Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:15:05 (18741): wrapper (7.7.26015): starting
15:15:05 (18741): wrapper: running run_atlas (--nthreads 3)
[2025-04-15 15:15:05] Arguments: --nthreads 3
[2025-04-15 15:15:05] Threads: 3
[2025-04-15 15:15:05] Checking for CVMFS
[2025-04-15 15:15:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 15:15:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 15:15:05] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 15:15:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 15:15:05] 2.9.2.0 2835571 4957 88344 144885 3 187 20638544 36864001 0 130560 0 3595300 99.992 1024653 5207 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-15 15:15:05] CVMFS is ok
[2025-04-15 15:15:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 15:15:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 15:15:05] Further information can be found at the LHC@home message board.
[2025-04-15 15:15:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 15:15:05] Checking for apptainer binary...
[2025-04-15 15:15:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 15:15:05] Running /usr/bin/apptainer --version
[2025-04-15 15:15:05] apptainer version 1.3.6-6.1
[2025-04-15 15:15:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 15:15:05] legendA269a
[2025-04-15 15:15:05] apptainer works
[2025-04-15 15:15:05] Set ATHENA_PROC_NUMBER=3
[2025-04-15 15:15:05] Set ATHENA_CORE_NUMBER=3
[2025-04-15 15:15:05] Starting ATLAS job with PandaID=6602133173
[2025-04-15 15:15:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-15 16:42:54]  *** The last 200 lines of the pilot log: ***
[2025-04-15 16:42:54]  is_altstaged=None
[2025-04-15 16:42:54]  is_tar=False
[2025-04-15 16:42:54]  lfn=log.44075483._018961.job.log.tgz.1
[2025-04-15 16:42:54]  mtime=0
[2025-04-15 16:42:54]  protocol_id=None
[2025-04-15 16:42:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-15 16:42:54]  replicas=None
[2025-04-15 16:42:54]  scope=mc23_13p6TeV
[2025-04-15 16:42:54]  status=None
[2025-04-15 16:42:54]  status_code=0
[2025-04-15 16:42:54]  storage_token=
[2025-04-15 16:42:54]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6602133173/log.44075483._018961.job.log.tgz.1
[2025-04-15 16:42:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/c5/log.44075483._018961.job.log.tgz.1
[2025-04-15 16:42:54]  workdir=None
[2025-04-15 16:42:54] ]
[2025-04-15 16:42:54] 2025-04-15 14:42:28,308 | INFO     | transferring file log.44075483._018961.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6602133173/log.44075483._018961.job.log.tgz.1 to /local/data/boinc/
[2025-04-15 16:42:54] 2025-04-15 14:42:28,308 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6602133173/log.44075483._018961.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0189
[2025-04-15 16:42:54] 2025-04-15 14:42:28,321 | INFO     | adding to output.list: log.44075483._018961.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/c5/log.44075483._018961.job.log.tg
[2025-04-15 16:42:54] 2025-04-15 14:42:28,322 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-15 16:42:54] 2025-04-15 14:42:28,322 | INFO     | summary of transferred files:
[2025-04-15 16:42:54] 2025-04-15 14:42:28,322 | INFO     |  -- lfn=log.44075483._018961.job.log.tgz.1, status_code=0, status=transferred
[2025-04-15 16:42:54] 2025-04-15 14:42:28,322 | INFO     | stage-out finished correctly
[2025-04-15 16:42:54] 2025-04-15 14:42:29,300 | INFO     | PID=22391 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-15 16:42:54] 2025-04-15 14:42:29,493 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-15 16:42:54] 2025-04-15 14:42:30,955 | WARNING  | process 28819 can no longer be monitored (due to stat problems) - aborting
