Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:55:34 (3680672): wrapper (7.7.26015): starting
11:55:34 (3680672): wrapper: running run_atlas (--nthreads 12)
[2025-04-15 11:55:34] Arguments: --nthreads 12
[2025-04-15 11:55:34] Threads: 12
[2025-04-15 11:55:34] Checking for CVMFS
[2025-04-15 11:55:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-15 11:55:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-15 11:55:36] Running cvmfs_config stat atlas.cern.ch
[2025-04-15 11:55:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-15 11:55:37] 2.12.7.0 2655462 6046 203492 144882 1 163 45218686 46080000 45358 130560 0 60231494 99.877 22803274 16109 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-04-15 11:55:37] CVMFS is ok
[2025-04-15 11:55:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-15 11:55:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-15 11:55:37] Further information can be found at the LHC@home message board.
[2025-04-15 11:55:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-15 11:55:37] Checking for apptainer binary...
[2025-04-15 11:55:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-15 11:55:37] Running /usr/bin/apptainer --version
[2025-04-15 11:55:37] apptainer version 1.3.6-1.el9
[2025-04-15 11:55:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-15 11:55:38] mff2101.farm.particle.cz
[2025-04-15 11:55:38] apptainer works
[2025-04-15 11:55:38] Set ATHENA_PROC_NUMBER=12
[2025-04-15 11:55:38] Set ATHENA_CORE_NUMBER=12
[2025-04-15 11:55:39] Starting ATLAS job with PandaID=6602131796
[2025-04-15 11:55:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-15 14:09:02]  *** The last 200 lines of the pilot log: ***
[2025-04-15 14:09:02] 2025-04-15 12:05:19,688 | INFO     | sum of deviations: 78868427218.92685
[2025-04-15 14:09:02] 2025-04-15 12:05:19,688 | INFO     | mean x: 1744714936.1463416
[2025-04-15 14:09:02] 2025-04-15 12:05:19,688 | INFO     | mean y: 2514109.837398374
[2025-04-15 14:09:02] 2025-04-15 12:05:19,688 | INFO     | -- intersect: -238456904528.2098
[2025-04-15 14:09:02] 2025-04-15 12:05:19,688 | INFO     | intersect: -238456904528.2098
[2025-04-15 14:09:02] 2025-04-15 12:05:19,688 | INFO     | chi2: 7.4479949965420555
[2025-04-15 14:09:02] 2025-04-15 12:05:19,689 | INFO     | sum of square deviations: 509509682.75423807
[2025-04-15 14:09:02] 2025-04-15 12:05:19,689 | INFO     | sum of deviations: 84712309602.04237
[2025-04-15 14:09:02] 2025-04-15 12:05:19,689 | INFO     | mean x: 1744714783.6525424
[2025-04-15 14:09:02] 2025-04-15 12:05:19,689 | INFO     | mean y: 2526635.025423729
[2025-04-15 14:09:02] 2025-04-15 12:05:19,689 | INFO     | -- intersect: -290077964320.6789
[2025-04-15 14:09:02] 2025-04-15 12:05:19,689 | INFO     | intersect: -290077964320.6789
[2025-04-15 14:09:02] 2025-04-15 12:05:19,690 | INFO     | chi2: 6.594114869791086
[2025-04-15 14:09:02] 2025-04-15 12:05:19,690 | INFO     | current chi2=6.594114869791086 (change=11.46456364628881 %)
[2025-04-15 14:09:02] 2025-04-15 12:05:19,690 | INFO     | right removable region: 117
[2025-04-15 14:09:02] 2025-04-15 12:05:19,690 | INFO     | sum of square deviations: 509498702.75423807
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | sum of deviations: 40718833185.66949
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | mean x: 1744715088.6525424
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | mean y: 2599968.6016949154
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | -- intersect: -139433991856.50378
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | intersect: -139433991856.50378
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | chi2: 3.7316654640190987
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | current chi2=3.7316654640190987 (change=49.8970465776141 %)
[2025-04-15 14:09:02] 2025-04-15 12:05:19,691 | INFO     | sum of square deviations: 447436235.13274336
[2025-04-15 14:09:02] 2025-04-15 12:05:19,692 | INFO     | sum of deviations: 13064934381.44247
