Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 07:48:03 (21328): Detected: vboxwrapper 26206
2025-04-15 07:48:03 (21328): Detected: BOINC client v8.0.2
2025-04-15 07:48:03 (21328): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-15 07:48:03 (21328): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 07:48:04 (21328): Create VM. (boinc_0739badac7342546, slot#10)
2025-04-15 07:48:04 (21328): Setting Memory Size for VM. (4800MB)
2025-04-15 07:48:05 (21328): Setting CPU Count for VM. (8)
2025-04-15 07:48:05 (21328): Setting Chipset Options for VM.
2025-04-15 07:48:05 (21328): Setting Graphics Controller Options for VM.
2025-04-15 07:48:05 (21328): Setting Boot Options for VM.
2025-04-15 07:48:06 (21328): Setting Network Configuration for NAT.
2025-04-15 07:48:06 (21328): Enabling VM Network Access.
2025-04-15 07:48:06 (21328): Disabling USB Support for VM.
2025-04-15 07:48:07 (21328): Disabling COM Port Support for VM.
2025-04-15 07:48:07 (21328): Disabling LPT Port Support for VM.
2025-04-15 07:48:07 (21328): Disabling Audio Support for VM.
2025-04-15 07:48:07 (21328): Disabling Clipboard Support for VM.
2025-04-15 07:48:08 (21328): Disabling Drag and Drop Support for VM.
2025-04-15 07:48:08 (21328): Adding storage controller(s) to VM.
2025-04-15 07:48:08 (21328): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 07:48:09 (21328): Adding VirtualBox Guest Additions to VM.
2025-04-15 07:48:09 (21328): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 07:48:09 (21328): forwarding host port 65312 to guest port 80
2025-04-15 07:48:09 (21328): Enabling remote desktop for VM.
2025-04-15 07:48:10 (21328): Enabling shared directory for VM.
2025-04-15 07:48:11 (21328): Starting VM using VBoxManage interface. (boinc_0739badac7342546, slot#10)
2025-04-15 07:48:15 (21328): Successfully started VM. (PID = '20552')
2025-04-15 07:48:15 (21328): Reporting VM Process ID to BOINC.
2025-04-15 07:48:15 (21328): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-15 07:48:15 (21328): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 07:48:15 (21328): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 07:48:15 (21328): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 07:48:15 (21328): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 07:48:15 (21328): Detected: Web Application Enabled (http://localhost:65312)
2025-04-15 07:48:15 (21328): Detected: Remote Desktop Enabled (localhost:65313)
2025-04-15 07:48:15 (21328): Preference change detected
2025-04-15 07:48:15 (21328): Setting CPU throttle for VM. (90%)
2025-04-15 07:48:15 (21328): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 07:48:17 (21328): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 07:48:17 (21328): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 07:48:20 (21328): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 07:48:20 (21328): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 07:48:20 (21328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 07:48:28 (21328): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 07:48:28 (21328): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 07:48:32 (21328): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.000182 main     Log opened 2025-04-15T07:48:31.328410000Z
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.000302 main     OS Product: Linux
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.000330 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.000353 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.000389 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.000390 main     Process ID: 1366
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 07:48:32 (21328): Guest Log: 00:00:00.001066 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 07:48:33 (21328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 07:48:33 (21328): Guest Log: [INFO] Mounting shared directory
2025-04-15 07:48:33 (21328): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 07:48:35 (21328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 07:48:35 (21328): Guest Log: [INFO] Detected branch: prod
2025-04-15 07:48:36 (21328): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 07:48:36 (21328): Guest Log: Copying input files
2025-04-15 07:48:37 (21328): Guest Log: Copied input files into RunAtlas.
2025-04-15 07:48:37 (21328): Guest Log: Detected user-configured HTTP proxy at http://proxy.kippola.kiulu10clients.net:3128 - will set in /etc/cvmfs/default.local
2025-04-15 07:48:42 (21328): Guest Log: 00:00:10.003438 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 701 963 000ns (GuestNow=1 744 692 522 629 329 000 ns GuestLast=1 744 703 311 331 292 000 ns fSetTimeLastLoop=true )
2025-04-15 07:48:44 (21328): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 07:48:44 (21328): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 07:48:44 (21328): Guest Log: 2.6.3.0 1643 0 29592 144875 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2025-04-15 07:48:45 (21328): Guest Log: copied the webapp to /var/www
2025-04-15 07:48:45 (21328): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-15 07:48:45 (21328): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-15 07:48:45 (21328): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 07:48:45 (21328): Guest Log:  *** Starting ATLAS job. (PandaID=6600460921 taskID=44075164) ***
2025-04-15 08:02:26 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:02:46 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:15:38 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:15:58 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:19:58 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:20:18 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:21:58 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:22:18 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:37:10 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:37:30 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:45:31 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:45:51 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:48:31 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:48:51 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:57:02 (21328): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:57:22 (21328): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 08:58:15 (21328): Guest Log:  *** Job finished ***
2025-04-15 08:58:15 (21328): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:24,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:25,139 | INFO     | [payload] validate_post thread has finished
