Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:53:48 (3913): wrapper (7.7.26015): starting
13:53:48 (3913): wrapper: running run_atlas (--nthreads 12)
[2025-04-14 13:53:48] Arguments: --nthreads 12
[2025-04-14 13:53:48] Threads: 12
[2025-04-14 13:53:48] Checking for CVMFS
[2025-04-14 13:53:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-14 13:53:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-14 13:53:48] Running cvmfs_config stat atlas.cern.ch
[2025-04-14 13:53:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-14 13:53:48] 2.11.2.0 13814 392504 163256 144858 3 56 14352104 20275200 1 130560 0 17937973 99.989 5499605 53259 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-14 13:53:48] CVMFS is ok
[2025-04-14 13:53:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-14 13:53:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-14 13:53:48] Further information can be found at the LHC@home message board.
[2025-04-14 13:53:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-14 13:53:48] Checking for apptainer binary...
[2025-04-14 13:53:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-14 13:53:48] Running /usr/bin/apptainer --version
[2025-04-14 13:53:48] apptainer version 1.3.2-1.el7
[2025-04-14 13:53:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-14 13:53:50] c-205-7.aglt2.org
[2025-04-14 13:53:50] apptainer works
[2025-04-14 13:53:50] Set ATHENA_PROC_NUMBER=12
[2025-04-14 13:53:50] Set ATHENA_CORE_NUMBER=12
[2025-04-14 13:53:50] Starting ATLAS job with PandaID=6602129456
[2025-04-14 13:53:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-14 15:13:26]  *** The last 200 lines of the pilot log: ***
[2025-04-14 15:13:26]  lfn=log.44075483._017580.job.log.tgz.1
[2025-04-14 15:13:26]  mtime=0
[2025-04-14 15:13:26]  protocol_id=None
[2025-04-14 15:13:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-14 15:13:26]  replicas=None
[2025-04-14 15:13:26]  scope=mc23_13p6TeV
[2025-04-14 15:13:26]  status=None
[2025-04-14 15:13:26]  status_code=0
[2025-04-14 15:13:26]  storage_token=
[2025-04-14 15:13:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6602129456/log.44075483._017580.job.log.tgz.1
[2025-04-14 15:13:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/4f/log.44075483._017580.job.log.tgz.1
[2025-04-14 15:13:26]  workdir=None
[2025-04-14 15:13:26] ]
[2025-04-14 15:13:26] 2025-04-14 19:12:59,668 | INFO     | transferring file log.44075483._017580.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6602129456/log.44075483._017580.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-14 15:13:26] 2025-04-14 19:12:59,669 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6602129456/log.44075483._017580.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._017580.job
[2025-04-14 15:13:26] 2025-04-14 19:12:59,691 | INFO     | adding to output.list: log.44075483._017580.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/4f/log.44075483._017580.job.log.tg
[2025-04-14 15:13:26] 2025-04-14 19:12:59,692 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-14 15:13:26] 2025-04-14 19:12:59,692 | INFO     | summary of transferred files:
[2025-04-14 15:13:26] 2025-04-14 19:12:59,692 | INFO     |  -- lfn=log.44075483._017580.job.log.tgz.1, status_code=0, status=transferred
[2025-04-14 15:13:26] 2025-04-14 19:12:59,692 | INFO     | stage-out finished correctly
[2025-04-14 15:13:26] 2025-04-14 19:13:00,047 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-14 15:13:26] 2025-04-14 19:13:01,827 | INFO     | monitor loop #354: job 0:6602129456 is in state 'finished'
[2025-04-14 15:13:26] 2025-04-14 19:13:01,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-14 15:13:26] 2025-04-14 19:13:02,090 | INFO     | job 6602129456 has state=finished
