Stderr output

<core_client_version>8.2.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 05:55:11 (495818): Detected: vboxwrapper 26206
2025-04-15 05:55:11 (495818): Detected: BOINC client v8.2.0
2025-04-15 05:55:11 (495818): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-04-15 05:55:12 (495818): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 05:55:13 (495818): Create VM. (boinc_de4abd6f16e8586a, slot#57)
2025-04-15 05:55:13 (495818): Setting Memory Size for VM. (4096MB)
2025-04-15 05:55:14 (495818): Setting CPU Count for VM. (1)
2025-04-15 05:55:14 (495818): Setting Chipset Options for VM.
2025-04-15 05:55:14 (495818): Setting Graphics Controller Options for VM.
2025-04-15 05:55:14 (495818): Setting Boot Options for VM.
2025-04-15 05:55:15 (495818): Setting Network Configuration for NAT.
2025-04-15 05:55:15 (495818): Enabling VM Network Access.
2025-04-15 05:55:15 (495818): Disabling USB Support for VM.
2025-04-15 05:55:16 (495818): Disabling COM Port Support for VM.
2025-04-15 05:55:16 (495818): Disabling LPT Port Support for VM.
2025-04-15 05:55:16 (495818): Disabling Audio Support for VM.
2025-04-15 05:55:17 (495818): Disabling Clipboard Support for VM.
2025-04-15 05:55:17 (495818): Disabling Drag and Drop Support for VM.
2025-04-15 05:55:17 (495818): Adding storage controller(s) to VM.
2025-04-15 05:55:18 (495818): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 05:55:18 (495818): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 05:55:19 (495818): forwarding host port 44719 to guest port 80
2025-04-15 05:55:19 (495818): Enabling remote desktop for VM.
2025-04-15 05:55:20 (495818): Enabling shared directory for VM.
2025-04-15 05:55:21 (495818): Starting VM using VBoxManage interface. (boinc_de4abd6f16e8586a, slot#57)
2025-04-15 05:55:22 (495818): Successfully started VM. (PID = '496538')
2025-04-15 05:55:22 (495818): Reporting VM Process ID to BOINC.
2025-04-15 05:55:22 (495818): Guest Log: BIOS: VirtualBox 7.0.20
2025-04-15 05:55:22 (495818): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 05:55:22 (495818): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 05:55:22 (495818): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 05:55:22 (495818): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 05:55:22 (495818): Detected: Web Application Enabled (http://localhost:44719)
2025-04-15 05:55:22 (495818): Detected: Remote Desktop Enabled (localhost:48643)
2025-04-15 05:55:22 (495818): Preference change detected
2025-04-15 05:55:22 (495818): Setting CPU throttle for VM. (100%)
2025-04-15 05:55:23 (495818): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 05:55:24 (495818): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 05:55:24 (495818): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 05:55:27 (495818): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 05:55:27 (495818): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 05:55:27 (495818): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 05:55:34 (495818): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 05:55:34 (495818): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 05:55:54 (495818): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.000283 main     Log opened 2025-04-15T03:55:52.100767000Z
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.000468 main     OS Product: Linux
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.000513 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.000547 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.000580 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.000581 main     Process ID: 1241
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.000582 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 05:55:54 (495818): Guest Log: 00:00:00.002690 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 05:55:54 (495818): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 05:55:54 (495818): Guest Log: [INFO] Mounting shared directory
2025-04-15 05:55:54 (495818): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 05:55:59 (495818): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 05:55:59 (495818): Guest Log: [INFO] Detected branch: prod
2025-04-15 05:55:59 (495818): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 05:55:59 (495818): Guest Log: Copying input files
2025-04-15 05:56:01 (495818): Guest Log: Copied input files into RunAtlas.