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:29,058 | INFO     | [data] queue_monitor thread has finished
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:29,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140505149708096)>', '<ExcThread(monitor, started 140504847066880)>']
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:29,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:29,684 | INFO     | [monitor] control thread has ended
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,297 | INFO     | all workflow threads have been joined
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,297 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,297 | INFO     | traces error code: 0
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,398 [wrapper] ==== pilot stdout END ====
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,404 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,409 [wrapper] pilotpid: 5988
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:34,414 [wrapper] Pilot exit status: 0
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:35,079 [wrapper] pandaids: 6600460921
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:35,110 [wrapper] cleanup supervisor_pilot 31035 5989
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:35,117 [wrapper] Test setup, not cleaning
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:35,122 [wrapper] apfmon messages muted
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:35,128 [wrapper] ==== wrapper stdout END ====
2025-04-15 08:58:15 (21328): Guest Log: 2025-04-15 05:55:35,132 [wrapper] ==== wrapper stderr END ====
2025-04-15 08:58:15 (21328): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 08:58:15 (21328): Guest Log:     "exeErrorCode": 0,
2025-04-15 08:58:15 (21328): Guest Log:     "exeErrorDiag": "",
2025-04-15 08:58:15 (21328): Guest Log:     "pilotErrorCode": 0,
2025-04-15 08:58:15 (21328): Guest Log:     "pilotErrorDiag": "",
2025-04-15 08:58:15 (21328): Guest Log:  *** Listing of results directory ***
2025-04-15 08:58:15 (21328): Guest Log: total 192948
2025-04-15 08:58:15 (21328): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 12 15:13 pilot3.tar.gz
2025-04-15 08:58:15 (21328): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 12 15:44 queuedata.json
2025-04-15 08:58:15 (21328): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 12 15:44 runpilot2-wrapper.sh
2025-04-15 08:58:15 (21328): Guest Log: -rwxr-xr-x. 1 atlas atlas      9263 Apr 15 04:48 init_data.xml
2025-04-15 08:58:15 (21328): Guest Log: -rwxr-xr-x. 1 atlas atlas    508883 Apr 15 04:48 input.tar.gz
2025-04-15 08:58:15 (21328): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 15 04:48 start_atlas.sh
2025-04-15 08:58:15 (21328): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 15 04:48 EVNT.44075162._001795.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 08:58:15 (21328): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Apr 15 04:48 pandaJob.out
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas       479 Apr 15 04:48 setup.sh.local
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas    983961 Apr 15 04:49 agis_schedconf.cvmfs.json
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 04:49 agis_ddmendpoints.agis.ALL.json
2025-04-15 08:58:15 (21328): Guest Log: drwx------. 4 atlas atlas      4096 Apr 15 04:49 pilot3
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas        95 Apr 15 05:54 pilot_heartbeat.json
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas 192468413 Apr 15 05:54 HITS.44075164._046183.pool.root.1
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas      1028 Apr 15 05:55 memory_monitor_summary.json
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas    299014 Apr 15 05:55 log.44075164._046183.job.log.tgz.1
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas      7715 Apr 15 05:55 heartbeat.json
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 15 05:55 pilotlog.txt
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas    367296 Apr 15 05:55 log.44075164._046183.job.log.1
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 05:55 output.list
2025-04-15 08:58:15 (21328): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 05:55 runtime_log
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas    686080 Apr 15 05:55 result.tar.gz
2025-04-15 08:58:15 (21328): Guest Log: -rw-r--r--. 1 atlas atlas     11409 Apr 15 05:55 runtime_log.err
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas       650 Apr 15 05:55 3s6LDm4CsN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmdnRLDmKgQX7m.diag
2025-04-15 08:58:15 (21328): Guest Log: Looking for outputfile HITS.44075164._046183.pool.root.1
2025-04-15 08:58:15 (21328): Guest Log: HITS file was successfully produced
2025-04-15 08:58:15 (21328): Guest Log: -rw-------. 1 atlas atlas 192468413 Apr 15 05:54 /home/atlas/RunAtlas/HITS.44075164._046183.pool.root.1
2025-04-15 08:58:16 (21328): Guest Log: Successfully finished the ATLAS job!
2025-04-15 08:58:16 (21328): Guest Log: Copying the results back to the shared directory!
2025-04-15 08:58:16 (21328): Guest Log:  *** Contents of shared directory: ***
2025-04-15 08:58:16 (21328): Guest Log: total 403280
2025-04-15 08:58:16 (21328): Guest Log: -rwxrwxrwx. 1 root root 219254545 Apr 15 04:48 ATLAS.root_0
2025-04-15 08:58:16 (21328): Guest Log: -rwxrwxrwx. 1 root root 192468413 Apr 15  2025 HITS.pool.root.1
2025-04-15 08:58:16 (21328): Guest Log: -rwxrwxrwx. 1 root root      9263 Apr 15 04:48 init_data.xml
2025-04-15 08:58:16 (21328): Guest Log: -rwxrwxrwx. 1 root root    508883 Apr 15 01:11 input.tar.gz
2025-04-15 08:58:16 (21328): Guest Log: -rwxrwxrwx. 1 root root    686080 Apr 15  2025 result.tar.gz
2025-04-15 08:58:16 (21328): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 15 01:11 start_atlas.sh
2025-04-15 08:58:16 (21328): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 08:58:16 (21328): VM Completion File Detected.
2025-04-15 08:58:16 (21328): Powering off VM.
2025-04-15 08:58:17 (21328): Successfully stopped VM.
2025-04-15 08:58:17 (21328): Deregistering VM. (boinc_0739badac7342546, slot#10)
2025-04-15 08:58:17 (21328): Removing network bandwidth throttle group from VM.
2025-04-15 08:58:17 (21328): Removing VM from VirtualBox.
08:58:22 (21328): called boinc_finish(0)

</stderr_txt>
]]>

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