Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 00:22:13 (6468): Detected: vboxwrapper 26206
2025-04-15 00:22:13 (6468): Detected: BOINC client v8.0.2
2025-04-15 00:22:13 (6468): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-15 00:22:13 (6468): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 00:22:14 (6468): Create VM. (boinc_54f6af51060b2dcf, slot#1)
2025-04-15 00:22:14 (6468): Setting Memory Size for VM. (4700MB)
2025-04-15 00:22:15 (6468): Setting CPU Count for VM. (7)
2025-04-15 00:22:15 (6468): Setting Chipset Options for VM.
2025-04-15 00:22:15 (6468): Setting Graphics Controller Options for VM.
2025-04-15 00:22:15 (6468): Setting Boot Options for VM.
2025-04-15 00:22:16 (6468): Setting Network Configuration for NAT.
2025-04-15 00:22:16 (6468): Enabling VM Network Access.
2025-04-15 00:22:16 (6468): Disabling USB Support for VM.
2025-04-15 00:22:16 (6468): Disabling COM Port Support for VM.
2025-04-15 00:22:17 (6468): Disabling LPT Port Support for VM.
2025-04-15 00:22:17 (6468): Disabling Audio Support for VM.
2025-04-15 00:22:17 (6468): Disabling Clipboard Support for VM.
2025-04-15 00:22:17 (6468): Disabling Drag and Drop Support for VM.
2025-04-15 00:22:18 (6468): Adding storage controller(s) to VM.
2025-04-15 00:22:18 (6468): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 00:22:21 (6468): Adding VirtualBox Guest Additions to VM.
2025-04-15 00:22:21 (6468): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 00:22:22 (6468): forwarding host port 49980 to guest port 80
2025-04-15 00:22:22 (6468): Enabling remote desktop for VM.
2025-04-15 00:22:22 (6468): Required extension pack not installed, remote desktop not enabled.
2025-04-15 00:22:22 (6468): Enabling shared directory for VM.
2025-04-15 00:22:23 (6468): Starting VM using VBoxManage interface. (boinc_54f6af51060b2dcf, slot#1)
2025-04-15 00:22:29 (6468): Successfully started VM. (PID = '6600')
2025-04-15 00:22:29 (6468): Reporting VM Process ID to BOINC.
2025-04-15 00:22:29 (6468): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-15 00:22:29 (6468): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 00:22:29 (6468): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 00:22:29 (6468): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 00:22:29 (6468): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 00:22:29 (6468): Detected: Web Application Enabled (http://localhost:49980)
2025-04-15 00:22:29 (6468): Preference change detected
2025-04-15 00:22:29 (6468): Setting CPU throttle for VM. (90%)
2025-04-15 00:22:29 (6468): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 00:22:31 (6468): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 00:22:31 (6468): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 00:22:38 (6468): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 00:22:38 (6468): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 00:22:38 (6468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 00:22:48 (6468): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 00:22:48 (6468): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 00:23:05 (6468): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.000196 main     Log opened 2025-04-15T00:23:03.559050000Z
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.000358 main     OS Product: Linux
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.000428 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.000478 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.000533 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.000535 main     Process ID: 1339
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.000535 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 00:23:05 (6468): Guest Log: 00:00:00.001552 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 00:23:06 (6468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 00:23:06 (6468): Guest Log: [INFO] Mounting shared directory
2025-04-15 00:23:06 (6468): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 00:23:14 (6468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 00:23:14 (6468): Guest Log: [INFO] Detected branch: prod
2025-04-15 00:23:14 (6468): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 00:23:14 (6468): Guest Log: Copying input files
2025-04-15 00:23:15 (6468): Guest Log: 00:00:10.003377 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 553 678 000ns (GuestNow=1 744 665 795 008 253 000 ns GuestLast=1 744 676 583 561 931 000 ns fSetTimeLastLoop=true )
2025-04-15 00:23:16 (6468): Guest Log: Copied input files into RunAtlas.
2025-04-15 00:23:16 (6468): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-15 00:23:16 (6468): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-15 00:23:16 (6468): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-15 00:23:16 (6468): Guest Log: Further information can be found at the LHC@home message board.
