Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 20:47:36 (7336): Detected: vboxwrapper 26206
2025-04-14 20:47:36 (7336): Detected: BOINC client v8.0.2
2025-04-14 20:47:37 (7336): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-14 20:47:37 (7336): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 20:47:38 (7336): Create VM. (boinc_2703bb1840e6b84a, slot#1)
2025-04-14 20:47:38 (7336): Setting Memory Size for VM. (4200MB)
2025-04-14 20:47:39 (7336): Setting CPU Count for VM. (2)
2025-04-14 20:47:39 (7336): Setting Chipset Options for VM.
2025-04-14 20:47:40 (7336): Setting Graphics Controller Options for VM.
2025-04-14 20:47:40 (7336): Setting Boot Options for VM.
2025-04-14 20:47:40 (7336): Setting Network Configuration for NAT.
2025-04-14 20:47:40 (7336): Enabling VM Network Access.
2025-04-14 20:47:41 (7336): Disabling USB Support for VM.
2025-04-14 20:47:41 (7336): Disabling COM Port Support for VM.
2025-04-14 20:47:41 (7336): Disabling LPT Port Support for VM.
2025-04-14 20:47:42 (7336): Disabling Audio Support for VM.
2025-04-14 20:47:42 (7336): Disabling Clipboard Support for VM.
2025-04-14 20:47:42 (7336): Disabling Drag and Drop Support for VM.
2025-04-14 20:47:43 (7336): Adding storage controller(s) to VM.
2025-04-14 20:47:43 (7336): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 20:47:46 (7336): Adding VirtualBox Guest Additions to VM.
2025-04-14 20:47:46 (7336): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 20:47:47 (7336): forwarding host port 64554 to guest port 80
2025-04-14 20:47:47 (7336): Enabling remote desktop for VM.
2025-04-14 20:47:48 (7336): Enabling shared directory for VM.
2025-04-14 20:47:49 (7336): Starting VM using VBoxManage interface. (boinc_2703bb1840e6b84a, slot#1)
2025-04-14 20:47:57 (7336): Successfully started VM. (PID = '1252')
2025-04-14 20:47:57 (7336): Reporting VM Process ID to BOINC.
2025-04-14 20:47:57 (7336): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-14 20:47:57 (7336): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 20:47:57 (7336): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 20:47:57 (7336): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 20:47:57 (7336): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 20:47:57 (7336): Detected: Web Application Enabled (http://localhost:64554)
2025-04-14 20:47:57 (7336): Detected: Remote Desktop Enabled (localhost:64555)
2025-04-14 20:47:57 (7336): Preference change detected
2025-04-14 20:47:57 (7336): Setting CPU throttle for VM. (80%)
2025-04-14 20:47:58 (7336): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 20:47:59 (7336): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 20:47:59 (7336): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 20:48:11 (7336): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 20:48:11 (7336): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 20:48:11 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 20:48:12 (7336): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 20:48:52 (7336): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 20:48:52 (7336): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 20:48:57 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:49:17 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:49:47 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:50:06 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:50:33 (7336): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.000208 main     Log opened 2025-04-14T20:49:53.256340000Z
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.000426 main     OS Product: Linux
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.000474 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.000517 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.000560 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.000561 main     Process ID: 1244
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.000562 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 20:50:33 (7336): Guest Log: 00:00:00.058534 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 20:50:34 (7336): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 20:50:34 (7336): Guest Log: [INFO] Mounting shared directory
2025-04-14 20:50:35 (7336): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 20:50:42 (7336): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 20:50:42 (7336): Guest Log: [INFO] Detected branch: prod
2025-04-14 20:50:43 (7336): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 20:50:43 (7336): Guest Log: Copying input files
2025-04-14 20:50:43 (7336): Guest Log: 00:00:10.352850 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 549 720 079 000ns (GuestNow=1 744 660 243 800 924 000 ns GuestLast=1 744 663 793 521 003 000 ns fSetTimeLastLoop=true )
2025-04-14 20:50:49 (7336): Guest Log: Copied input files into RunAtlas.
