Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 15:00:54 (6104): Detected: vboxwrapper 26206
2025-04-15 15:00:54 (6104): Detected: BOINC client v8.0.2
2025-04-15 15:00:55 (6104): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-15 15:00:55 (6104): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 15:00:56 (6104): Create VM. (boinc_da9f13b94fea2e3b, slot#0)
2025-04-15 15:00:56 (6104): Setting Memory Size for VM. (4700MB)
2025-04-15 15:00:57 (6104): Setting CPU Count for VM. (7)
2025-04-15 15:00:57 (6104): Setting Chipset Options for VM.
2025-04-15 15:00:57 (6104): Setting Graphics Controller Options for VM.
2025-04-15 15:00:58 (6104): Setting Boot Options for VM.
2025-04-15 15:00:58 (6104): Setting Network Configuration for NAT.
2025-04-15 15:00:58 (6104): Enabling VM Network Access.
2025-04-15 15:00:58 (6104): Disabling USB Support for VM.
2025-04-15 15:00:59 (6104): Disabling COM Port Support for VM.
2025-04-15 15:00:59 (6104): Disabling LPT Port Support for VM.
2025-04-15 15:00:59 (6104): Disabling Audio Support for VM.
2025-04-15 15:01:00 (6104): Disabling Clipboard Support for VM.
2025-04-15 15:01:00 (6104): Disabling Drag and Drop Support for VM.
2025-04-15 15:01:00 (6104): Adding storage controller(s) to VM.
2025-04-15 15:01:00 (6104): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 15:01:03 (6104): Adding VirtualBox Guest Additions to VM.
2025-04-15 15:01:04 (6104): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 15:01:04 (6104): forwarding host port 51364 to guest port 80
2025-04-15 15:01:04 (6104): Enabling remote desktop for VM.
2025-04-15 15:01:04 (6104): Required extension pack not installed, remote desktop not enabled.
2025-04-15 15:01:04 (6104): Enabling shared directory for VM.
2025-04-15 15:01:05 (6104): Starting VM using VBoxManage interface. (boinc_da9f13b94fea2e3b, slot#0)
2025-04-15 15:01:11 (6104): Successfully started VM. (PID = '4228')
2025-04-15 15:01:11 (6104): Reporting VM Process ID to BOINC.
2025-04-15 15:01:11 (6104): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-15 15:01:11 (6104): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 15:01:11 (6104): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 15:01:11 (6104): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 15:01:11 (6104): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 15:01:11 (6104): Detected: Web Application Enabled (http://localhost:51364)
2025-04-15 15:01:11 (6104): Preference change detected
2025-04-15 15:01:11 (6104): Setting CPU throttle for VM. (90%)
2025-04-15 15:01:12 (6104): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 15:01:13 (6104): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 15:01:13 (6104): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 15:01:19 (6104): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 15:01:19 (6104): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 15:01:19 (6104): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 15:01:29 (6104): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 15:01:29 (6104): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 15:01:46 (6104): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.000219 main     Log opened 2025-04-15T15:01:45.240810000Z
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.000420 main     OS Product: Linux
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.000492 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.000544 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.000599 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.000600 main     Process ID: 1326
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.000601 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 15:01:46 (6104): Guest Log: 00:00:00.001623 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 15:01:47 (6104): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 15:01:47 (6104): Guest Log: [INFO] Mounting shared directory
2025-04-15 15:01:47 (6104): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 15:01:52 (6104): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 15:01:52 (6104): Guest Log: [INFO] Detected branch: prod
2025-04-15 15:01:53 (6104): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 15:01:53 (6104): Guest Log: Copying input files
2025-04-15 15:01:55 (6104): Guest Log: Copied input files into RunAtlas.
2025-04-15 15:01:55 (6104): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-15 15:01:55 (6104): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-15 15:01:55 (6104): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-15 15:01:55 (6104): Guest Log: Further information can be found at the LHC@home message board.
2025-04-15 15:01:56 (6104): Guest Log: 00:00:10.015505 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 547 277 000ns (GuestNow=1 744 718 516 698 381 000 ns GuestLast=1 744 729 305 245 658 000 ns fSetTimeLastLoop=true )
2025-04-15 15:02:07 (6104): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 15:02:08 (6104): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 15:02:08 (6104): Guest Log: 2.6.3.0 1604 0 32156 144887 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-15 15:02:12 (6104): Guest Log: copied the webapp to /var/www
2025-04-15 15:02:12 (6104): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-15 15:02:12 (6104): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-15 15:02:13 (6104): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 15:02:13 (6104): Guest Log:  *** Starting ATLAS job. (PandaID=6603681232 taskID=44075483) ***
2025-04-15 16:41:18 (6104): Status Report: Elapsed Time: '6000.000000'
2025-04-15 16:41:18 (6104): Status Report: CPU Time: '30263.406250'
2025-04-15 18:21:24 (6104): Status Report: Elapsed Time: '12000.000000'
2025-04-15 18:21:24 (6104): Status Report: CPU Time: '67873.718750'
2025-04-15 20:01:33 (6104): Status Report: Elapsed Time: '18000.000000'
2025-04-15 20:01:33 (6104): Status Report: CPU Time: '104008.750000'
2025-04-15 20:01:45 (6104): Guest Log:  *** Job finished ***
2025-04-15 20:01:45 (6104): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:31,913 | INFO     | [payload] execute_payloads thread has finished
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:32,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:36,355 | INFO     | [data] queue_monitor thread has finished