[2025-04-15 14:09:02] 2025-04-15 12:05:19,692 | INFO     | mean x: 1744715241.159292
[2025-04-15 14:09:02] 2025-04-15 12:05:19,692 | INFO     | mean y: 2667908.530973451
[2025-04-15 14:09:02] 2025-04-15 12:05:19,692 | INFO     | -- intersect: -50942222894.258224
[2025-04-15 14:09:02] 2025-04-15 12:05:19,692 | INFO     | intersect: -50942222894.258224
[2025-04-15 14:09:02] 2025-04-15 12:05:19,693 | INFO     | chi2: 1.9438765526463588
[2025-04-15 14:09:02] 2025-04-15 12:05:19,693 | INFO     | current chi2=1.9438765526463588 (change=47.908606186987775 %)
[2025-04-15 14:09:02] 2025-04-15 12:05:19,693 | INFO     | sum of square deviations: 390629679.9999988
[2025-04-15 14:09:02] 2025-04-15 12:05:19,694 | INFO     | sum of deviations: -6576132999.666666
[2025-04-15 14:09:02] 2025-04-15 12:05:19,694 | INFO     | mean x: 1744715393.6666667
[2025-04-15 14:09:02] 2025-04-15 12:05:19,694 | INFO     | mean y: 2720240.314814815
[2025-04-15 14:09:02] 2025-04-15 12:05:19,694 | INFO     | -- intersect: 29374478359.968758
[2025-04-15 14:09:02] 2025-04-15 12:05:19,694 | INFO     | intersect: 29374478359.968758
[2025-04-15 14:09:02] 2025-04-15 12:05:19,694 | INFO     | chi2: 0.9238489977484178
[2025-04-15 14:09:02] 2025-04-15 12:05:19,694 | INFO     | current chi2=0.9238489977484178 (change=52.473885417738785 %)
[2025-04-15 14:09:02] 2025-04-15 12:05:19,695 | INFO     | sum of square deviations: 338846474.85436916
[2025-04-15 14:09:02] 2025-04-15 12:05:19,695 | INFO     | sum of deviations: -10275603373.145632
[2025-04-15 14:09:02] 2025-04-15 12:05:19,695 | INFO     | mean x: 1744715546.1747572
[2025-04-15 14:09:02] 2025-04-15 12:05:19,695 | INFO     | mean y: 2730906.174757282
[2025-04-15 14:09:02] 2025-04-15 12:05:19,695 | INFO     | -- intersect: 52911662478.0854
[2025-04-15 14:09:02] 2025-04-15 12:05:19,696 | INFO     | intersect: 52911662478.0854
[2025-04-15 14:09:02] 2025-04-15 12:05:19,696 | INFO     | chi2: 0.8526375845418593
[2025-04-15 14:09:02] 2025-04-15 12:05:19,696 | INFO     | current chi2=0.8526375845418593 (change=7.708122580650426 %)
[2025-04-15 14:09:02] 2025-04-15 12:05:19,696 | INFO     | left removable region: 40
[2025-04-15 14:09:02] 2025-04-15 12:05:19,696 | INFO     | sum of square deviations: 141572839.24675307
[2025-04-15 14:09:02] 2025-04-15 12:05:19,697 | INFO     | sum of deviations: -1674703162.2857141
[2025-04-15 14:09:02] 2025-04-15 12:05:19,697 | INFO     | mean x: 1744715973.2207792
[2025-04-15 14:09:02] 2025-04-15 12:05:19,697 | INFO     | mean y: 2756426.4285714286
[2025-04-15 14:09:02] 2025-04-15 12:05:19,697 | INFO     | -- intersect: 20641470555.41888
[2025-04-15 14:09:02] 2025-04-15 12:05:19,697 | INFO     | intersect: 20641470555.41888
[2025-04-15 14:09:02] 2025-04-15 12:05:19,697 | INFO     | chi2: 0.00239325029278625
[2025-04-15 14:09:02] 2025-04-15 12:05:19,697 | INFO     | -- intersect: 20641470555.41888
[2025-04-15 14:09:02] 2025-04-15 12:05:19,698 | INFO     | current memory leak: -11.83 B/s (using 77 data points, chi2=0.00)
[2025-04-15 14:09:02] 2025-04-15 12:05:19,698 | INFO     | ..............................
[2025-04-15 14:09:02] 2025-04-15 12:05:19,698 | INFO     | . Timing measurements:
[2025-04-15 14:09:02] 2025-04-15 12:05:19,698 | INFO     | . get job = 0 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,698 | INFO     | . initial setup = 4 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,699 | INFO     | . payload setup = 57 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,699 | INFO     | . stage-in = 0 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,699 | INFO     | . payload execution = 7498 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,699 | INFO     | . stage-out = 1 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,699 | INFO     | . log creation = 0 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,699 | INFO     | ..............................