[2025-04-14 15:13:26] 2025-04-14 19:13:02,090 | INFO     | preparing for final server update for job 6602129456 in state='finished'
[2025-04-14 15:13:26] 2025-04-14 19:13:02,154 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-14 15:13:26] 2025-04-14 19:13:02,154 | INFO     | this job has now completed (state=finished)
[2025-04-14 15:13:26] 2025-04-14 19:13:02,154 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-14 15:13:26] 2025-04-14 19:13:02,154 | INFO     | log transfer has been attempted: DONE
[2025-04-14 15:13:26] 2025-04-14 19:13:02,155 | INFO     | job 6602129456 has finished - writing final server update
[2025-04-14 15:13:26] 2025-04-14 19:13:02,155 | INFO     | total number of processed events: 400 (read)
[2025-04-14 15:13:26] 2025-04-14 19:13:02,156 | INFO     | executing command: lscpu
[2025-04-14 15:13:26] 2025-04-14 19:13:02,182 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-14 15:13:26] 2025-04-14 19:13:04,337 | INFO     | monitor loop #355: job 0:6602129456 is in state 'finished'
[2025-04-14 15:13:26] 2025-04-14 19:13:04,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-14 15:13:26] 2025-04-14 19:13:05,614 | INFO     | 4745s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-14 15:13:26] 2025-04-14 19:13:06,840 | INFO     | monitor loop #356: job 0:6602129456 is in state 'finished'
[2025-04-14 15:13:26] 2025-04-14 19:13:06,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-14 15:13:26] 2025-04-14 19:13:06,930 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-14 15:13:26] 2025-04-14 19:13:06,931 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6602129456/memory_monitor_summary.json (trf name=prmon)
[2025-04-14 15:13:26] 2025-04-14 19:13:06,932 | INFO     | extracted standard info from prmon json
[2025-04-14 15:13:26] 2025-04-14 19:13:06,932 | INFO     | extracted standard memory fields from prmon json
[2025-04-14 15:13:26] 2025-04-14 19:13:06,932 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-14 15:13:26] 2025-04-14 19:13:06,932 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-14 15:13:26] 2025-04-14 19:13:06,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-14 15:13:26] 2025-04-14 19:13:06,935 | INFO     | fitting pss+swap vs Time
[2025-04-14 15:13:26] 2025-04-14 19:13:06,936 | INFO     | sum of square deviations: 110960220.0
[2025-04-14 15:13:26] 2025-04-14 19:13:06,936 | INFO     | sum of deviations: 16706071097.999998
[2025-04-14 15:13:26] 2025-04-14 19:13:06,936 | INFO     | mean x: 1744655713.0
[2025-04-14 15:13:26] 2025-04-14 19:13:06,936 | INFO     | mean y: 2582066.0704225353
[2025-04-14 15:13:26] 2025-04-14 19:13:06,937 | INFO     | -- intersect: -262671215650.89404
[2025-04-14 15:13:26] 2025-04-14 19:13:06,937 | INFO     | intersect: -262671215650.89404
[2025-04-14 15:13:26] 2025-04-14 19:13:06,937 | INFO     | chi2: 2.222580434802875
[2025-04-14 15:13:26] 2025-04-14 19:13:06,937 | INFO     | -- intersect: -262671215650.89404
[2025-04-14 15:13:26] 2025-04-14 19:13:06,937 | INFO     | current memory leak: 150.56 B/s (using 71 data points, chi2=2.22)
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | ..............................
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . Timing measurements:
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . get job = 0 s
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . initial setup = 2 s
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . payload setup = 7 s
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . stage-in = 0 s
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . payload execution = 4706 s
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . stage-out = 0 s
[2025-04-14 15:13:26] 2025-04-14 19:13:06,938 | INFO     | . log creation = 0 s
[2025-04-14 15:13:26] 2025-04-14 19:13:06,939 | INFO     | ..............................