2025-04-14 20:50:49 (7336): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 20:50:50 (7336): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 20:50:50 (7336): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 20:50:50 (7336): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 20:51:02 (7336): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 20:51:03 (7336): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 20:51:03 (7336): Guest Log: 2.6.3.0 1534 0 32128 144861 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 20:51:11 (7336): Guest Log: copied the webapp to /var/www
2025-04-14 20:51:12 (7336): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-14 20:51:12 (7336): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-14 20:51:13 (7336): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 20:51:13 (7336): Guest Log:  *** Starting ATLAS job. (PandaID=6602129624 taskID=44075483) ***
2025-04-14 20:51:16 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:51:36 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:51:57 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:52:17 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:53:07 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:53:27 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:55:38 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:55:57 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:56:07 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:56:28 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:56:37 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:56:57 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:57:17 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:57:37 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:57:57 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:58:18 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:58:27 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:58:48 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:59:08 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:59:28 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:59:47 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 21:00:07 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 21:00:17 (7336): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 21:00:39 (7336): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 21:08:01 (7336): Guest Log:  *** Job finished ***
2025-04-14 21:08:01 (7336): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:03:56,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:03:57,073 | INFO     | [job] queue monitor thread has finished
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:03:57,568 | INFO     | [data] queue_monitor thread has finished
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:03:58,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139813850470208)>', '<ExcThread(monitor, started 139813197969152)>']
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:03:59,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:03:59,091 | INFO     | [monitor] control thread has ended
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,670 | INFO     | all workflow threads have been joined
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,671 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,671 | INFO     | traces error code: 0
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,671 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,869 [wrapper] ==== pilot stdout END ====
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,882 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,897 [wrapper] pilotpid: 5865
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:03,912 [wrapper] Pilot exit status: 0
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:04,042 [wrapper] pandaids: 6602129624
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:04,119 [wrapper] cleanup supervisor_pilot  5871 5866
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:04,134 [wrapper] Test setup, not cleaning
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:04,148 [wrapper] apfmon messages muted
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:04,162 [wrapper] ==== wrapper stdout END ====
2025-04-14 21:08:01 (7336): Guest Log: 2025-04-14 20:04:04,176 [wrapper] ==== wrapper stderr END ====
2025-04-14 21:08:01 (7336): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 21:08:01 (7336): Guest Log:     "exeErrorCode": 65,
2025-04-14 21:08:01 (7336): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5539.37 KB/s",
2025-04-14 21:08:01 (7336): Guest Log:     "pilotErrorCode": 1305,
2025-04-14 21:08:01 (7336): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5539.37 KB/s",
2025-04-14 21:08:01 (7336): Guest Log:  *** Listing of results directory ***
2025-04-14 21:08:01 (7336): Guest Log: total 4160
2025-04-14 21:08:01 (7336): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 14 14:17 pilot3.tar.gz
2025-04-14 21:08:01 (7336): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 14 14:25 queuedata.json
2025-04-14 21:08:01 (7336): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 14 14:26 runpilot2-wrapper.sh
2025-04-14 21:08:01 (7336): Guest Log: -rwxr-xr-x. 1 atlas atlas    6095 Apr 14 19:50 init_data.xml
2025-04-14 21:08:01 (7336): Guest Log: -rwxr-xr-x. 1 atlas atlas  508892 Apr 14 19:50 input.tar.gz
2025-04-14 21:08:01 (7336): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 14 19:50 start_atlas.sh
2025-04-14 21:08:01 (7336): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 14 19:50 EVNT.44075481._000702.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 21:08:01 (7336): Guest Log: -rw-r--r--. 1 atlas atlas    2578 Apr 14 19:51 pandaJob.out
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas     424 Apr 14 19:51 setup.sh.local
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas  986091 Apr 14 19:53 agis_schedconf.cvmfs.json
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas 1603529 Apr 14 19:53 agis_ddmendpoints.agis.ALL.json
2025-04-14 21:08:01 (7336): Guest Log: drwx------. 4 atlas atlas    4096 Apr 14 19:53 pilot3
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas   51376 Apr 14 20:01 log.44075483._017748.job.log.tgz.1
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas      95 Apr 14 20:03 pilot_heartbeat.json
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas    8225 Apr 14 20:03 heartbeat.json
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas    4536 Apr 14 20:04 pilotlog.txt
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas  194122 Apr 14 20:04 log.44075483._017748.job.log.1
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas     188 Apr 14 20:04 output.list
2025-04-14 21:08:01 (7336): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 14 20:04 runtime_log
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas  266240 Apr 14 20:04 result.tar.gz
2025-04-14 21:08:01 (7336): Guest Log: -rw-r--r--. 1 atlas atlas   10772 Apr 14 20:04 runtime_log.err
2025-04-14 21:08:01 (7336): Guest Log: -rw-------. 1 atlas atlas     642 Apr 14 20:04 CiANDm9wZO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm0NWLDmyfyazm.diag
2025-04-14 21:08:01 (7336): Guest Log: Looking for outputfile HITS.44075483._017748.pool.root.1
2025-04-14 21:08:01 (7336): Guest Log: No HITS file was produced
2025-04-14 21:08:01 (7336): Guest Log: Successfully finished the ATLAS job!
2025-04-14 21:08:01 (7336): Guest Log: Copying the results back to the shared directory!
2025-04-14 21:08:02 (7336): Guest Log:  *** Contents of shared directory: ***
2025-04-14 21:08:02 (7336): Guest Log: total 219108
2025-04-14 21:08:02 (7336): Guest Log: -rwxrwxrwx. 1 root root 223555812 Apr 14 19:47 ATLAS.root_0
2025-04-14 21:08:02 (7336): Guest Log: -rwxrwxrwx. 1 root root      6095 Apr 14 19:47 init_data.xml
2025-04-14 21:08:02 (7336): Guest Log: -rwxrwxrwx. 1 root root    508892 Apr 14 18:23 input.tar.gz
2025-04-14 21:08:02 (7336): Guest Log: -rwxrwxrwx. 1 root root    266240 Apr 14  2025 result.tar.gz
2025-04-14 21:08:02 (7336): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 18:23 start_atlas.sh
2025-04-14 21:08:02 (7336): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 21:08:02 (7336): VM Completion File Detected.
2025-04-14 21:08:02 (7336): Powering off VM.
2025-04-14 21:08:03 (7336): Successfully stopped VM.
2025-04-14 21:08:03 (7336): Deregistering VM. (boinc_2703bb1840e6b84a, slot#1)
2025-04-14 21:08:04 (7336): Removing network bandwidth throttle group from VM.
2025-04-14 21:08:04 (7336): Removing VM from VirtualBox.
21:08:09 (7336): called boinc_finish(0)

</stderr_txt>
]]>

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