Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 11:30:40 (199736): Detected: vboxwrapper 26206
2025-04-16 11:30:40 (199736): Detected: BOINC client v7.24.1
2025-04-16 11:30:40 (199736): Detected: VirtualBox VboxManage Interface (Version: 7.1.2)
2025-04-16 11:30:40 (199736): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 11:30:40 (199736): Create VM. (boinc_1d1a4b4f516cd1fe, slot#6)
2025-04-16 11:30:40 (199736): Setting Memory Size for VM. (4700MB)
2025-04-16 11:30:40 (199736): Setting CPU Count for VM. (7)
2025-04-16 11:30:40 (199736): Setting Chipset Options for VM.
2025-04-16 11:30:40 (199736): Setting Graphics Controller Options for VM.
2025-04-16 11:30:40 (199736): Setting Boot Options for VM.
2025-04-16 11:30:41 (199736): Setting Network Configuration for NAT.
2025-04-16 11:30:41 (199736): Enabling VM Network Access.
2025-04-16 11:30:41 (199736): Disabling USB Support for VM.
2025-04-16 11:30:41 (199736): Disabling COM Port Support for VM.
2025-04-16 11:30:41 (199736): Disabling LPT Port Support for VM.
2025-04-16 11:30:41 (199736): Disabling Audio Support for VM.
2025-04-16 11:30:41 (199736): Disabling Clipboard Support for VM.
2025-04-16 11:30:41 (199736): Disabling Drag and Drop Support for VM.
2025-04-16 11:30:41 (199736): Adding storage controller(s) to VM.
2025-04-16 11:30:41 (199736): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 11:30:43 (199736): Adding VirtualBox Guest Additions to VM.
2025-04-16 11:30:43 (199736): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 11:30:43 (199736): forwarding host port 38693 to guest port 80
2025-04-16 11:30:43 (199736): Enabling remote desktop for VM.
2025-04-16 11:30:43 (199736): Required extension pack not installed, remote desktop not enabled.
2025-04-16 11:30:43 (199736): Enabling shared directory for VM.
2025-04-16 11:30:43 (199736): Starting VM using VBoxManage interface. (boinc_1d1a4b4f516cd1fe, slot#6)
2025-04-16 11:30:44 (199736): Successfully started VM. (PID = '200313')
2025-04-16 11:30:44 (199736): Reporting VM Process ID to BOINC.
2025-04-16 11:30:44 (199736): Guest Log: BIOS: VirtualBox 7.1.2
2025-04-16 11:30:44 (199736): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 11:30:44 (199736): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 11:30:44 (199736): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 11:30:44 (199736): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 11:30:44 (199736): Detected: Web Application Enabled (http://localhost:38693)
2025-04-16 11:30:44 (199736): Preference change detected
2025-04-16 11:30:44 (199736): Setting CPU throttle for VM. (100%)
2025-04-16 11:30:44 (199736): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 11:30:46 (199736): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 11:30:46 (199736): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 11:30:49 (199736): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 11:30:49 (199736): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 11:30:49 (199736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 11:30:59 (199736): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 11:30:59 (199736): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 11:31:07 (199736): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.000221 main     Log opened 2025-04-16T09:31:05.211989000Z
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.000375 main     OS Product: Linux
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.000410 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.000433 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.000456 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.000457 main     Process ID: 1377
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.000457 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 11:31:07 (199736): Guest Log: 00:00:00.002887 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 11:31:07 (199736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 11:31:07 (199736): Guest Log: [INFO] Mounting shared directory
2025-04-16 11:31:07 (199736): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 11:31:12 (199736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 11:31:12 (199736): Guest Log: [INFO] Detected branch: prod
2025-04-16 11:31:12 (199736): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 11:31:12 (199736): Guest Log: Copying input files
2025-04-16 11:31:13 (199736): Guest Log: Copied input files into RunAtlas.