[2025-04-14 15:13:26] 2025-04-14 19:13:07,021 | INFO     | 
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | job summary report
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | --------------------------------------------------
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | PanDA job id: 6602129456
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | task id: 44075483
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | errors: (none)
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | pilot state: finished 
[2025-04-14 15:13:26] 2025-04-14 19:13:07,022 | INFO     | transexitcode: 0
[2025-04-14 15:13:26] 2025-04-14 19:13:07,023 | INFO     | exeerrorcode: 0
[2025-04-14 15:13:26] 2025-04-14 19:13:07,023 | INFO     | exeerrordiag: 
[2025-04-14 15:13:26] 2025-04-14 19:13:07,023 | INFO     | exitcode: 0
[2025-04-14 15:13:26] 2025-04-14 19:13:07,023 | INFO     | exitmsg: OK
[2025-04-14 15:13:26] 2025-04-14 19:13:07,023 | INFO     | cpuconsumptiontime: 45199 s
[2025-04-14 15:13:26] 2025-04-14 19:13:07,023 | INFO     | nevents: 400
[2025-04-14 15:13:26] 2025-04-14 19:13:07,023 | INFO     | neventsw: 0
[2025-04-14 15:13:26] 2025-04-14 19:13:07,024 | INFO     | pid: 14001
[2025-04-14 15:13:26] 2025-04-14 19:13:07,024 | INFO     | pgrp: 14001
[2025-04-14 15:13:26] 2025-04-14 19:13:07,024 | INFO     | corecount: 12
[2025-04-14 15:13:26] 2025-04-14 19:13:07,024 | INFO     | event service: False
[2025-04-14 15:13:26] 2025-04-14 19:13:07,024 | INFO     | sizes: {0: 2417363, 5: 2417569, 11: 2417625, 4717: 2443661, 4718: 2443660, 4720: 2452841, 4727: 2452955}
[2025-04-14 15:13:26] 2025-04-14 19:13:07,024 | INFO     | --------------------------------------------------
[2025-04-14 15:13:26] 2025-04-14 19:13:07,025 | INFO     | 
[2025-04-14 15:13:26] 2025-04-14 19:13:07,025 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-14 15:13:26] 2025-04-14 19:13:07,049 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,049 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,050 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,050 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,050 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,050 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,050 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,050 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,051 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,051 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,051 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,052 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-14 15:13:26] 2025-04-14 19:13:07,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,052 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-14 15:13:26] 2025-04-14 19:13:07,053 | INFO     | job 6602129456 has completed (purged errors)
[2025-04-14 15:13:26] 2025-04-14 19:13:07,053 | INFO     | overall cleanup function is called
[2025-04-14 15:13:26] 2025-04-14 19:13:08,059 | INFO     | --- collectZombieJob: --- 10, [14001]
[2025-04-14 15:13:26] 2025-04-14 19:13:08,059 | INFO     | zombie collector waiting for pid 14001
[2025-04-14 15:13:26] 2025-04-14 19:13:08,059 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-14 15:13:26] 2025-04-14 19:13:08,059 | INFO     | collected zombie processes
[2025-04-14 15:13:26] 2025-04-14 19:13:08,059 | INFO     | will attempt to kill all subprocesses of pid=14001
[2025-04-14 15:13:26] 2025-04-14 19:13:08,150 | INFO     | process IDs to be killed: [14001] (in reverse order)
[2025-04-14 15:13:26] 2025-04-14 19:13:08,203 | WARNING  | found no corresponding commands to process id(s)
[2025-04-14 15:13:26] 2025-04-14 19:13:08,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-14 15:13:26] 2025-04-14 19:13:08,206 | INFO     | did not find any defunct processes belonging to 14001
[2025-04-14 15:13:26] 2025-04-14 19:13:08,208 | INFO     | did not find any defunct processes belonging to 14001
[2025-04-14 15:13:26] 2025-04-14 19:13:08,208 | INFO     | ready for new job
[2025-04-14 15:13:26] 2025-04-14 19:13:08,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-14 15:13:26] 2025-04-14 19:13:08,209 | INFO     | **************************************
[2025-04-14 15:13:26] 2025-04-14 19:13:08,209 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-14 15:13:26] 2025-04-14 19:13:08,209 | INFO     | **************************************
[2025-04-14 15:13:26] 2025-04-14 19:13:08,210 | INFO     | 
[2025-04-14 15:13:26] 2025-04-14 19:13:08,210 | INFO     | architecture information:
[2025-04-14 15:13:26] 2025-04-14 19:13:08,211 | INFO     | executing command: cat /etc/os-release
[2025-04-14 15:13:26] 2025-04-14 19:13:08,225 | INFO     | cat /etc/os-release:
[2025-04-14 15:13:26] NAME="CentOS Linux"
[2025-04-14 15:13:26] VERSION="7 (Core)"
[2025-04-14 15:13:26] ID="centos"
[2025-04-14 15:13:26] ID_LIKE="rhel fedora"
[2025-04-14 15:13:26] VERSION_ID="7"
[2025-04-14 15:13:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-14 15:13:26] ANSI_COLOR="0;31"