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | 
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | job summary report
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | --------------------------------------------------
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | PanDA job id: 6602131796
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | task id: 44075483
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | errors: (none)
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | pilot state: finished 
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | transexitcode: 0
[2025-04-15 14:09:02] 2025-04-15 12:05:19,862 | INFO     | exeerrorcode: 0
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | exeerrordiag: 
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | exitcode: 0
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | exitmsg: OK
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | cpuconsumptiontime: 39106 s
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | nevents: 400
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | neventsw: 0
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | pid: 3764349
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | pgrp: 3764349
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | corecount: 12
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | event service: False
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | sizes: {0: 2416529, 1: 2417386, 2: 2417386, 12: 2417414, 23: 2417442, 34: 2417470, 44: 2417860, 7559: 2445238, 7560: 2445237, 7561: 2454236, 7564: 2454292, 7608: 2
[2025-04-15 14:09:02] 2025-04-15 12:05:19,863 | INFO     | --------------------------------------------------
[2025-04-15 14:09:02] 2025-04-15 12:05:19,864 | INFO     | 
[2025-04-15 14:09:02] 2025-04-15 12:05:19,864 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-04-15 14:09:02] 2025-04-15 12:05:20,031 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,031 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,031 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,031 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,033 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,033 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-15 14:09:02] 2025-04-15 12:05:20,033 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,033 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-15 14:09:02] 2025-04-15 12:05:20,033 | INFO     | job 6602131796 has completed (purged errors)
[2025-04-15 14:09:02] 2025-04-15 12:05:20,033 | INFO     | overall cleanup function is called
[2025-04-15 14:09:02] 2025-04-15 12:05:21,047 | INFO     | --- collectZombieJob: --- 10, [3764349]
[2025-04-15 14:09:02] 2025-04-15 12:05:21,048 | INFO     | zombie collector waiting for pid 3764349
[2025-04-15 14:09:02] 2025-04-15 12:05:21,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-15 14:09:02] 2025-04-15 12:05:21,048 | INFO     | collected zombie processes
[2025-04-15 14:09:02] 2025-04-15 12:05:21,048 | INFO     | will attempt to kill all subprocesses of pid=3764349
[2025-04-15 14:09:02] 2025-04-15 12:05:21,908 | INFO     | process IDs to be killed: [3764349] (in reverse order)
[2025-04-15 14:09:02] 2025-04-15 12:05:22,311 | WARNING  | found no corresponding commands to process id(s)
[2025-04-15 14:09:02] 2025-04-15 12:05:22,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-15 14:09:02] 2025-04-15 12:05:22,350 | INFO     | did not find any defunct processes belonging to 3764349
[2025-04-15 14:09:02] 2025-04-15 12:05:22,385 | INFO     | did not find any defunct processes belonging to 3764349
[2025-04-15 14:09:02] 2025-04-15 12:05:22,385 | INFO     | ready for new job
[2025-04-15 14:09:02] 2025-04-15 12:05:22,385 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-15 14:09:02] 2025-04-15 12:05:22,387 | INFO     | **************************************
[2025-04-15 14:09:02] 2025-04-15 12:05:22,387 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-15 14:09:02] 2025-04-15 12:05:22,387 | INFO     | **************************************
[2025-04-15 14:09:02] 2025-04-15 12:05:22,387 | INFO     | 
[2025-04-15 14:09:02] 2025-04-15 12:05:22,393 | INFO     | architecture information:
[2025-04-15 14:09:02] 2025-04-15 12:05:22,404 | INFO     | executing command: cat /etc/os-release
[2025-04-15 14:09:02] 2025-04-15 12:05:22,506 | INFO     | cat /etc/os-release:
[2025-04-15 14:09:02] NAME="CentOS Linux"
[2025-04-15 14:09:02] VERSION="7 (Core)"
[2025-04-15 14:09:02] ID="centos"
[2025-04-15 14:09:02] ID_LIKE="rhel fedora"
[2025-04-15 14:09:02] VERSION_ID="7"
[2025-04-15 14:09:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-15 14:09:02] ANSI_COLOR="0;31"
