Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
14:56:37 (815054): wrapper (7.7.26015): starting
14:56:37 (815054): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 14:56:37] Arguments: --nthreads 12
[2025-04-16 14:56:37] Threads: 12
[2025-04-16 14:56:37] Checking for CVMFS
[2025-04-16 14:56:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 14:56:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 14:56:37] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 14:56:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 14:56:42] 2.12.7.0 1725662 13291 66508 144924 0 56 2369469 4096001 0 130560 0 8795645 99.990 2799603 192 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128 0
[2025-04-16 14:56:42] CVMFS is ok
[2025-04-16 14:56:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 14:56:42] Checking for apptainer binary...
[2025-04-16 14:56:42] apptainer is not installed, using version from CVMFS
[2025-04-16 14:56:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 14:56:43] lithium
[2025-04-16 14:56:43] apptainer works
[2025-04-16 14:56:43] Set ATHENA_PROC_NUMBER=12
[2025-04-16 14:56:43] Set ATHENA_CORE_NUMBER=12
[2025-04-16 14:56:43] Starting ATLAS job with PandaID=6602115187
[2025-04-16 14:56:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 16:39:25]  *** The last 200 lines of the pilot log: ***
[2025-04-16 16:39:25] 2025-04-16 14:39:05,825 | INFO     | -- intersect: -19711987138.12967
[2025-04-16 16:39:25] 2025-04-16 14:39:05,825 | INFO     | intersect: -19711987138.12967
[2025-04-16 16:39:25] 2025-04-16 14:39:05,825 | INFO     | chi2: 0.09437668262318243
[2025-04-16 16:39:25] 2025-04-16 14:39:05,826 | INFO     | current chi2=0.09437668262318243 (change=91.59881621307804 %)
[2025-04-16 16:39:25] 2025-04-16 14:39:05,826 | INFO     | sum of square deviations: 190403570.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,826 | INFO     | sum of deviations: -923514257.9999998
[2025-04-16 16:39:25] 2025-04-16 14:39:05,826 | INFO     | mean x: 1744811736.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,826 | INFO     | mean y: 2713610.9764705882
[2025-04-16 16:39:25] 2025-04-16 14:39:05,826 | INFO     | -- intersect: 8465572346.880066
[2025-04-16 16:39:25] 2025-04-16 14:39:05,826 | INFO     | intersect: 8465572346.880066
[2025-04-16 16:39:25] 2025-04-16 14:39:05,827 | INFO     | chi2: 0.028346144631156804
[2025-04-16 16:39:25] 2025-04-16 14:39:05,827 | INFO     | current chi2=0.028346144631156804 (change=69.9648855593554 %)
[2025-04-16 16:39:25] 2025-04-16 14:39:05,827 | INFO     | sum of square deviations: 158737860.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,827 | INFO     | sum of deviations: 191361819.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,827 | INFO     | mean x: 1744811888.5
[2025-04-16 16:39:25] 2025-04-16 14:39:05,827 | INFO     | mean y: 2708550.875
[2025-04-16 16:39:25] 2025-04-16 14:39:05,828 | INFO     | -- intersect: -2100698769.8245811
[2025-04-16 16:39:25] 2025-04-16 14:39:05,828 | INFO     | intersect: -2100698769.8245811
[2025-04-16 16:39:25] 2025-04-16 14:39:05,828 | INFO     | chi2: 0.0018732577951351176
[2025-04-16 16:39:25] 2025-04-16 14:39:05,828 | INFO     | current chi2=0.0018732577951351176 (change=93.39149002620935 %)
[2025-04-16 16:39:25] 2025-04-16 14:39:05,828 | INFO     | sum of square deviations: 130793150.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,828 | INFO     | sum of deviations: -199423884.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,828 | INFO     | mean x: 1744812041.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,829 | INFO     | mean y: 2710675.026666667
[2025-04-16 16:39:25] 2025-04-16 14:39:05,829 | INFO     | -- intersect: 2663073194.5178423
[2025-04-16 16:39:25] 2025-04-16 14:39:05,829 | INFO     | intersect: 2663073194.5178423
[2025-04-16 16:39:25] 2025-04-16 14:39:05,829 | INFO     | chi2: 0.0011026825126678422
[2025-04-16 16:39:25] 2025-04-16 14:39:05,829 | INFO     | current chi2=0.0011026825126678422 (change=41.13557058021979 %)
[2025-04-16 16:39:25] 2025-04-16 14:39:05,829 | INFO     | sum of square deviations: 106336877.5
[2025-04-16 16:39:25] 2025-04-16 14:39:05,829 | INFO     | sum of deviations: -442590441.00000006
[2025-04-16 16:39:25] 2025-04-16 14:39:05,830 | INFO     | mean x: 1744812193.5
[2025-04-16 16:39:25] 2025-04-16 14:39:05,830 | INFO     | mean y: 2712176.8571428573