[2025-04-14 15:13:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-14 15:13:26] HOME_URL="https://www.centos.org/"
[2025-04-14 15:13:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-14 15:13:26] 
[2025-04-14 15:13:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-14 15:13:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-14 15:13:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-14 15:13:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-14 15:13:26] 
[2025-04-14 15:13:26] 2025-04-14 19:13:08,225 | INFO     | **************************************
[2025-04-14 15:13:26] 2025-04-14 19:13:08,728 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-14 15:13:26] 2025-04-14 19:13:08,744 | INFO     | PID=7516 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-14 15:13:26] 2025-04-14 19:13:08,747 | INFO     | sufficient remaining disk space (29393682432 B)
[2025-04-14 15:13:26] 2025-04-14 19:13:08,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-14 15:13:26] 2025-04-14 19:13:08,747 | INFO     | current server update state: UPDATING_FINAL
[2025-04-14 15:13:26] 2025-04-14 19:13:08,747 | INFO     | update_server=False
[2025-04-14 15:13:26] 2025-04-14 19:13:08,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-14 15:13:26] 2025-04-14 19:13:08,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-14 15:13:26] 2025-04-14 19:13:08,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-14 15:13:26] 2025-04-14 19:13:08,748 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-14 15:13:26] 2025-04-14 19:13:08,749 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-14 15:13:26] 2025-04-14 19:13:08,749 | INFO     | aborting loop
[2025-04-14 15:13:26] 2025-04-14 19:13:08,750 | INFO     | found 0 job(s) in 20 queues
[2025-04-14 15:13:26] 2025-04-14 19:13:08,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-14 15:13:26] 2025-04-14 19:13:08,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-14 15:13:26] 2025-04-14 19:13:09,179 | INFO     | all job control threads have been joined
[2025-04-14 15:13:26] 2025-04-14 19:13:09,265 | INFO     | all data control threads have been joined
[2025-04-14 15:13:26] 2025-04-14 19:13:09,753 | INFO     | [job] retrieve thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:09,754 | INFO     | [job] queue monitor thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:09,755 | INFO     | [job] job monitor thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:09,759 | INFO     | all payload control threads have been joined
[2025-04-14 15:13:26] 2025-04-14 19:13:09,880 | INFO     | [payload] validate_pre thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:10,004 | INFO     | [payload] execute_payloads thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:10,184 | INFO     | [job] control thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:10,271 | INFO     | [data] control thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:10,335 | INFO     | [data] copytool_in thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:10,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-14 15:13:26] 2025-04-14 19:13:10,755 | INFO     | [data] copytool_out thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:10,763 | INFO     | [payload] control thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:11,021 | INFO     | [payload] failed_post thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:11,138 | INFO     | [job] create_data_payload thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:11,145 | INFO     | [job] validate thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:11,294 | INFO     | [payload] validate_post thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:14,646 | INFO     | [data] queue_monitor thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:19,124 | INFO     | job.realtimelogging is not enabled
[2025-04-14 15:13:26] 2025-04-14 19:13:20,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-14 15:13:26] 2025-04-14 19:13:21,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403474487104)>', '<ExcThread(monitor, started 140403177137920)>']
[2025-04-14 15:13:26] 2025-04-14 19:13:21,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-14 15:13:26] 2025-04-14 19:13:21,817 | INFO     | [monitor] control thread has ended
[2025-04-14 15:13:26] 2025-04-14 19:13:26,141 | INFO     | all workflow threads have been joined
[2025-04-14 15:13:26] 2025-04-14 19:13:26,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-14 15:13:26] 2025-04-14 19:13:26,142 | INFO     | traces error code: 0
[2025-04-14 15:13:26] 2025-04-14 19:13:26,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-14 15:13:26] 2025-04-14 19:13:26,228 [wrapper] ==== pilot stdout END ====
[2025-04-14 15:13:26] 2025-04-14 19:13:26,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-14 15:13:26] 2025-04-14 19:13:26,235 [wrapper] pilotpid: 7516
[2025-04-14 15:13:26] 2025-04-14 19:13:26,239 [wrapper] Pilot exit status: 0
