Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 01:22:44 (16368): Detected: vboxwrapper 26206
2025-04-15 01:22:44 (16368): Detected: BOINC client v8.0.4
2025-04-15 01:22:45 (16368): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-15 01:22:45 (16368): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 01:22:46 (16368): Create VM. (boinc_8c3be063fa00be10, slot#3)
2025-04-15 01:22:46 (16368): Setting Memory Size for VM. (4600MB)
2025-04-15 01:22:46 (16368): Setting CPU Count for VM. (6)
2025-04-15 01:22:47 (16368): Setting Chipset Options for VM.
2025-04-15 01:22:47 (16368): Setting Graphics Controller Options for VM.
2025-04-15 01:22:47 (16368): Setting Boot Options for VM.
2025-04-15 01:22:47 (16368): Setting Network Configuration for NAT.
2025-04-15 01:22:48 (16368): Enabling VM Network Access.
2025-04-15 01:22:48 (16368): Disabling USB Support for VM.
2025-04-15 01:22:48 (16368): Disabling COM Port Support for VM.
2025-04-15 01:22:49 (16368): Disabling LPT Port Support for VM.
2025-04-15 01:22:49 (16368): Disabling Audio Support for VM.
2025-04-15 01:22:49 (16368): Disabling Clipboard Support for VM.
2025-04-15 01:22:49 (16368): Disabling Drag and Drop Support for VM.
2025-04-15 01:22:50 (16368): Adding storage controller(s) to VM.
2025-04-15 01:22:50 (16368): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 01:22:53 (16368): Adding VirtualBox Guest Additions to VM.
2025-04-15 01:22:53 (16368): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 01:22:53 (16368): forwarding host port 62253 to guest port 80
2025-04-15 01:22:54 (16368): Enabling remote desktop for VM.
2025-04-15 01:22:54 (16368): Required extension pack not installed, remote desktop not enabled.
2025-04-15 01:22:54 (16368): Enabling shared directory for VM.
2025-04-15 01:22:55 (16368): Starting VM using VBoxManage interface. (boinc_8c3be063fa00be10, slot#3)
2025-04-15 01:23:00 (16368): Successfully started VM. (PID = '13260')
2025-04-15 01:23:00 (16368): Reporting VM Process ID to BOINC.
2025-04-15 01:23:00 (16368): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-15 01:23:00 (16368): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 01:23:00 (16368): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 01:23:00 (16368): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 01:23:00 (16368): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 01:23:00 (16368): Detected: Web Application Enabled (http://localhost:62253)
2025-04-15 01:23:00 (16368): Preference change detected
2025-04-15 01:23:00 (16368): Setting CPU throttle for VM. (100%)
2025-04-15 01:23:00 (16368): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 01:23:02 (16368): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 01:23:02 (16368): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 01:23:04 (16368): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 01:23:04 (16368): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 01:23:04 (16368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 01:23:09 (16368): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 01:23:09 (16368): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 01:23:15 (16368): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.000118 main     Log opened 2025-04-15T01:23:12.709256000Z
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.000191 main     OS Product: Linux
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.000218 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.000239 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.000261 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.000262 main     Process ID: 1339
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.000263 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 01:23:15 (16368): Guest Log: 00:00:00.002112 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 01:23:15 (16368): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 01:23:15 (16368): Guest Log: [INFO] Mounting shared directory
2025-04-15 01:23:15 (16368): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 01:23:17 (16368): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 01:23:17 (16368): Guest Log: [INFO] Detected branch: prod
2025-04-15 01:23:17 (16368): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 01:23:17 (16368): Guest Log: Copying input files
2025-04-15 01:23:18 (16368): Guest Log: Copied input files into RunAtlas.
2025-04-15 01:23:18 (16368): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-15 01:23:18 (16368): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-15 01:23:18 (16368): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-15 01:23:18 (16368): Guest Log: Further information can be found at the LHC@home message board.