2025-04-15 00:23:25 (6468): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 00:23:26 (6468): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 00:23:26 (6468): Guest Log: 2.6.3.0 1635 0 30184 144862 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-15 00:23:30 (6468): Guest Log: copied the webapp to /var/www
2025-04-15 00:23:30 (6468): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-15 00:23:30 (6468): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-15 00:23:30 (6468): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 00:23:30 (6468): Guest Log:  *** Starting ATLAS job. (PandaID=6602133168 taskID=44075483) ***
2025-04-15 02:02:35 (6468): Status Report: Elapsed Time: '6000.000000'
2025-04-15 02:02:35 (6468): Status Report: CPU Time: '27885.187500'
2025-04-15 03:42:42 (6468): Status Report: Elapsed Time: '12000.000000'
2025-04-15 03:42:42 (6468): Status Report: CPU Time: '65501.953125'
2025-04-15 05:22:49 (6468): Status Report: Elapsed Time: '18000.000000'
2025-04-15 05:22:49 (6468): Status Report: CPU Time: '103110.343750'
2025-04-15 05:28:29 (6468): Guest Log:  *** Job finished ***
2025-04-15 05:28:29 (6468): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:19,122 | INFO     | [job] validate thread has finished
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:19,445 | INFO     | [data] copytool_out thread has finished
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:22,548 | INFO     | [data] queue_monitor thread has finished
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:23,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455582410560)>', '<ExcThread(monitor, started 140454481880832)>']
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:23,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:23,826 | INFO     | [monitor] control thread has ended
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,264 | INFO     | all workflow threads have been joined
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,264 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,265 | INFO     | traces error code: 0
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,400 [wrapper] ==== pilot stdout END ====
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,406 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,412 [wrapper] pilotpid: 5980
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,419 [wrapper] Pilot exit status: 0
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,477 [wrapper] pandaids: 6602133168
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,517 [wrapper] cleanup supervisor_pilot 18118 5981
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,523 [wrapper] Test setup, not cleaning
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,529 [wrapper] apfmon messages muted
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,536 [wrapper] ==== wrapper stdout END ====
2025-04-15 05:28:29 (6468): Guest Log: 2025-04-15 02:28:28,542 [wrapper] ==== wrapper stderr END ====
2025-04-15 05:28:29 (6468): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 05:28:29 (6468): Guest Log:     "exeErrorCode": 0,
2025-04-15 05:28:29 (6468): Guest Log:     "exeErrorDiag": "",
2025-04-15 05:28:29 (6468): Guest Log:     "pilotErrorCode": 0,
2025-04-15 05:28:29 (6468): Guest Log:     "pilotErrorDiag": "",
2025-04-15 05:28:29 (6468): Guest Log:  *** Listing of results directory ***
2025-04-15 05:28:29 (6468): Guest Log: total 199276
2025-04-15 05:28:29 (6468): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 17:05 pilot3.tar.gz
2025-04-15 05:28:29 (6468): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 17:09 runpilot2-wrapper.sh
2025-04-15 05:28:29 (6468): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 17:09 queuedata.json
2025-04-15 05:28:29 (6468): Guest Log: -rwxr-xr-x. 1 atlas atlas      8860 Apr 14 21:23 init_data.xml
2025-04-15 05:28:29 (6468): Guest Log: -rwxr-xr-x. 1 atlas atlas    508892 Apr 14 21:23 input.tar.gz
2025-04-15 05:28:29 (6468): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 14 21:23 start_atlas.sh
2025-04-15 05:28:29 (6468): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 21:23 EVNT.44075481._000750.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 05:28:29 (6468): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 14 21:23 pandaJob.out
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas       424 Apr 14 21:23 setup.sh.local
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas    986091 Apr 14 21:24 agis_schedconf.cvmfs.json
2025-04-15 05:28:29 (6468): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 21:24 pilot3
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas 196581613 Apr 15 02:26 HITS.44075483._018956.pool.root.1
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas      1043 Apr 15 02:27 memory_monitor_summary.json
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 02:27 agis_ddmendpoints.agis.ALL.json
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas    408381 Apr 15 02:27 log.44075483._018956.job.log.tgz.1
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas        95 Apr 15 02:28 pilot_heartbeat.json
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas      7716 Apr 15 02:28 heartbeat.json
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas      4722 Apr 15 02:28 pilotlog.txt
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas   1441292 Apr 15 02:28 log.44075483._018956.job.log.1
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 02:28 output.list
2025-04-15 05:28:29 (6468): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 02:28 runtime_log
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas   1873920 Apr 15 02:28 result.tar.gz
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas       652 Apr 15 02:28 WttKDm7TcO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmZX0KDmGEoEcm.diag
2025-04-15 05:28:29 (6468): Guest Log: -rw-r--r--. 1 atlas atlas     10908 Apr 15 02:28 runtime_log.err
2025-04-15 05:28:29 (6468): Guest Log: Looking for outputfile HITS.44075483._018956.pool.root.1
2025-04-15 05:28:29 (6468): Guest Log: HITS file was successfully produced
2025-04-15 05:28:29 (6468): Guest Log: -rw-------. 1 atlas atlas 196581613 Apr 15 02:26 /home/atlas/RunAtlas/HITS.44075483._018956.pool.root.1
2025-04-15 05:28:31 (6468): Guest Log: Successfully finished the ATLAS job!
2025-04-15 05:28:31 (6468): Guest Log: Copying the results back to the shared directory!
2025-04-15 05:28:31 (6468): Guest Log:  *** Contents of shared directory: ***
2025-04-15 05:28:31 (6468): Guest Log: total 416056
2025-04-15 05:28:31 (6468): Guest Log: -rwxrwxrwx. 1 root root 227033109 Apr 14 21:22 ATLAS.root_0
2025-04-15 05:28:31 (6468): Guest Log: -rwxrwxrwx. 1 root root 196581613 Apr 15 02:28 HITS.pool.root.1
2025-04-15 05:28:31 (6468): Guest Log: -rwxrwxrwx. 1 root root      8860 Apr 14 21:22 init_data.xml
2025-04-15 05:28:31 (6468): Guest Log: -rwxrwxrwx. 1 root root    508892 Apr 14 21:22 input.tar.gz
2025-04-15 05:28:31 (6468): Guest Log: -rwxrwxrwx. 1 root root   1873920 Apr 15 02:28 result.tar.gz
2025-04-15 05:28:31 (6468): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 21:22 start_atlas.sh
2025-04-15 05:28:31 (6468): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 05:28:31 (6468): VM Completion File Detected.
2025-04-15 05:28:31 (6468): Powering off VM.
2025-04-15 05:28:32 (6468): Successfully stopped VM.
2025-04-15 05:28:32 (6468): Deregistering VM. (boinc_54f6af51060b2dcf, slot#1)
2025-04-15 05:28:32 (6468): Removing network bandwidth throttle group from VM.
2025-04-15 05:28:32 (6468): Removing VM from VirtualBox.
05:28:37 (6468): called boinc_finish(0)

</stderr_txt>
]]>

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