[2025-04-14 15:13:26] 2025-04-14 19:13:26,254 [wrapper] pandaids: 6602129456
[2025-04-14 15:13:26] 2025-04-14 19:13:26,292 [wrapper] cleanup supervisor_pilot 28465 7517
[2025-04-14 15:13:26] 2025-04-14 19:13:26,296 [wrapper] Test setup, not cleaning
[2025-04-14 15:13:26] 2025-04-14 19:13:26,300 [wrapper] apfmon messages muted
[2025-04-14 15:13:26] 2025-04-14 19:13:26,304 [wrapper] ==== wrapper stdout END ====
[2025-04-14 15:13:26] 2025-04-14 19:13:26,308 [wrapper] ==== wrapper stderr END ====
[2025-04-14 15:13:26]  *** Error codes and diagnostics ***
[2025-04-14 15:13:26]     "exeErrorCode": 0,
[2025-04-14 15:13:26]     "exeErrorDiag": "",
[2025-04-14 15:13:26]     "pilotErrorCode": 0,
[2025-04-14 15:13:26]     "pilotErrorDiag": "",
[2025-04-14 15:13:26]  *** Listing of results directory ***
[2025-04-14 15:13:26] total 412776
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas    495897 Apr 14 09:54 pilot3.tar.gz
[2025-04-14 15:13:26] -rwx------ 1 boincer umatlas     37140 Apr 14 10:05 runpilot2-wrapper.sh
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas      5111 Apr 14 10:05 queuedata.json
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas       100 Apr 14 13:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-14 15:13:26] -rwxr-xr-x 1 boincer umatlas      7986 Apr 14 13:53 run_atlas
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas       105 Apr 14 13:53 job.xml
[2025-04-14 15:13:26] -rw-r--r-- 2 boincer umatlas 224820651 Apr 14 13:53 EVNT.44075481._000695.pool.root.1
[2025-04-14 15:13:26] -rw-r--r-- 2 boincer umatlas     17569 Apr 14 13:53 start_atlas.sh
[2025-04-14 15:13:26] drwxrwx--x 2 boincer umatlas      4096 Apr 14 13:53 shared
[2025-04-14 15:13:26] -rw-r--r-- 2 boincer umatlas    508892 Apr 14 13:53 input.tar.gz
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas         0 Apr 14 13:53 boinc_lockfile
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas      2577 Apr 14 13:53 pandaJob.out
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas       424 Apr 14 13:53 setup.sh.local
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas    986083 Apr 14 13:54 agis_schedconf.cvmfs.json
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas   1603529 Apr 14 13:54 agis_ddmendpoints.agis.ALL.json
[2025-04-14 15:13:26] drwx------ 4 boincer umatlas      4096 Apr 14 13:54 pilot3
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas      5867 Apr 14 15:09 init_data.xml
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas 192373926 Apr 14 15:12 HITS.44075483._017580.pool.root.1
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas      8192 Apr 14 15:12 boinc_mmap_file
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas        27 Apr 14 15:12 wrapper_checkpoint.txt
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas      1048 Apr 14 15:12 memory_monitor_summary.json
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas       530 Apr 14 15:12 boinc_task_state.xml
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas    371016 Apr 14 15:12 log.44075483._017580.job.log.tgz.1
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas        95 Apr 14 15:13 pilot_heartbeat.json
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas      7752 Apr 14 15:13 heartbeat.json
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas      4864 Apr 14 15:13 pilotlog.txt
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas    452584 Apr 14 15:13 log.44075483._017580.job.log.1
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas       357 Apr 14 15:13 output.list
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas       620 Apr 14 15:13 runtime_log
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas    839680 Apr 14 15:13 result.tar.gz
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas       657 Apr 14 15:13 XgnMDmLcZO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmvP0KDmFrqLTn.diag
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas     11010 Apr 14 15:13 runtime_log.err
[2025-04-14 15:13:26] -rw-r--r-- 1 boincer umatlas     21664 Apr 14 15:13 stderr.txt
[2025-04-14 15:13:26] HITS file was successfully produced:
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas 192373926 Apr 14 15:12 shared/HITS.pool.root.1
[2025-04-14 15:13:26]  *** Contents of shared directory: ***
[2025-04-14 15:13:26] total 408768
[2025-04-14 15:13:26] -rw-r--r-- 2 boincer umatlas 224820651 Apr 14 13:53 ATLAS.root_0
[2025-04-14 15:13:26] -rw-r--r-- 2 boincer umatlas     17569 Apr 14 13:53 start_atlas.sh
[2025-04-14 15:13:26] -rw-r--r-- 2 boincer umatlas    508892 Apr 14 13:53 input.tar.gz
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas 192373926 Apr 14 15:12 HITS.pool.root.1
[2025-04-14 15:13:26] -rw------- 1 boincer umatlas    839680 Apr 14 15:13 result.tar.gz
15:13:27 (3913): run_atlas exited; CPU time 45188.022472
15:13:27 (3913): called boinc_finish(0)

</stderr_txt>
]]>

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