2025-04-15 01:23:25 (16368): Guest Log: 00:00:10.014254 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 561 028 000ns (GuestNow=1 744 673 004 152 084 000 ns GuestLast=1 744 680 192 713 112 000 ns fSetTimeLastLoop=true )
2025-04-15 01:23:28 (16368): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 01:23:28 (16368): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 01:23:28 (16368): Guest Log: 2.6.3.0 1616 0 32176 144867 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-15 01:23:30 (16368): Guest Log: copied the webapp to /var/www
2025-04-15 01:23:30 (16368): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-15 01:23:30 (16368): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-15 01:23:30 (16368): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 01:23:30 (16368): Guest Log:  *** Starting ATLAS job. (PandaID=6600420860 taskID=44075164) ***
2025-04-15 01:42:38 (16368): Guest Log:  *** Job finished ***
2025-04-15 01:42:38 (16368): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:30,509 | INFO     | [payload] failed_post thread has finished
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:30,588 | INFO     | [data] copytool_out thread has finished
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:32,752 | INFO     | [data] queue_monitor thread has finished
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:32,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015141021504)>', '<ExcThread(monitor, started 140014247732992)>']
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:33,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:33,254 | INFO     | [monitor] control thread has ended
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,809 | INFO     | all workflow threads have been joined
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,809 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,809 | INFO     | traces error code: 0
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,870 [wrapper] ==== pilot stdout END ====
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,873 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,877 [wrapper] pilotpid: 5941
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,881 [wrapper] Pilot exit status: 0
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:37,999 [wrapper] pandaids: 6600420860
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:38,040 [wrapper] cleanup supervisor_pilot 18937 5942
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:38,049 [wrapper] Test setup, not cleaning
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:38,054 [wrapper] apfmon messages muted
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:38,058 [wrapper] ==== wrapper stdout END ====
2025-04-15 01:42:38 (16368): Guest Log: 2025-04-14 23:42:38,063 [wrapper] ==== wrapper stderr END ====
2025-04-15 01:42:38 (16368): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 01:42:38 (16368): Guest Log:     "exeErrorCode": 65,
2025-04-15 01:42:38 (16368): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL  *** *** Wrong ATLAS layout: ATLAS-R3S-2021-03-02-00 *** ***\"",
2025-04-15 01:42:38 (16368): Guest Log:     "pilotErrorCode": 1305,
2025-04-15 01:42:38 (16368): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL  *** *** Wro",
2025-04-15 01:42:38 (16368): Guest Log:  *** Listing of results directory ***
2025-04-15 01:42:38 (16368): Guest Log: total 4084
2025-04-15 01:42:38 (16368): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 12 11:02 pilot3.tar.gz
2025-04-15 01:42:38 (16368): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 12 11:33 queuedata.json
2025-04-15 01:42:38 (16368): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 12 11:34 runpilot2-wrapper.sh
2025-04-15 01:42:38 (16368): Guest Log: -rwxr-xr-x. 1 atlas atlas    9264 Apr 14 23:23 init_data.xml
2025-04-15 01:42:38 (16368): Guest Log: -rwxr-xr-x. 1 atlas atlas  508884 Apr 14 23:23 input.tar.gz
2025-04-15 01:42:38 (16368): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 14 23:23 start_atlas.sh
2025-04-15 01:42:38 (16368): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 14 23:23 EVNT.44075162._001700.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 01:42:39 (16368): Guest Log: -rw-r--r--. 1 atlas atlas    2549 Apr 14 23:23 pandaJob.out
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas     424 Apr 14 23:23 setup.sh.local
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas  986091 Apr 14 23:24 agis_schedconf.cvmfs.json
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas 1603529 Apr 14 23:24 agis_ddmendpoints.agis.ALL.json
2025-04-15 01:42:39 (16368): Guest Log: drwx------. 4 atlas atlas    4096 Apr 14 23:24 pilot3
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas    1016 Apr 14 23:40 memory_monitor_summary.json
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas   51007 Apr 14 23:40 log.44075164._043806.job.log.tgz.1
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas      95 Apr 14 23:42 pilot_heartbeat.json
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas   11225 Apr 14 23:42 heartbeat.json
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas    4729 Apr 14 23:42 pilotlog.txt
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas  149391 Apr 14 23:42 log.44075164._043806.job.log.1
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas     188 Apr 14 23:42 output.list
2025-04-15 01:42:39 (16368): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 14 23:42 runtime_log
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas  225280 Apr 14 23:42 result.tar.gz
2025-04-15 01:42:39 (16368): Guest Log: -rw-------. 1 atlas atlas     640 Apr 14 23:42 YVaMDmSJoN7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmSLyKDmGG0ohm.diag
2025-04-15 01:42:39 (16368): Guest Log: -rw-r--r--. 1 atlas atlas   10770 Apr 14 23:42 runtime_log.err
2025-04-15 01:42:39 (16368): Guest Log: Looking for outputfile HITS.44075164._043806.pool.root.1
2025-04-15 01:42:39 (16368): Guest Log: No HITS file was produced
2025-04-15 01:42:39 (16368): Guest Log: Successfully finished the ATLAS job!
2025-04-15 01:42:39 (16368): Guest Log: Copying the results back to the shared directory!
2025-04-15 01:42:39 (16368): Guest Log:  *** Contents of shared directory: ***
2025-04-15 01:42:39 (16368): Guest Log: total 214804
2025-04-15 01:42:39 (16368): Guest Log: -rwxrwxrwx. 1 root root 219186702 Apr 14 23:22 ATLAS.root_0
2025-04-15 01:42:39 (16368): Guest Log: -rwxrwxrwx. 1 root root      9264 Apr 14 23:22 init_data.xml
2025-04-15 01:42:39 (16368): Guest Log: -rwxrwxrwx. 1 root root    508884 Apr 14 22:50 input.tar.gz
2025-04-15 01:42:39 (16368): Guest Log: -rwxrwxrwx. 1 root root    225280 Apr 14 23:42 result.tar.gz
2025-04-15 01:42:39 (16368): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 22:50 start_atlas.sh
2025-04-15 01:42:39 (16368): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 01:42:39 (16368): VM Completion File Detected.
2025-04-15 01:42:39 (16368): Powering off VM.
2025-04-15 01:42:39 (16368): Successfully stopped VM.
2025-04-15 01:42:39 (16368): Deregistering VM. (boinc_8c3be063fa00be10, slot#3)
2025-04-15 01:42:39 (16368): Removing network bandwidth throttle group from VM.
2025-04-15 01:42:40 (16368): Removing VM from VirtualBox.
01:42:45 (16368): called boinc_finish(0)

</stderr_txt>
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