Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 13:45:24 (22108): Detected: vboxwrapper 26206
2025-04-15 13:45:24 (22108): Detected: BOINC client v8.0.2
2025-04-15 13:45:24 (22108): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-15 13:45:24 (22108): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 13:45:25 (22108): Create VM. (boinc_67a03041f7a15253, slot#10)
2025-04-15 13:45:25 (22108): Setting Memory Size for VM. (4800MB)
2025-04-15 13:45:26 (22108): Setting CPU Count for VM. (8)
2025-04-15 13:45:26 (22108): Setting Chipset Options for VM.
2025-04-15 13:45:26 (22108): Setting Graphics Controller Options for VM.
2025-04-15 13:45:26 (22108): Setting Boot Options for VM.
2025-04-15 13:45:27 (22108): Setting Network Configuration for NAT.
2025-04-15 13:45:27 (22108): Enabling VM Network Access.
2025-04-15 13:45:27 (22108): Disabling USB Support for VM.
2025-04-15 13:45:27 (22108): Disabling COM Port Support for VM.
2025-04-15 13:45:28 (22108): Disabling LPT Port Support for VM.
2025-04-15 13:45:28 (22108): Disabling Audio Support for VM.
2025-04-15 13:45:28 (22108): Disabling Clipboard Support for VM.
2025-04-15 13:45:28 (22108): Disabling Drag and Drop Support for VM.
2025-04-15 13:45:29 (22108): Adding storage controller(s) to VM.
2025-04-15 13:45:29 (22108): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 13:45:29 (22108): Adding VirtualBox Guest Additions to VM.
2025-04-15 13:45:30 (22108): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 13:45:30 (22108): forwarding host port 61188 to guest port 80
2025-04-15 13:45:30 (22108): Enabling remote desktop for VM.
2025-04-15 13:45:31 (22108): Enabling shared directory for VM.
2025-04-15 13:45:31 (22108): Starting VM using VBoxManage interface. (boinc_67a03041f7a15253, slot#10)
2025-04-15 13:45:36 (22108): Successfully started VM. (PID = '24976')
2025-04-15 13:45:36 (22108): Reporting VM Process ID to BOINC.
2025-04-15 13:45:36 (22108): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-15 13:45:36 (22108): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 13:45:36 (22108): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 13:45:36 (22108): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 13:45:36 (22108): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 13:45:36 (22108): Detected: Web Application Enabled (http://localhost:61188)
2025-04-15 13:45:36 (22108): Detected: Remote Desktop Enabled (localhost:61189)
2025-04-15 13:45:36 (22108): Preference change detected
2025-04-15 13:45:36 (22108): Setting CPU throttle for VM. (90%)
2025-04-15 13:45:36 (22108): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 13:45:38 (22108): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 13:45:38 (22108): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 13:45:41 (22108): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 13:45:41 (22108): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 13:45:41 (22108): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 13:45:46 (22108): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 13:45:46 (22108): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 13:45:50 (22108): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.000198 main     Log opened 2025-04-15T13:45:48.770152000Z
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.000318 main     OS Product: Linux
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.000348 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.000372 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.000419 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.000419 main     Process ID: 1367
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.000419 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 13:45:50 (22108): Guest Log: 00:00:00.001122 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 13:45:50 (22108): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 13:45:50 (22108): Guest Log: [INFO] Mounting shared directory
2025-04-15 13:45:50 (22108): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 13:45:53 (22108): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 13:45:53 (22108): Guest Log: [INFO] Detected branch: prod
2025-04-15 13:45:53 (22108): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 13:45:53 (22108): Guest Log: Copying input files
2025-04-15 13:45:54 (22108): Guest Log: Copied input files into RunAtlas.
2025-04-15 13:45:54 (22108): Guest Log: Detected user-configured HTTP proxy at http://proxy.kippola.kiulu10clients.net:3128 - will set in /etc/cvmfs/default.local
2025-04-15 13:46:00 (22108): Guest Log: 00:00:10.003528 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 789 237 935 000ns (GuestNow=1 744 713 959 534 750 000 ns GuestLast=1 744 724 748 772 685 000 ns fSetTimeLastLoop=true )
2025-04-15 13:46:02 (22108): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 13:46:03 (22108): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 13:46:03 (22108): Guest Log: 2.6.3.0 1644 0 29800 144884 4 1 3119946 4096000 0 65024 0 0 n/a 1170 1683 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2025-04-15 13:46:03 (22108): Guest Log: copied the webapp to /var/www
2025-04-15 13:46:04 (22108): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-15 13:46:04 (22108): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-15 13:46:04 (22108): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 13:46:04 (22108): Guest Log:  *** Starting ATLAS job. (PandaID=6602114741 taskID=44075483) ***
2025-04-15 13:49:06 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 13:49:26 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 13:49:56 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 13:50:17 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:06:18 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:06:38 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:13:58 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:14:18 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:27:00 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:27:20 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:27:40 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:28:01 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:33:41 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:34:01 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:35:51 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:36:11 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:44:53 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:45:13 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:53:24 (22108): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:53:44 (22108): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:57:11 (22108): Guest Log:  *** Job finished ***