[2025-04-15 16:42:54] 2025-04-15 14:42:30,955 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6602133173/memory_monitor_summary.json (trf name=prmon)
[2025-04-15 16:42:54] 2025-04-15 14:42:30,989 | INFO     | number of running child processes to parent process 28819: 1
[2025-04-15 16:42:54] 2025-04-15 14:42:30,989 | INFO     | maximum number of monitored processes: 6
[2025-04-15 16:42:54] 2025-04-15 14:42:31,607 | INFO     | job 6602133173 has state=finished
[2025-04-15 16:42:54] 2025-04-15 14:42:31,607 | INFO     | preparing for final server update for job 6602133173 in state='finished'
[2025-04-15 16:42:54] 2025-04-15 14:42:31,608 | INFO     | this job has now completed (state=finished)
[2025-04-15 16:42:54] 2025-04-15 14:42:31,608 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-15 16:42:54] 2025-04-15 14:42:31,608 | INFO     | log transfer has been attempted: DONE
[2025-04-15 16:42:54] 2025-04-15 14:42:31,608 | INFO     | job 6602133173 has finished - writing final server update
[2025-04-15 16:42:54] 2025-04-15 14:42:31,608 | INFO     | total number of processed events: 400 (read)
[2025-04-15 16:42:54] 2025-04-15 14:42:31,609 | INFO     | executing command: lscpu
[2025-04-15 16:42:54] 2025-04-15 14:42:31,622 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-15 16:42:54] 2025-04-15 14:42:33,492 | INFO     | monitor loop #403: job 0:6602133173 is in state 'finished'
[2025-04-15 16:42:54] 2025-04-15 14:42:33,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 16:42:54] 2025-04-15 14:42:35,843 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-15 16:42:54] 2025-04-15 14:42:35,843 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6602133173/memory_monitor_summary.json (trf name=prmon)
[2025-04-15 16:42:54] 2025-04-15 14:42:35,843 | INFO     | extracted standard info from prmon json
[2025-04-15 16:42:54] 2025-04-15 14:42:35,843 | INFO     | extracted standard memory fields from prmon json
[2025-04-15 16:42:54] 2025-04-15 14:42:35,843 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-15 16:42:54] 2025-04-15 14:42:35,844 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-15 16:42:54] 2025-04-15 14:42:35,844 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-15 16:42:54] 2025-04-15 14:42:35,844 | INFO     | fitting pss+swap vs Time
[2025-04-15 16:42:54] 2025-04-15 14:42:35,844 | INFO     | sum of square deviations: 152858680.0
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | sum of deviations: -1054593437.0
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | mean x: 1744725613.0
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | mean y: 2448973.430379747
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | -- intersect: 12039555278.65035
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | intersect: 12039555278.65035
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | chi2: 1.4220801493183837
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | -- intersect: 12039555278.65035
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | current memory leak: -6.90 B/s (using 79 data points, chi2=1.42)
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | ..............................
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . Timing measurements:
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . get job = 0 s
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . initial setup = 1 s
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . payload setup = 2 s
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . stage-in = 0 s
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . payload execution = 5218 s
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . stage-out = 0 s
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | . log creation = 0 s
[2025-04-15 16:42:54] 2025-04-15 14:42:35,845 | INFO     | ..............................