[2025-04-15 14:09:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-15 14:09:02] HOME_URL="https://www.centos.org/"
[2025-04-15 14:09:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-15 14:09:02] 
[2025-04-15 14:09:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-15 14:09:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-15 14:09:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-15 14:09:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-15 14:09:02] 
[2025-04-15 14:09:02] 2025-04-15 12:05:22,507 | INFO     | **************************************
[2025-04-15 14:09:02] 2025-04-15 12:05:23,014 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-04-15 14:09:02] 2025-04-15 12:05:23,129 | INFO     | sufficient remaining disk space (1636027072512 B)
[2025-04-15 14:09:02] 2025-04-15 12:05:23,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-15 14:09:02] 2025-04-15 12:05:23,130 | INFO     | current server update state: UPDATING_FINAL
[2025-04-15 14:09:02] 2025-04-15 12:05:23,130 | INFO     | update_server=False
[2025-04-15 14:09:02] 2025-04-15 12:05:23,130 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-15 14:09:02] 2025-04-15 12:05:23,130 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-15 14:09:02] 2025-04-15 12:05:23,131 | INFO     | found 0 job(s) in 20 queues
[2025-04-15 14:09:02] 2025-04-15 12:05:23,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-15 14:09:02] 2025-04-15 12:05:23,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-15 14:09:02] 2025-04-15 12:05:23,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-15 14:09:02] 2025-04-15 12:05:23,365 | INFO     | aborting loop
[2025-04-15 14:09:02] 2025-04-15 12:05:23,708 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-15 14:09:02] 2025-04-15 12:05:24,135 | INFO     | all job control threads have been joined
[2025-04-15 14:09:02] 2025-04-15 12:05:24,137 | INFO     | [job] retrieve thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,238 | INFO     | all data control threads have been joined
[2025-04-15 14:09:02] 2025-04-15 12:05:24,371 | INFO     | [job] job monitor thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,443 | INFO     | [payload] validate_pre thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,443 | INFO     | all payload control threads have been joined
[2025-04-15 14:09:02] 2025-04-15 12:05:24,583 | INFO     | [payload] failed_post thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,711 | INFO     | [job] validate thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,730 | INFO     | [payload] execute_payloads thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,876 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-15 14:09:02] 2025-04-15 12:05:24,933 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,944 | INFO     | [data] copytool_in thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:24,950 | INFO     | [job] create_data_payload thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:25,142 | INFO     | [job] control thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:25,158 | INFO     | [payload] validate_post thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:25,244 | INFO     | [data] control thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:25,449 | INFO     | [payload] control thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:25,717 | INFO     | [data] copytool_out thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:25,883 | INFO     | [job] queue monitor thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:26,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-15 14:09:02] 2025-04-15 12:05:30,368 | INFO     | [data] queue_monitor thread has finished
[2025-04-15 14:09:02] 2025-04-15 12:05:30,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033203578688)>', '<ExcThread(monitor, started 140032400664320)>']
[2025-04-15 14:09:02] 2025-04-15 12:05:31,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-15 14:09:02] 2025-04-15 12:05:31,179 | INFO     | [monitor] control thread has ended
[2025-04-15 14:09:02] 2025-04-15 12:05:35,647 | INFO     | all workflow threads have been joined
[2025-04-15 14:09:02] 2025-04-15 12:05:35,648 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-15 14:09:02] 2025-04-15 12:05:35,648 | INFO     | traces error code: 0
[2025-04-15 14:09:02] 2025-04-15 12:05:35,648 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-15 14:09:02] 2025-04-15 12:05:35,885 [wrapper] ==== pilot stdout END ====
[2025-04-15 14:09:02] 2025-04-15 12:05:35,928 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-15 14:09:02] 2025-04-15 12:05:35,969 [wrapper] pilotpid: 3707035
[2025-04-15 14:09:02] 2025-04-15 12:05:36,017 [wrapper] Pilot exit status: 0
[2025-04-15 14:09:02] 2025-04-15 12:05:36,149 [wrapper] pandaids: 6602131796