2025-04-15 05:56:02 (495818): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-15 05:56:09 (495818): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 05:56:10 (495818): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 05:56:10 (495818): Guest Log: 2.6.3.0 1510 0 29524 144874 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-15 05:56:11 (495818): Guest Log: copied the webapp to /var/www
2025-04-15 05:56:11 (495818): Guest Log: core_number=1
2025-04-15 05:56:11 (495818): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 05:56:12 (495818): Guest Log:  *** Starting ATLAS job. (PandaID=6602126870 taskID=44075483) ***
2025-04-15 07:34:23 (495818): Status Report: Elapsed Time: '6000.000000'
2025-04-15 07:34:23 (495818): Status Report: CPU Time: '5775.240000'
2025-04-15 09:13:24 (495818): Status Report: Elapsed Time: '12000.000000'
2025-04-15 09:13:24 (495818): Status Report: CPU Time: '11724.310000'
2025-04-15 10:52:26 (495818): Status Report: Elapsed Time: '18000.000000'
2025-04-15 10:52:26 (495818): Status Report: CPU Time: '17674.100000'
2025-04-15 12:31:27 (495818): Status Report: Elapsed Time: '24000.000000'
2025-04-15 12:31:27 (495818): Status Report: CPU Time: '23624.480000'
2025-04-15 14:10:27 (495818): Status Report: Elapsed Time: '30000.000000'
2025-04-15 14:10:27 (495818): Status Report: CPU Time: '29573.240000'
2025-04-15 15:49:28 (495818): Status Report: Elapsed Time: '36000.000000'
2025-04-15 15:49:28 (495818): Status Report: CPU Time: '35522.270000'
2025-04-15 17:28:29 (495818): Status Report: Elapsed Time: '42000.000000'
2025-04-15 17:28:29 (495818): Status Report: CPU Time: '41471.260000'
2025-04-15 19:07:30 (495818): Status Report: Elapsed Time: '48000.000000'
2025-04-15 19:07:30 (495818): Status Report: CPU Time: '47422.530000'
2025-04-15 20:46:31 (495818): Status Report: Elapsed Time: '54000.000000'
2025-04-15 20:46:31 (495818): Status Report: CPU Time: '53370.460000'
2025-04-15 22:25:32 (495818): Status Report: Elapsed Time: '60000.000000'
2025-04-15 22:25:32 (495818): Status Report: CPU Time: '59320.850000'
2025-04-16 00:04:33 (495818): Status Report: Elapsed Time: '66000.000000'
2025-04-16 00:04:33 (495818): Status Report: CPU Time: '65272.410000'
2025-04-16 01:43:34 (495818): Status Report: Elapsed Time: '72000.000000'
2025-04-16 01:43:34 (495818): Status Report: CPU Time: '71220.930000'
2025-04-16 03:22:35 (495818): Status Report: Elapsed Time: '78000.000000'
2025-04-16 03:22:35 (495818): Status Report: CPU Time: '77168.980000'
2025-04-16 05:01:36 (495818): Status Report: Elapsed Time: '84000.000000'
2025-04-16 05:01:36 (495818): Status Report: CPU Time: '83118.070000'
2025-04-16 05:16:52 (495818): Guest Log:  *** Job finished ***
2025-04-16 05:16:52 (495818): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:43,710 | INFO     | [payload] run_realtimelog thread has finished
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:43,828 | INFO     | [payload] control thread has finished
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:45,380 | INFO     | [data] queue_monitor thread has finished
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:46,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449813854016)>', '<ExcThread(monitor, started 140449364821760)>']
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:47,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:47,030 | INFO     | [monitor] control thread has ended
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,450 | INFO     | all workflow threads have been joined
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,451 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,451 | INFO     | traces error code: 0
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,625 [wrapper] ==== pilot stdout END ====
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,632 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,638 [wrapper] pilotpid: 5782
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,645 [wrapper] Pilot exit status: 0
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,682 [wrapper] pandaids: 6602126870
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,723 [wrapper] cleanup supervisor_pilot 26592 5783
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,730 [wrapper] Test setup, not cleaning
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,737 [wrapper] apfmon messages muted
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,745 [wrapper] ==== wrapper stdout END ====