[2025-04-15 16:42:54] 2025-04-15 14:42:36,206 | INFO     | 
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | job summary report
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | --------------------------------------------------
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | PanDA job id: 6602133173
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | task id: 44075483
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | errors: (none)
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | pilot state: finished 
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | transexitcode: 0
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | exeerrorcode: 0
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | exeerrordiag: 
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | exitcode: 0
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | exitmsg: OK
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | cpuconsumptiontime: 13762 s
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | nevents: 400
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | neventsw: 0
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | pid: 28819
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | pgrp: 28819
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | corecount: 3
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | event service: False
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | sizes: {0: 2417367, 2: 2417573, 11: 2417601, 5224: 2444093, 5225: 2453095, 5226: 2453095, 5232: 2453393}
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | --------------------------------------------------
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | 
[2025-04-15 16:42:54] 2025-04-15 14:42:36,207 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-15 16:42:54] 2025-04-15 14:42:36,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | job 6602133173 has completed (purged errors)
[2025-04-15 16:42:54] 2025-04-15 14:42:36,221 | INFO     | overall cleanup function is called
[2025-04-15 16:42:54] 2025-04-15 14:42:37,228 | INFO     | --- collectZombieJob: --- 10, [28819]
[2025-04-15 16:42:54] 2025-04-15 14:42:37,228 | INFO     | zombie collector waiting for pid 28819
[2025-04-15 16:42:54] 2025-04-15 14:42:37,228 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-15 16:42:54] 2025-04-15 14:42:37,228 | INFO     | collected zombie processes
[2025-04-15 16:42:54] 2025-04-15 14:42:37,228 | INFO     | will attempt to kill all subprocesses of pid=28819
[2025-04-15 16:42:54] 2025-04-15 14:42:37,268 | INFO     | process IDs to be killed: [28819] (in reverse order)
[2025-04-15 16:42:54] 2025-04-15 14:42:37,291 | WARNING  | found no corresponding commands to process id(s)
[2025-04-15 16:42:54] 2025-04-15 14:42:37,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-15 16:42:54] 2025-04-15 14:42:37,292 | INFO     | did not find any defunct processes belonging to 28819
[2025-04-15 16:42:54] 2025-04-15 14:42:37,293 | INFO     | did not find any defunct processes belonging to 28819
[2025-04-15 16:42:54] 2025-04-15 14:42:37,293 | INFO     | ready for new job
[2025-04-15 16:42:54] 2025-04-15 14:42:37,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-15 16:42:54] 2025-04-15 14:42:37,294 | INFO     | **************************************
[2025-04-15 16:42:54] 2025-04-15 14:42:37,294 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-15 16:42:54] 2025-04-15 14:42:37,294 | INFO     | **************************************
[2025-04-15 16:42:54] 2025-04-15 14:42:37,294 | INFO     | 
[2025-04-15 16:42:54] 2025-04-15 14:42:37,294 | INFO     | architecture information:
[2025-04-15 16:42:54] 2025-04-15 14:42:37,294 | INFO     | executing command: cat /etc/os-release
[2025-04-15 16:42:54] 2025-04-15 14:42:37,302 | INFO     | cat /etc/os-release:
[2025-04-15 16:42:54] NAME="CentOS Linux"
[2025-04-15 16:42:54] VERSION="7 (Core)"
[2025-04-15 16:42:54] ID="centos"
[2025-04-15 16:42:54] ID_LIKE="rhel fedora"
[2025-04-15 16:42:54] VERSION_ID="7"
[2025-04-15 16:42:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-15 16:42:54] ANSI_COLOR="0;31"
[2025-04-15 16:42:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-15 16:42:54] HOME_URL="https://www.centos.org/"
[2025-04-15 16:42:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-15 16:42:54] 