2025-04-16 11:31:13 (199736): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 11:31:13 (199736): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 11:31:13 (199736): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 11:31:13 (199736): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 11:31:21 (199736): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 11:31:21 (199736): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 11:31:21 (199736): Guest Log: 2.6.3.0 1655 0 32172 144919 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 11:31:22 (199736): Guest Log: copied the webapp to /var/www
2025-04-16 11:31:22 (199736): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-16 11:31:22 (199736): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-16 11:31:22 (199736): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 11:31:22 (199736): Guest Log:  *** Starting ATLAS job. (PandaID=6600601274 taskID=44075164) ***
2025-04-16 13:09:45 (199736): Status Report: Elapsed Time: '6000.000000'
2025-04-16 13:09:45 (199736): Status Report: CPU Time: '30285.290000'
2025-04-16 13:31:02 (199736): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 17:56:25 (199736): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 17:56:32 (199736): Guest Log: 02:00:04.091470 timesync vgsvcTimeSyncWorker: Radical host time change: 15 932 420 000 000ns (HostNow=1 744 818 991 728 000 000 ns HostLast=1 744 803 059 308 000 000 ns)
2025-04-16 17:56:41 (199736): Guest Log: 02:00:14.094540 timesync vgsvcTimeSyncWorker: Radical guest time change: 15 932 507 621 000ns (GuestNow=1 744 819 001 770 808 000 ns GuestLast=1 744 803 069 263 187 000 ns fSetTimeLastLoop=true )
2025-04-16 19:02:35 (199736): Guest Log:  *** Job finished ***
2025-04-16 19:02:35 (199736): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:22,094 | INFO     | [data] queue_monitor thread has finished
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:26,582 | INFO     | job.realtimelogging is not enabled
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:27,613 | INFO     | [payload] run_realtimelog thread has finished
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:28,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139890987759424)>', '<ExcThread(monitor, started 139890557703936)>']
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:29,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:29,467 | INFO     | [monitor] control thread has ended
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:33,999 | INFO     | all workflow threads have been joined
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,000 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,000 | INFO     | traces error code: 0
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,104 [wrapper] ==== pilot stdout END ====
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,111 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,117 [wrapper] pilotpid: 5997
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,123 [wrapper] Pilot exit status: 0
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,212 [wrapper] pandaids: 6600601274
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,251 [wrapper] cleanup supervisor_pilot 10983 5998
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,258 [wrapper] Test setup, not cleaning
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,264 [wrapper] apfmon messages muted
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,270 [wrapper] ==== wrapper stdout END ====
2025-04-16 19:02:35 (199736): Guest Log: 2025-04-16 17:02:34,275 [wrapper] ==== wrapper stderr END ====
2025-04-16 19:02:35 (199736): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 19:02:35 (199736): Guest Log:     "exeErrorCode": 0,
2025-04-16 19:02:35 (199736): Guest Log:     "exeErrorDiag": "",
2025-04-16 19:02:35 (199736): Guest Log:     "pilotErrorCode": 0,
2025-04-16 19:02:35 (199736): Guest Log:     "pilotErrorDiag": "",
2025-04-16 19:02:35 (199736): Guest Log:  *** Listing of results directory ***
2025-04-16 19:02:35 (199736): Guest Log: total 191036
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 12 23:45 pilot3.tar.gz
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 12 23:49 queuedata.json
2025-04-16 19:02:35 (199736): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 12 23:50 runpilot2-wrapper.sh
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas    508882 Apr 16 09:31 input.tar.gz
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas      9338 Apr 16 09:31 init_data.xml
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 16 09:31 start_atlas.sh
2025-04-16 19:02:35 (199736): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 09:31 EVNT.44075162._001968.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr 16 09:31 pandaJob.out
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 09:31 setup.sh.local
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas    985396 Apr 16 09:32 agis_schedconf.cvmfs.json
2025-04-16 19:02:35 (199736): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 09:32 pilot3
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas 189448225 Apr 16 17:01 HITS.44075164._050485.pool.root.1
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas        98 Apr 16 17:01 pilot_heartbeat.json
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas      1032 Apr 16 17:01 memory_monitor_summary.json
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 17:01 agis_ddmendpoints.agis.ALL.json
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas    324549 Apr 16 17:01 log.44075164._050485.job.log.tgz.1
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas      7699 Apr 16 17:02 heartbeat.json
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas      4485 Apr 16 17:02 pilotlog.txt
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas    870804 Apr 16 17:02 log.44075164._050485.job.log.1
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 17:02 output.list
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 17:02 runtime_log
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas   1218560 Apr 16 17:02 result.tar.gz
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas       666 Apr 16 17:02 vtDODmnnzN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmMbSLDm8ZAKdm.diag
2025-04-16 19:02:35 (199736): Guest Log: -rw-r--r--. 1 atlas atlas     10953 Apr 16 17:02 runtime_log.err
2025-04-16 19:02:35 (199736): Guest Log: Looking for outputfile HITS.44075164._050485.pool.root.1
2025-04-16 19:02:35 (199736): Guest Log: HITS file was successfully produced
2025-04-16 19:02:35 (199736): Guest Log: -rw-------. 1 atlas atlas 189448225 Apr 16 17:01 /home/atlas/RunAtlas/HITS.44075164._050485.pool.root.1
2025-04-16 19:02:36 (199736): Guest Log: Successfully finished the ATLAS job!
2025-04-16 19:02:36 (199736): Guest Log: Copying the results back to the shared directory!
2025-04-16 19:02:36 (199736): Guest Log:  *** Contents of shared directory: ***
2025-04-16 19:02:36 (199736): Guest Log: total 214704
2025-04-16 19:02:36 (199736): Guest Log: -rw-r--r--. 1 root root 218091197 Apr 16 09:30 ATLAS.root_0
2025-04-16 19:02:36 (199736): Guest Log: -rw-r--r--. 1 root root      9338 Apr 16 09:30 init_data.xml
2025-04-16 19:02:36 (199736): Guest Log: -rw-r--r--. 1 root root    508882 Apr 16 09:30 input.tar.gz
2025-04-16 19:02:36 (199736): Guest Log: -rw-r--r--. 1 root root   1218560 Apr 16 17:02 result.tar.gz
2025-04-16 19:02:36 (199736): Guest Log: -rw-r--r--. 1 root root     17569 Apr 16 09:30 start_atlas.sh
2025-04-16 19:02:36 (199736): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 19:02:36 (199736): VM Completion File Detected.
2025-04-16 19:02:36 (199736): Powering off VM.
2025-04-16 19:02:37 (199736): Successfully stopped VM.
2025-04-16 19:02:37 (199736): Deregistering VM. (boinc_1d1a4b4f516cd1fe, slot#6)
2025-04-16 19:02:37 (199736): Removing network bandwidth throttle group from VM.
2025-04-16 19:02:37 (199736): Removing VM from VirtualBox.
19:02:42 (199736): called boinc_finish(0)

</stderr_txt>
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