2025-04-16 05:16:52 (495818): Guest Log: 2025-04-16 03:16:51,752 [wrapper] ==== wrapper stderr END ====
2025-04-16 05:16:52 (495818): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 05:16:52 (495818): Guest Log:     "exeErrorCode": 0,
2025-04-16 05:16:52 (495818): Guest Log:     "exeErrorDiag": "",
2025-04-16 05:16:52 (495818): Guest Log:     "pilotErrorCode": 0,
2025-04-16 05:16:52 (495818): Guest Log:     "pilotErrorDiag": "",
2025-04-16 05:16:52 (495818): Guest Log:  *** Listing of results directory ***
2025-04-16 05:16:52 (495818): Guest Log: total 215028
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 11:41 pilot3.tar.gz
2025-04-16 05:16:52 (495818): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 12:26 runpilot2-wrapper.sh
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 12:26 queuedata.json
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 15 03:55 start_atlas.sh
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas      9654 Apr 15 03:55 init_data.xml
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas    508893 Apr 15 03:55 input.tar.gz
2025-04-16 05:16:52 (495818): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 15 03:55 EVNT.44075481._000660.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 15 03:56 pandaJob.out
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas       460 Apr 15 03:56 setup.sh.local
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas    983977 Apr 15 03:56 agis_schedconf.cvmfs.json
2025-04-16 05:16:52 (495818): Guest Log: drwx------. 4 atlas atlas      4096 Apr 15 03:56 pilot3
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas 200451234 Apr 16 03:15 HITS.44075483._016694.pool.root.1
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 03:15 pilot_heartbeat.json
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas      1027 Apr 16 03:16 memory_monitor_summary.json
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 03:16 agis_ddmendpoints.agis.ALL.json
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas    868789 Apr 16 03:16 log.44075483._016694.job.log.tgz.1
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas      7728 Apr 16 03:16 heartbeat.json
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas      4599 Apr 16 03:16 pilotlog.txt
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas   7109734 Apr 16 03:16 log.44075483._016694.job.log.1
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 03:16 output.list
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 03:16 runtime_log
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas   7997440 Apr 16 03:16 result.tar.gz
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas       657 Apr 16 03:16 zzQNDmg4XO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmzK0KDmUWatln.diag
2025-04-16 05:16:52 (495818): Guest Log: -rw-r--r--. 1 atlas atlas     11181 Apr 16 03:16 runtime_log.err
2025-04-16 05:16:52 (495818): Guest Log: Looking for outputfile HITS.44075483._016694.pool.root.1
2025-04-16 05:16:52 (495818): Guest Log: HITS file was successfully produced
2025-04-16 05:16:52 (495818): Guest Log: -rw-------. 1 atlas atlas 200451234 Apr 16 03:15 /home/atlas/RunAtlas/HITS.44075483._016694.pool.root.1
2025-04-16 05:16:52 (495818): Guest Log: Successfully finished the ATLAS job!
2025-04-16 05:16:52 (495818): Guest Log: Copying the results back to the shared directory!
2025-04-16 05:16:53 (495818): Guest Log:  *** Contents of shared directory: ***
2025-04-16 05:16:53 (495818): Guest Log: total 227064
2025-04-16 05:16:53 (495818): Guest Log: -rw-r--r--. 1 root root 223964727 Apr 15 03:55 ATLAS.root_0
2025-04-16 05:16:53 (495818): Guest Log: -rw-r--r--. 1 root root      9654 Apr 15 03:55 init_data.xml
2025-04-16 05:16:53 (495818): Guest Log: -rw-r--r--. 1 root root    508893 Apr 15 03:55 input.tar.gz
2025-04-16 05:16:53 (495818): Guest Log: -rw-r--r--. 1 root root   7997440 Apr 16 03:16 result.tar.gz
2025-04-16 05:16:53 (495818): Guest Log: -rw-r--r--. 1 root root     17569 Apr 15 03:55 start_atlas.sh
2025-04-16 05:16:53 (495818): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 05:16:53 (495818): VM Completion File Detected.
2025-04-16 05:16:53 (495818): Powering off VM.
2025-04-16 05:16:54 (495818): Successfully stopped VM.
2025-04-16 05:16:54 (495818): Deregistering VM. (boinc_de4abd6f16e8586a, slot#57)
2025-04-16 05:16:55 (495818): Removing network bandwidth throttle group from VM.
2025-04-16 05:16:55 (495818): Removing VM from VirtualBox.
05:17:00 (495818): called boinc_finish(0)

</stderr_txt>
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