[2025-04-15 16:42:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-15 16:42:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-15 16:42:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-15 16:42:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-15 16:42:54] 
[2025-04-15 16:42:54] 2025-04-15 14:42:37,302 | INFO     | **************************************
[2025-04-15 16:42:54] 2025-04-15 14:42:37,806 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | INFO     | sufficient remaining disk space (379819393024 B)
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | INFO     | current server update state: UPDATING_FINAL
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | INFO     | update_server=False
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | INFO     | aborting loop
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-15 16:42:54] 2025-04-15 14:42:37,817 | INFO     | found 0 job(s) in 20 queues
[2025-04-15 16:42:54] 2025-04-15 14:42:37,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-15 16:42:54] 2025-04-15 14:42:37,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-15 16:42:54] 2025-04-15 14:42:37,980 | INFO     | all payload control threads have been joined
[2025-04-15 16:42:54] 2025-04-15 14:42:38,654 | INFO     | all data control threads have been joined
[2025-04-15 16:42:54] 2025-04-15 14:42:38,823 | INFO     | [job] job monitor thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:38,823 | INFO     | [job] queue monitor thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:38,823 | INFO     | [job] retrieve thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:38,848 | INFO     | [job] create_data_payload thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:38,873 | INFO     | [payload] validate_pre thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:38,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-15 16:42:54] 2025-04-15 14:42:38,986 | INFO     | [payload] control thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:39,108 | INFO     | all job control threads have been joined
[2025-04-15 16:42:54] 2025-04-15 14:42:39,435 | INFO     | [payload] execute_payloads thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:39,643 | INFO     | [data] copytool_in thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:39,660 | INFO     | [data] control thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:39,725 | INFO     | [payload] failed_post thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:40,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-15 16:42:54] 2025-04-15 14:42:40,113 | INFO     | [job] control thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:40,230 | INFO     | [job] validate thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:40,264 | INFO     | [payload] validate_post thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:40,880 | INFO     | [data] copytool_out thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:44,040 | INFO     | [data] queue_monitor thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:48,022 | INFO     | job.realtimelogging is not enabled
[2025-04-15 16:42:54] 2025-04-15 14:42:49,028 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-15 16:42:54] 2025-04-15 14:42:49,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453715347264)>', '<ExcThread(monitor, started 140453080987392)>']
[2025-04-15 16:42:54] 2025-04-15 14:42:49,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-15 16:42:54] 2025-04-15 14:42:49,882 | INFO     | [monitor] control thread has ended
[2025-04-15 16:42:54] 2025-04-15 14:42:54,337 | INFO     | all workflow threads have been joined
[2025-04-15 16:42:54] 2025-04-15 14:42:54,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-15 16:42:54] 2025-04-15 14:42:54,337 | INFO     | traces error code: 0
[2025-04-15 16:42:54] 2025-04-15 14:42:54,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-15 16:42:54] 2025-04-15 14:42:54,386 [wrapper] ==== pilot stdout END ====
[2025-04-15 16:42:54] 2025-04-15 14:42:54,388 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-15 16:42:54] 2025-04-15 14:42:54,390 [wrapper] pilotpid: 22391
[2025-04-15 16:42:54] 2025-04-15 14:42:54,392 [wrapper] Pilot exit status: 0
[2025-04-15 16:42:54] 2025-04-15 14:42:54,399 [wrapper] pandaids: 6602133173
[2025-04-15 16:42:54] 2025-04-15 14:42:54,415 [wrapper] cleanup supervisor_pilot   40722 22392
[2025-04-15 16:42:54] 2025-04-15 14:42:54,417 [wrapper] Test setup, not cleaning
[2025-04-15 16:42:54] 2025-04-15 14:42:54,419 [wrapper] apfmon messages muted
