,202 | INFO     | will abort loop
[2025-04-15 12:56:06] 2025-04-15 16:55:54,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-15 12:56:06] 2025-04-15 16:55:54,525 | INFO     | all payload control threads have been joined
[2025-04-15 12:56:06] 2025-04-15 16:55:55,013 | INFO     | all data control threads have been joined
[2025-04-15 12:56:06] 2025-04-15 16:55:55,150 | INFO     | all job control threads have been joined
[2025-04-15 12:56:06] 2025-04-15 16:55:55,168 | INFO     | [job] retrieve thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:55,171 | INFO     | [payload] failed_post thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:55,209 | INFO     | [job] job monitor thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:55,244 | INFO     | [payload] validate_pre thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:55,299 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:55,531 | INFO     | [payload] control thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:55,574 | INFO     | [job] validate thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:55,587 | INFO     | [payload] execute_payloads thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:56,020 | INFO     | [data] control thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:56,101 | INFO     | [data] copytool_in thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:56,151 | INFO     | [job] control thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:56,170 | INFO     | [data] copytool_out thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:56,398 | INFO     | [payload] validate_post thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:56,644 | INFO     | [job] create_data_payload thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:56,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-15 12:56:06] 2025-04-15 16:55:57,938 | INFO     | [job] queue monitor thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:58,435 | INFO     | [data] queue_monitor thread has finished
[2025-04-15 12:56:06] 2025-04-15 16:55:59,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140297474262848)>', '<ExcThread(monitor, started 140297027700480)>']
[2025-04-15 12:56:06] 2025-04-15 16:56:00,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-15 12:56:06] 2025-04-15 16:56:00,203 | INFO     | [monitor] control thread has ended
[2025-04-15 12:56:06] 2025-04-15 16:56:04,394 | INFO     | all workflow threads have been joined
[2025-04-15 12:56:06] 2025-04-15 16:56:04,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-15 12:56:06] 2025-04-15 16:56:04,395 | INFO     | traces error code: 0
[2025-04-15 12:56:06] 2025-04-15 16:56:04,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-15 12:56:06] 2025-04-15 16:56:05,087 [wrapper] ==== pilot stdout END ====
[2025-04-15 12:56:06] 2025-04-15 16:56:05,093 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-15 12:56:06] 2025-04-15 16:56:05,099 [wrapper] pilotpid: 5820
[2025-04-15 12:56:06] 2025-04-15 16:56:05,130 [wrapper] Pilot exit status: 0
[2025-04-15 12:56:06] 2025-04-15 16:56:05,314 [wrapper] pandaids: 6600640036
[2025-04-15 12:56:06] 2025-04-15 16:56:05,582 [wrapper] cleanup supervisor_pilot 52326 5822
[2025-04-15 12:56:06] 2025-04-15 16:56:05,621 [wrapper] Test setup, not cleaning
[2025-04-15 12:56:06] 2025-04-15 16:56:05,673 [wrapper] apfmon messages muted
[2025-04-15 12:56:06] 2025-04-15 16:56:05,676 [wrapper] ==== wrapper stdout END ====
[2025-04-15 12:56:06] 2025-04-15 16:56:05,746 [wrapper] ==== wrapper stderr END ====
[2025-04-15 12:56:06]  *** Error codes and diagnostics ***
[2025-04-15 12:56:06]     "exeErrorCode": 0,
[2025-04-15 12:56:06]     "exeErrorDiag": "",
[2025-04-15 12:56:06]     "pilotErrorCode": 0,
[2025-04-15 12:56:06]     "pilotErrorDiag": "",
[2025-04-15 12:56:06]  *** Listing of results directory ***
[2025-04-15 12:56:06] total 415576
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas    495897 Apr 12 21:47 pilot3.tar.gz
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas      5111 Apr 12 21:50 queuedata.json
[2025-04-15 12:56:06] -rwx------ 1 boincer umatlas     37140 Apr 12 21:51 runpilot2-wrapper.sh
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas       100 Apr 15 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-15 12:56:06] -rwxr-xr-x 1 boincer umatlas      7986 Apr 15 08:35 run_atlas
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas       105 Apr 15 08:35 job.xml
[2025-04-15 12:56:06] -rw-r--r-- 2 boincer umatlas 222043724 Apr 15 08:35 EVNT.44075162._002012.pool.root.1
[2025-04-15 12:56:06] -rw-r--r-- 2 boincer umatlas     17569 Apr 15 08:35 start_atlas.sh
[2025-04-15 12:56:06] drwxrwx--x 2 boincer umatlas      4096 Apr 15 08:35 shared
[2025-04-15 12:56:06] -rw-r--r-- 2 boincer umatlas    508878 Apr 15 08:35 input.tar.gz
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas         0 Apr 15 08:35 boinc_lockfile
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas      2549 Apr 15 08:35 pandaJob.out
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas       467 Apr 15 08:35 setup.sh.local
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas    984001 Apr 15 08:37 agis_schedconf.cvmfs.json
[2025-04-15 12:56:06] drwx------ 4 boincer umatlas      4096 Apr 15 08:37 pilot3
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas      6388 Apr 15 12:46 init_data.xml
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas 196279903 Apr 15 12:54 HITS.44075164._051636.pool.root.1
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas       531 Apr 15 12:54 boinc_task_state.xml
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas      1103 Apr 15 12:55 memory_monitor_summary.json
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas   1603529 Apr 15 12:55 agis_ddmendpoints.agis.ALL.json
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas    409925 Apr 15 12:55 log.44075164._051636.job.log.tgz.1
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas        95 Apr 15 12:55 pilot_heartbeat.json
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas      7760 Apr 15 12:55 heartbeat.json
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas      4663 Apr 15 12:56 pilotlog.txt
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas   1284418 Apr 15 12:56 log.44075164._051636.job.log.1
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas        28 Apr 15 12:56 wrapper_checkpoint.txt
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas       357 Apr 15 12:56 output.list
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas       620 Apr 15 12:56 runtime_log
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas   1710080 Apr 15 12:56 result.tar.gz
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas      8192 Apr 15 12:56 boinc_mmap_file
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas       662 Apr 15 12:56 YLgNDmpg1N7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm1oSLDm8Tcmam.diag
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas     11414 Apr 15 12:56 runtime_log.err
[2025-04-15 12:56:06] -rw-r--r-- 1 boincer umatlas     20906 Apr 15 12:56 stderr.txt
[2025-04-15 12:56:06] HITS file was successfully produced:
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas 196279903 Apr 15 12:54 shared/HITS.pool.root.1
[2025-04-15 12:56:06]  *** Contents of shared directory: ***
[2025-04-15 12:56:06] total 410716
[2025-04-15 12:56:06] -rw-r--r-- 2 boincer umatlas 222043724 Apr 15 08:35 ATLAS.root_0
[2025-04-15 12:56:06] -rw-r--r-- 2 boincer umatlas     17569 Apr 15 08:35 start_atlas.sh
[2025-04-15 12:56:06] -rw-r--r-- 2 boincer umatlas    508878 Apr 15 08:35 input.tar.gz
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas 196279903 Apr 15 12:54 HITS.pool.root.1
[2025-04-15 12:56:06] -rw------- 1 boincer umatlas   1710080 Apr 15 12:56 result.tar.gz
12:56:08 (79851): run_atlas exited; CPU time 35787.439914
12:56:08 (79851): called boinc_finish(0)

</stderr_txt>
]]>

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