[2025-04-15 14:09:02] 2025-04-15 12:05:36,569 [wrapper] cleanup supervisor_pilot  846148 3707036
[2025-04-15 14:09:02] 2025-04-15 12:05:36,609 [wrapper] Test setup, not cleaning
[2025-04-15 14:09:02] 2025-04-15 12:05:36,647 [wrapper] apfmon messages muted
[2025-04-15 14:09:02] 2025-04-15 12:05:36,682 [wrapper] ==== wrapper stdout END ====
[2025-04-15 14:09:02] 2025-04-15 12:05:36,722 [wrapper] ==== wrapper stderr END ====
[2025-04-15 14:09:02]  *** Error codes and diagnostics ***
[2025-04-15 14:09:02]     "exeErrorCode": 0,
[2025-04-15 14:09:02]     "exeErrorDiag": "",
[2025-04-15 14:09:02]     "pilotErrorCode": 0,
[2025-04-15 14:09:02]     "pilotErrorDiag": "",
[2025-04-15 14:09:02]  *** Listing of results directory ***
[2025-04-15 14:09:02] total 414576
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc    495897 Apr 14 17:38 pilot3.tar.gz
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc      5111 Apr 14 18:19 queuedata.json
[2025-04-15 14:09:02] -rwx------ 1 boinc boinc     37140 Apr 14 18:20 runpilot2-wrapper.sh
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc       100 Apr 15 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-15 14:09:02] -rwxr-xr-x 1 boinc boinc      7986 Apr 15 11:55 run_atlas
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc       105 Apr 15 11:55 job.xml
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc      6654 Apr 15 11:55 init_data.xml
[2025-04-15 14:09:02] -rw-r--r-- 2 boinc boinc 225468216 Apr 15 11:55 EVNT.44075481._000738.pool.root.1
[2025-04-15 14:09:02] -rw-r--r-- 2 boinc boinc    508891 Apr 15 11:55 input.tar.gz
[2025-04-15 14:09:02] -rw-r--r-- 2 boinc boinc     17569 Apr 15 11:55 start_atlas.sh
[2025-04-15 14:09:02] drwxrwx--x 2 boinc boinc      4096 Apr 15 11:55 shared
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc         0 Apr 15 11:55 boinc_lockfile
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc      2574 Apr 15 11:55 pandaJob.out
[2025-04-15 14:09:02] -rw------- 1 boinc boinc       424 Apr 15 11:55 setup.sh.local
[2025-04-15 14:09:02] -rw------- 1 boinc boinc    983993 Apr 15 11:57 agis_schedconf.cvmfs.json
[2025-04-15 14:09:02] -rw------- 1 boinc boinc   1603529 Apr 15 11:57 agis_ddmendpoints.agis.ALL.json
[2025-04-15 14:09:02] drwx------ 4 boinc boinc      4096 Apr 15 11:57 pilot3
[2025-04-15 14:09:02] -rw------- 1 boinc boinc 193123512 Apr 15 14:03 HITS.44075483._018638.pool.root.1
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc       529 Apr 15 14:03 boinc_task_state.xml
[2025-04-15 14:09:02] -rw------- 1 boinc boinc      1026 Apr 15 14:04 memory_monitor_summary.json
[2025-04-15 14:09:02] -rw------- 1 boinc boinc    375227 Apr 15 14:04 log.44075483._018638.job.log.tgz.1
[2025-04-15 14:09:02] -rw------- 1 boinc boinc      7691 Apr 15 14:05 heartbeat.json
[2025-04-15 14:09:02] -rw------- 1 boinc boinc        95 Apr 15 14:05 pilot_heartbeat.json
[2025-04-15 14:09:02] -rw------- 1 boinc boinc      4479 Apr 15 14:05 pilotlog.txt
[2025-04-15 14:09:02] -rw------- 1 boinc boinc    671453 Apr 15 14:05 log.44075483._018638.job.log.1
[2025-04-15 14:09:02] -rw------- 1 boinc boinc       357 Apr 15 14:05 output.list
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc       620 Apr 15 14:05 runtime_log
[2025-04-15 14:09:02] -rw------- 1 boinc boinc   1064960 Apr 15 14:05 result.tar.gz
[2025-04-15 14:09:02] -rw------- 1 boinc boinc       663 Apr 15 14:05 XToKDmnibO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmaYWLDmGp8ehm.diag
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc     11078 Apr 15 14:05 runtime_log.err
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc        26 Apr 15 14:08 wrapper_checkpoint.txt
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc      8192 Apr 15 14:09 boinc_mmap_file
[2025-04-15 14:09:02] -rw-r--r-- 1 boinc boinc     20912 Apr 15 14:09 stderr.txt
[2025-04-15 14:09:02] HITS file was successfully produced:
[2025-04-15 14:09:03] -rw------- 1 boinc boinc 193123512 Apr 15 14:03 shared/HITS.pool.root.1
[2025-04-15 14:09:03]  *** Contents of shared directory: ***
[2025-04-15 14:09:03] total 410352
[2025-04-15 14:09:03] -rw-r--r-- 2 boinc boinc 225468216 Apr 15 11:55 ATLAS.root_0
[2025-04-15 14:09:03] -rw-r--r-- 2 boinc boinc    508891 Apr 15 11:55 input.tar.gz
[2025-04-15 14:09:03] -rw-r--r-- 2 boinc boinc     17569 Apr 15 11:55 start_atlas.sh
[2025-04-15 14:09:03] -rw------- 1 boinc boinc 193123512 Apr 15 14:03 HITS.pool.root.1
[2025-04-15 14:09:03] -rw------- 1 boinc boinc   1064960 Apr 15 14:05 result.tar.gz
14:09:05 (3680672): run_atlas exited; CPU time 39607.499011
14:09:05 (3680672): called boinc_finish(0)

</stderr_txt>
]]>

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