[2025-04-15 16:42:54] 2025-04-15 14:42:54,422 [wrapper] ==== wrapper stdout END ====
[2025-04-15 16:42:54] 2025-04-15 14:42:54,424 [wrapper] ==== wrapper stderr END ====
[2025-04-15 16:42:54]  *** Error codes and diagnostics ***
[2025-04-15 16:42:54]     "exeErrorCode": 0,
[2025-04-15 16:42:54]     "exeErrorDiag": "",
[2025-04-15 16:42:54]     "pilotErrorCode": 0,
[2025-04-15 16:42:54]     "pilotErrorDiag": "",
[2025-04-15 16:42:54]  *** Listing of results directory ***
[2025-04-15 16:42:54] total 415064
[2025-04-15 16:42:54] -rwx------ 1 boinc boinc     37140 Apr 14 19:09 runpilot2-wrapper.sh
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc      5111 Apr 14 19:09 queuedata.json
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc    495897 Apr 14 19:09 pilot3.tar.gz
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc       100 Apr 15 15:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-15 16:42:54] -rwxr-xr-x 1 boinc boinc      7986 Apr 15 15:15 run_atlas
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc       105 Apr 15 15:15 job.xml
[2025-04-15 16:42:54] -rw-r--r-- 2 boinc boinc 227033109 Apr 15 15:15 EVNT.44075481._000750.pool.root.1
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc      6933 Apr 15 15:15 init_data.xml
[2025-04-15 16:42:54] drwxrwx--x 2 boinc boinc      4096 Apr 15 15:15 shared
[2025-04-15 16:42:54] -rw-r--r-- 2 boinc boinc    508892 Apr 15 15:15 input.tar.gz
[2025-04-15 16:42:54] -rw-r--r-- 2 boinc boinc     17569 Apr 15 15:15 start_atlas.sh
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc         0 Apr 15 15:15 boinc_lockfile
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc      2578 Apr 15 15:15 pandaJob.out
[2025-04-15 16:42:54] -rw------- 1 boinc boinc       424 Apr 15 15:15 setup.sh.local
[2025-04-15 16:42:54] -rw------- 1 boinc boinc    983993 Apr 15 15:15 agis_schedconf.cvmfs.json
[2025-04-15 16:42:54] -rw------- 1 boinc boinc   1603529 Apr 15 15:15 agis_ddmendpoints.agis.ALL.json
[2025-04-15 16:42:54] drwx------ 4 boinc boinc      4096 Apr 15 15:15 pilot3
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc       530 Apr 15 16:42 boinc_task_state.xml
[2025-04-15 16:42:54] -rw------- 1 boinc boinc 192640478 Apr 15 16:42 HITS.44075483._018961.pool.root.1
[2025-04-15 16:42:54] -rw------- 1 boinc boinc      1029 Apr 15 16:42 memory_monitor_summary.json
[2025-04-15 16:42:54] -rw------- 1 boinc boinc    247575 Apr 15 16:42 log.44075483._018961.job.log.tgz.1
[2025-04-15 16:42:54] -rw------- 1 boinc boinc        95 Apr 15 16:42 pilot_heartbeat.json
[2025-04-15 16:42:54] -rw------- 1 boinc boinc      7657 Apr 15 16:42 heartbeat.json
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc      8192 Apr 15 16:42 boinc_mmap_file
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc        27 Apr 15 16:42 wrapper_checkpoint.txt
[2025-04-15 16:42:54] -rw------- 1 boinc boinc      4552 Apr 15 16:42 pilotlog.txt
[2025-04-15 16:42:54] -rw------- 1 boinc boinc    505240 Apr 15 16:42 log.44075483._018961.job.log.1
[2025-04-15 16:42:54] -rw------- 1 boinc boinc       357 Apr 15 16:42 output.list
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc       620 Apr 15 16:42 runtime_log
[2025-04-15 16:42:54] -rw------- 1 boinc boinc    768000 Apr 15 16:42 result.tar.gz
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc     11124 Apr 15 16:42 runtime_log.err
[2025-04-15 16:42:54] -rw------- 1 boinc boinc       663 Apr 15 16:42 7M0KDm7TcO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmeX0KDmDZWi4n.diag
[2025-04-15 16:42:54] -rw-r--r-- 1 boinc boinc     21473 Apr 15 16:42 stderr.txt
[2025-04-15 16:42:54] HITS file was successfully produced:
[2025-04-15 16:42:54] -rw------- 1 boinc boinc 192640478 Apr 15 16:42 shared/HITS.pool.root.1
[2025-04-15 16:42:54]  *** Contents of shared directory: ***
[2025-04-15 16:42:54] total 411124
[2025-04-15 16:42:54] -rw-r--r-- 2 boinc boinc 227033109 Apr 15 15:15 ATLAS.root_0
[2025-04-15 16:42:54] -rw-r--r-- 2 boinc boinc    508892 Apr 15 15:15 input.tar.gz
[2025-04-15 16:42:54] -rw-r--r-- 2 boinc boinc     17569 Apr 15 15:15 start_atlas.sh
[2025-04-15 16:42:54] -rw------- 1 boinc boinc 192640478 Apr 15 16:42 HITS.pool.root.1
[2025-04-15 16:42:54] -rw------- 1 boinc boinc    768000 Apr 15 16:42 result.tar.gz
16:42:55 (18741): run_atlas exited; CPU time 13780.446279
16:42:55 (18741): called boinc_finish(0)

</stderr_txt>
]]>

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