Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 15:07:23 (388): Detected: vboxwrapper 26206
2025-04-16 15:07:23 (388): Detected: BOINC client v8.0.2
2025-04-16 15:07:24 (388): Detected: VirtualBox VboxManage Interface (Version: 6.1.36)
2025-04-16 15:07:24 (388): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 15:07:25 (388): Create VM. (boinc_6062c602a9500b11, slot#0)
2025-04-16 15:07:25 (388): Setting Memory Size for VM. (4200MB)
2025-04-16 15:07:26 (388): Setting CPU Count for VM. (2)
2025-04-16 15:07:26 (388): Setting Chipset Options for VM.
2025-04-16 15:07:26 (388): Setting Graphics Controller Options for VM.
2025-04-16 15:07:27 (388): Setting Boot Options for VM.
2025-04-16 15:07:27 (388): Setting Network Configuration for NAT.
2025-04-16 15:07:27 (388): Enabling VM Network Access.
2025-04-16 15:07:27 (388): Disabling USB Support for VM.
2025-04-16 15:07:28 (388): Disabling COM Port Support for VM.
2025-04-16 15:07:28 (388): Disabling LPT Port Support for VM.
2025-04-16 15:07:28 (388): Disabling Audio Support for VM.
2025-04-16 15:07:28 (388): Disabling Clipboard Support for VM.
2025-04-16 15:07:29 (388): Disabling Drag and Drop Support for VM.
2025-04-16 15:07:29 (388): Adding storage controller(s) to VM.
2025-04-16 15:07:29 (388): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 15:07:30 (388): Adding VirtualBox Guest Additions to VM.
2025-04-16 15:07:30 (388): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 15:07:31 (388): forwarding host port 58256 to guest port 80
2025-04-16 15:07:31 (388): Enabling remote desktop for VM.
2025-04-16 15:07:31 (388): Enabling shared directory for VM.
2025-04-16 15:07:32 (388): Starting VM using VBoxManage interface. (boinc_6062c602a9500b11, slot#0)
2025-04-16 15:07:38 (388): Successfully started VM. (PID = '9724')
2025-04-16 15:07:38 (388): Reporting VM Process ID to BOINC.
2025-04-16 15:07:38 (388): Guest Log: BIOS: VirtualBox 6.1.36
2025-04-16 15:07:38 (388): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 15:07:38 (388): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 15:07:38 (388): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 15:07:38 (388): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 15:07:38 (388): Detected: Web Application Enabled (http://localhost:58256)
2025-04-16 15:07:38 (388): Detected: Remote Desktop Enabled (localhost:58257)
2025-04-16 15:07:38 (388): Preference change detected
2025-04-16 15:07:38 (388): Setting CPU throttle for VM. (100%)
2025-04-16 15:07:38 (388): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 15:07:40 (388): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 15:07:40 (388): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 15:07:43 (388): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 15:07:43 (388): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 15:07:43 (388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 15:07:48 (388): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 15:07:48 (388): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 15:07:55 (388): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.000161 main     Log opened 2025-04-16T15:07:52.525561000Z
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.000311 main     OS Product: Linux
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.000361 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.000405 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.000449 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.000450 main     Process ID: 1264
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.000451 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 15:07:55 (388): Guest Log: 00:00:00.002364 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 15:07:55 (388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 15:07:55 (388): Guest Log: [INFO] Mounting shared directory
2025-04-16 15:07:55 (388): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 15:08:00 (388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 15:08:00 (388): Guest Log: [INFO] Detected branch: prod
2025-04-16 15:08:00 (388): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 15:08:00 (388): Guest Log: Copying input files
2025-04-16 15:08:02 (388): Guest Log: Copied input files into RunAtlas.
2025-04-16 15:08:02 (388): Guest Log: Detected user-configured HTTP proxy at http://192.168.35.184:3128 - will set in /etc/cvmfs/default.local
2025-04-16 15:08:05 (388): Guest Log: 00:00:10.004285 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 847 942 000ns (GuestNow=1 744 808 884 681 348 000 ns GuestLast=1 744 816 072 529 290 000 ns fSetTimeLastLoop=true )
2025-04-16 15:08:11 (388): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 15:08:11 (388): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 15:08:11 (388): Guest Log: 2.6.3.0 1540 0 31564 144924 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
2025-04-16 15:08:12 (388): Guest Log: copied the webapp to /var/www
2025-04-16 15:08:12 (388): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-16 15:08:12 (388): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-16 15:08:12 (388): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 15:08:13 (388): Guest Log:  *** Starting ATLAS job. (PandaID=6602128784 taskID=44075483) ***
2025-04-16 16:47:39 (388): Status Report: Elapsed Time: '6000.000000'
2025-04-16 16:47:39 (388): Status Report: CPU Time: '11217.657508'
2025-04-16 18:27:40 (388): Status Report: Elapsed Time: '12000.000000'
2025-04-16 18:27:40 (388): Status Report: CPU Time: '23213.853606'
2025-04-16 20:07:41 (388): Status Report: Elapsed Time: '18000.000000'
2025-04-16 20:07:41 (388): Status Report: CPU Time: '35199.504036'
2025-04-16 21:43:49 (388): Guest Log:  *** Job finished ***
2025-04-16 21:43:49 (388): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:37,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:37,446 | INFO     | [data] copytool_out thread has finished
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:41,339 | INFO     | [data] queue_monitor thread has finished