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:37,646 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523190261568)>', '<ExcThread(monitor, started 140521917896448)>']
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:37,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:37,972 | INFO     | [monitor] control thread has ended
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,651 | INFO     | all workflow threads have been joined
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,652 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,652 | INFO     | traces error code: 0
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,814 [wrapper] ==== pilot stdout END ====
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,821 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,827 [wrapper] pilotpid: 5969
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,834 [wrapper] Pilot exit status: 0
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:42,984 [wrapper] pandaids: 6603681232
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:43,024 [wrapper] cleanup supervisor_pilot 17727 5970
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:43,031 [wrapper] Test setup, not cleaning
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:43,037 [wrapper] apfmon messages muted
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:43,043 [wrapper] ==== wrapper stdout END ====
2025-04-15 20:01:45 (6104): Guest Log: 2025-04-15 17:01:43,050 [wrapper] ==== wrapper stderr END ====
2025-04-15 20:01:45 (6104): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 20:01:45 (6104): Guest Log:     "exeErrorCode": 0,
2025-04-15 20:01:45 (6104): Guest Log:     "exeErrorDiag": "",
2025-04-15 20:01:45 (6104): Guest Log:     "pilotErrorCode": 0,
2025-04-15 20:01:45 (6104): Guest Log:     "pilotErrorDiag": "",
2025-04-15 20:01:45 (6104): Guest Log:  *** Listing of results directory ***
2025-04-15 20:01:45 (6104): Guest Log: total 203632
2025-04-15 20:01:45 (6104): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 15 07:47 pilot3.tar.gz
2025-04-15 20:01:45 (6104): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 15 07:54 runpilot2-wrapper.sh
2025-04-15 20:01:45 (6104): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 15 07:54 queuedata.json
2025-04-15 20:01:45 (6104): Guest Log: -rwxr-xr-x. 1 atlas atlas      8862 Apr 15 12:01 init_data.xml
2025-04-15 20:01:45 (6104): Guest Log: -rwxr-xr-x. 1 atlas atlas    508893 Apr 15 12:01 input.tar.gz
2025-04-15 20:01:45 (6104): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 15 12:01 start_atlas.sh
2025-04-15 20:01:45 (6104): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 15 12:01 EVNT.44075481._001005.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 20:01:45 (6104): Guest Log: -rw-r--r--. 1 atlas atlas      2575 Apr 15 12:02 pandaJob.out
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas       424 Apr 15 12:02 setup.sh.local
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas    983993 Apr 15 12:03 agis_schedconf.cvmfs.json
2025-04-15 20:01:45 (6104): Guest Log: drwx------. 4 atlas atlas      4096 Apr 15 12:03 pilot3
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas 201186875 Apr 15 17:00 HITS.44075483._025757.pool.root.1
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas        95 Apr 15 17:00 pilot_heartbeat.json
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas      1054 Apr 15 17:00 memory_monitor_summary.json
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 17:01 agis_ddmendpoints.agis.ALL.json
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas    380643 Apr 15 17:01 log.44075483._025757.job.log.tgz.1
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas      7720 Apr 15 17:01 heartbeat.json
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 15 17:01 pilotlog.txt
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas   1399924 Apr 15 17:01 log.44075483._025757.job.log.1
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 17:01 output.list
2025-04-15 20:01:45 (6104): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 17:01 runtime_log
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas   1802240 Apr 15 17:01 result.tar.gz
2025-04-15 20:01:45 (6104): Guest Log: -rw-r--r--. 1 atlas atlas     10908 Apr 15 17:01 runtime_log.err
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas       652 Apr 15 17:01 oqCMDmFJqO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmCH1KDmm6O6Rn.diag
2025-04-15 20:01:45 (6104): Guest Log: Looking for outputfile HITS.44075483._025757.pool.root.1
2025-04-15 20:01:45 (6104): Guest Log: HITS file was successfully produced
2025-04-15 20:01:45 (6104): Guest Log: -rw-------. 1 atlas atlas 201186875 Apr 15 17:00 /home/atlas/RunAtlas/HITS.44075483._025757.pool.root.1
2025-04-15 20:01:47 (6104): Guest Log: Successfully finished the ATLAS job!
2025-04-15 20:01:47 (6104): Guest Log: Copying the results back to the shared directory!
2025-04-15 20:01:47 (6104): Guest Log:  *** Contents of shared directory: ***
2025-04-15 20:01:47 (6104): Guest Log: total 419528
2025-04-15 20:01:47 (6104): Guest Log: -rwxrwxrwx. 1 root root 226059661 Apr 15 12:00 ATLAS.root_0
2025-04-15 20:01:47 (6104): Guest Log: -rwxrwxrwx. 1 root root 201186875 Apr 15 17:01 HITS.pool.root.1
2025-04-15 20:01:47 (6104): Guest Log: -rwxrwxrwx. 1 root root      8862 Apr 15 12:00 init_data.xml
2025-04-15 20:01:47 (6104): Guest Log: -rwxrwxrwx. 1 root root    508893 Apr 15 12:00 input.tar.gz
2025-04-15 20:01:47 (6104): Guest Log: -rwxrwxrwx. 1 root root   1802240 Apr 15 17:01 result.tar.gz
2025-04-15 20:01:47 (6104): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 15 12:00 start_atlas.sh
2025-04-15 20:01:47 (6104): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 20:01:47 (6104): VM Completion File Detected.
2025-04-15 20:01:47 (6104): Powering off VM.
2025-04-15 20:01:48 (6104): Successfully stopped VM.
2025-04-15 20:01:48 (6104): Deregistering VM. (boinc_da9f13b94fea2e3b, slot#0)
2025-04-15 20:01:48 (6104): Removing network bandwidth throttle group from VM.
2025-04-15 20:01:48 (6104): Removing VM from VirtualBox.
20:01:54 (6104): called boinc_finish(0)

</stderr_txt>
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