2025-04-15 14:57:11 (22108): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:40,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:41,027 | INFO     | [job] queue monitor thread has finished
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:43,550 | INFO     | [data] queue_monitor thread has finished
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:44,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140177806972736)>', '<ExcThread(monitor, started 140176986728192)>']
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:44,198 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:44,198 | INFO     | [monitor] control thread has ended
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,170 | INFO     | all workflow threads have been joined
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,170 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,170 | INFO     | traces error code: 0
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,243 [wrapper] ==== pilot stdout END ====
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,247 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,252 [wrapper] pilotpid: 5997
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,256 [wrapper] Pilot exit status: 0
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,281 [wrapper] pandaids: 6602114741
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,309 [wrapper] cleanup supervisor_pilot 31046 5998
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,315 [wrapper] Test setup, not cleaning
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,319 [wrapper] apfmon messages muted
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,323 [wrapper] ==== wrapper stdout END ====
2025-04-15 14:57:11 (22108): Guest Log: 2025-04-15 11:53:49,327 [wrapper] ==== wrapper stderr END ====
2025-04-15 14:57:11 (22108): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 14:57:11 (22108): Guest Log:     "exeErrorCode": 0,
2025-04-15 14:57:11 (22108): Guest Log:     "exeErrorDiag": "",
2025-04-15 14:57:11 (22108): Guest Log:     "pilotErrorCode": 0,
2025-04-15 14:57:11 (22108): Guest Log:     "pilotErrorDiag": "",
2025-04-15 14:57:11 (22108): Guest Log:  *** Listing of results directory ***
2025-04-15 14:57:11 (22108): Guest Log: total 190824
2025-04-15 14:57:11 (22108): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 03:25 queuedata.json
2025-04-15 14:57:11 (22108): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 03:26 runpilot2-wrapper.sh
2025-04-15 14:57:11 (22108): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 03:26 pilot3.tar.gz
2025-04-15 14:57:11 (22108): Guest Log: -rwxr-xr-x. 1 atlas atlas      9263 Apr 15 10:45 init_data.xml
2025-04-15 14:57:11 (22108): Guest Log: -rwxr-xr-x. 1 atlas atlas    508888 Apr 15 10:45 input.tar.gz
2025-04-15 14:57:11 (22108): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 15 10:45 start_atlas.sh
2025-04-15 14:57:11 (22108): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 15 10:45 EVNT.44075481._000483.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 14:57:11 (22108): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 15 10:46 pandaJob.out
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas       479 Apr 15 10:46 setup.sh.local
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas    983993 Apr 15 10:46 agis_schedconf.cvmfs.json
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 10:46 agis_ddmendpoints.agis.ALL.json
2025-04-15 14:57:11 (22108): Guest Log: drwx------. 4 atlas atlas      4096 Apr 15 10:46 pilot3
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas        95 Apr 15 11:52 pilot_heartbeat.json
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas 190276991 Apr 15 11:53 HITS.44075483._012279.pool.root.1
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas      1029 Apr 15 11:53 memory_monitor_summary.json
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas    299970 Apr 15 11:53 log.44075483._012279.job.log.tgz.1
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas      7716 Apr 15 11:53 heartbeat.json
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas      4722 Apr 15 11:53 pilotlog.txt
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas    375460 Apr 15 11:53 log.44075483._012279.job.log.1
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 11:53 output.list
2025-04-15 14:57:11 (22108): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 11:53 runtime_log
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas    696320 Apr 15 11:53 result.tar.gz
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas       650 Apr 15 11:53 SG5KDmFePO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmxzzKDmK0BtMo.diag
2025-04-15 14:57:11 (22108): Guest Log: -rw-r--r--. 1 atlas atlas     11409 Apr 15 11:53 runtime_log.err
2025-04-15 14:57:11 (22108): Guest Log: Looking for outputfile HITS.44075483._012279.pool.root.1
2025-04-15 14:57:11 (22108): Guest Log: HITS file was successfully produced
2025-04-15 14:57:11 (22108): Guest Log: -rw-------. 1 atlas atlas 190276991 Apr 15 11:53 /home/atlas/RunAtlas/HITS.44075483._012279.pool.root.1
2025-04-15 14:57:12 (22108): Guest Log: Successfully finished the ATLAS job!
2025-04-15 14:57:12 (22108): Guest Log: Copying the results back to the shared directory!
2025-04-15 14:57:12 (22108): Guest Log:  *** Contents of shared directory: ***
2025-04-15 14:57:12 (22108): Guest Log: total 407856
2025-04-15 14:57:12 (22108): Guest Log: -rwxrwxrwx. 1 root root 226122433 Apr 15 10:45 ATLAS.root_0
2025-04-15 14:57:12 (22108): Guest Log: -rwxrwxrwx. 1 root root 190276991 Apr 15  2025 HITS.pool.root.1
2025-04-15 14:57:12 (22108): Guest Log: -rwxrwxrwx. 1 root root      9263 Apr 15 10:45 init_data.xml
2025-04-15 14:57:12 (22108): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 15 06:26 input.tar.gz
2025-04-15 14:57:12 (22108): Guest Log: -rwxrwxrwx. 1 root root    696320 Apr 15  2025 result.tar.gz
2025-04-15 14:57:12 (22108): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 15 06:26 start_atlas.sh
2025-04-15 14:57:12 (22108): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 14:57:12 (22108): VM Completion File Detected.
2025-04-15 14:57:12 (22108): Powering off VM.
2025-04-15 14:57:13 (22108): Successfully stopped VM.
2025-04-15 14:57:13 (22108): Deregistering VM. (boinc_67a03041f7a15253, slot#10)
2025-04-15 14:57:13 (22108): Removing network bandwidth throttle group from VM.
2025-04-15 14:57:13 (22108): Removing VM from VirtualBox.
14:57:18 (22108): called boinc_finish(0)

</stderr_txt>
]]>

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