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:43,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140214466475840)>', '<ExcThread(monitor, started 140213863032576)>']
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:43,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:43,773 | INFO     | [monitor] control thread has ended
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,281 | INFO     | all workflow threads have been joined
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,281 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,281 | INFO     | traces error code: 0
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,366 [wrapper] ==== pilot stdout END ====
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,371 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,376 [wrapper] pilotpid: 5841
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,381 [wrapper] Pilot exit status: 0
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,425 [wrapper] pandaids: 6602128784
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,455 [wrapper] cleanup supervisor_pilot 29526 5842
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,461 [wrapper] Test setup, not cleaning
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,466 [wrapper] apfmon messages muted
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,471 [wrapper] ==== wrapper stdout END ====
2025-04-16 21:43:49 (388): Guest Log: 2025-04-16 19:43:48,477 [wrapper] ==== wrapper stderr END ====
2025-04-16 21:43:49 (388): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 21:43:49 (388): Guest Log:     "exeErrorCode": 0,
2025-04-16 21:43:49 (388): Guest Log:     "exeErrorDiag": "",
2025-04-16 21:43:49 (388): Guest Log:     "pilotErrorCode": 0,
2025-04-16 21:43:49 (388): Guest Log:     "pilotErrorDiag": "",
2025-04-16 21:43:49 (388): Guest Log:  *** Listing of results directory ***
2025-04-16 21:43:49 (388): Guest Log: total 202504
2025-04-16 21:43:49 (388): Guest Log: -rw-r--r--. 1 atlas atlas    503527 Apr  3 07:42 pilot3.tar.gz
2025-04-16 21:43:49 (388): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 13:38 runpilot2-wrapper.sh
2025-04-16 21:43:49 (388): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 13:38 queuedata.json
2025-04-16 21:43:49 (388): Guest Log: -rwxr-xr-x. 1 atlas atlas      8322 Apr 16 13:08 init_data.xml
2025-04-16 21:43:49 (388): Guest Log: -rwxr-xr-x. 1 atlas atlas    517100 Apr 16 13:08 input.tar.gz
2025-04-16 21:43:49 (388): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 16 13:08 start_atlas.sh
2025-04-16 21:43:49 (388): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 13:08 EVNT.44075481._000687.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 21:43:49 (388): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 16 13:08 pandaJob.out
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas       461 Apr 16 13:08 setup.sh.local
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas    982907 Apr 16 13:08 agis_schedconf.cvmfs.json
2025-04-16 21:43:49 (388): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 13:08 pilot3
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 19:42 pilot_heartbeat.json
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas 198626780 Apr 16 19:42 HITS.44075483._017386.pool.root.1
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas      1025 Apr 16 19:43 memory_monitor_summary.json
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 19:43 agis_ddmendpoints.agis.ALL.json
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas    396782 Apr 16 19:43 log.44075483._017386.job.log.tgz.1
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas      7715 Apr 16 19:43 heartbeat.json
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 16 19:43 pilotlog.txt
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas   2083592 Apr 16 19:43 log.44075483._017386.job.log.1
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 19:43 output.list
2025-04-16 21:43:49 (388): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 19:43 runtime_log
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas   2498560 Apr 16 19:43 result.tar.gz
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas       663 Apr 16 19:43 ydnKDmICZO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmnJWLDmKYw9Mn.diag
2025-04-16 21:43:49 (388): Guest Log: -rw-r--r--. 1 atlas atlas     11326 Apr 16 19:43 runtime_log.err
2025-04-16 21:43:49 (388): Guest Log: Looking for outputfile HITS.44075483._017386.pool.root.1
2025-04-16 21:43:49 (388): Guest Log: HITS file was successfully produced
2025-04-16 21:43:49 (388): Guest Log: -rw-------. 1 atlas atlas 198626780 Apr 16 19:42 /home/atlas/RunAtlas/HITS.44075483._017386.pool.root.1
2025-04-16 21:43:50 (388): Guest Log: Successfully finished the ATLAS job!
2025-04-16 21:43:50 (388): Guest Log: Copying the results back to the shared directory!
2025-04-16 21:43:50 (388): Guest Log:  *** Contents of shared directory: ***
2025-04-16 21:43:50 (388): Guest Log: total 414520
2025-04-16 21:43:50 (388): Guest Log: -rwxrwxrwx. 1 root root 222787477 Apr 16 13:07 ATLAS.root_0
2025-04-16 21:43:50 (388): Guest Log: -rwxrwxrwx. 1 root root 198626780 Apr 16 19:43 HITS.pool.root.1
2025-04-16 21:43:50 (388): Guest Log: -rwxrwxrwx. 1 root root      8322 Apr 16 13:07 init_data.xml
2025-04-16 21:43:50 (388): Guest Log: -rwxrwxrwx. 1 root root    517100 Apr 15 05:51 input.tar.gz
2025-04-16 21:43:50 (388): Guest Log: -rwxrwxrwx. 1 root root   2498560 Apr 16 19:43 result.tar.gz
2025-04-16 21:43:50 (388): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 15 05:51 start_atlas.sh
2025-04-16 21:43:50 (388): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 21:43:50 (388): VM Completion File Detected.
2025-04-16 21:43:50 (388): Powering off VM.
2025-04-16 21:43:51 (388): Successfully stopped VM.
2025-04-16 21:43:51 (388): Deregistering VM. (boinc_6062c602a9500b11, slot#0)
2025-04-16 21:43:51 (388): Removing network bandwidth throttle group from VM.
2025-04-16 21:43:51 (388): Removing VM from VirtualBox.
21:43:56 (388): called boinc_finish(0)

</stderr_txt>
]]>

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