[2025-04-16 16:39:25] 2025-04-16 14:39:05,830 | INFO     | -- intersect: 7264888914.963285
[2025-04-16 16:39:25] 2025-04-16 14:39:05,830 | INFO     | intersect: 7264888914.963285
[2025-04-16 16:39:25] 2025-04-16 14:39:05,830 | INFO     | chi2: 0.0005432779636241558
[2025-04-16 16:39:25] 2025-04-16 14:39:05,830 | INFO     | current chi2=0.0005432779636241558 (change=50.731243364897196 %)
[2025-04-16 16:39:25] 2025-04-16 14:39:05,830 | INFO     | sum of square deviations: 85136480.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | sum of deviations: -521704451.99999994
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | mean x: 1744812346.0
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | mean y: 2712738.446153846
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | -- intersect: 10694678965.059755
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | intersect: 10694678965.059755
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | chi2: 0.0003151713366980647
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | current chi2=0.0003151713366980647 (change=41.98709356890043 %)
[2025-04-16 16:39:25] 2025-04-16 14:39:05,831 | INFO     | left removable region not found
[2025-04-16 16:39:25] 2025-04-16 14:39:05,832 | INFO     | sum of square deviations: 257521107.5
[2025-04-16 16:39:25] 2025-04-16 14:39:05,832 | INFO     | sum of deviations: 40847611444.5
[2025-04-16 16:39:25] 2025-04-16 14:39:05,832 | INFO     | mean x: 1744811095.5
[2025-04-16 16:39:25] 2025-04-16 14:39:05,832 | INFO     | mean y: 2541214.904255319
[2025-04-16 16:39:25] 2025-04-16 14:39:05,832 | INFO     | -- intersect: -276756775195.83453
[2025-04-16 16:39:25] 2025-04-16 14:39:05,832 | INFO     | intersect: -276756775195.83453
[2025-04-16 16:39:25] 2025-04-16 14:39:05,832 | INFO     | chi2: 3.196814679304758
[2025-04-16 16:39:25] 2025-04-16 14:39:05,833 | INFO     | -- intersect: -276756775195.83453
[2025-04-16 16:39:25] 2025-04-16 14:39:05,833 | INFO     | current memory leak: 158.62 B/s (using 94 data points, chi2=3.20)
[2025-04-16 16:39:25] 2025-04-16 14:39:05,833 | INFO     | ..............................
[2025-04-16 16:39:25] 2025-04-16 14:39:05,833 | INFO     | . Timing measurements:
[2025-04-16 16:39:25] 2025-04-16 14:39:05,833 | INFO     | . get job = 0 s
[2025-04-16 16:39:25] 2025-04-16 14:39:05,833 | INFO     | . initial setup = 1 s
[2025-04-16 16:39:25] 2025-04-16 14:39:05,833 | INFO     | . payload setup = 4 s
[2025-04-16 16:39:25] 2025-04-16 14:39:05,834 | INFO     | . stage-in = 0 s
[2025-04-16 16:39:25] 2025-04-16 14:39:05,834 | INFO     | . payload execution = 6077 s
[2025-04-16 16:39:25] 2025-04-16 14:39:05,834 | INFO     | . stage-out = 0 s
[2025-04-16 16:39:25] 2025-04-16 14:39:05,834 | INFO     | . log creation = 0 s
[2025-04-16 16:39:25] 2025-04-16 14:39:05,834 | INFO     | ..............................
[2025-04-16 16:39:25] 2025-04-16 14:39:06,119 | INFO     | 
[2025-04-16 16:39:25] 2025-04-16 14:39:06,119 | INFO     | job summary report
[2025-04-16 16:39:25] 2025-04-16 14:39:06,119 | INFO     | --------------------------------------------------
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | PanDA job id: 6602115187
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | task id: 44075483
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | errors: (none)
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | pilot state: finished 
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | transexitcode: 0
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | exeerrorcode: 0
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | exeerrordiag: 
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | exitcode: 0
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | exitmsg: OK
[2025-04-16 16:39:25] 2025-04-16 14:39:06,120 | INFO     | cpuconsumptiontime: 60657 s
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | nevents: 400
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | neventsw: 0
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | pid: 825381
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | pgrp: 825381
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | corecount: 12
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | event service: False
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | sizes: {0: 2417200, 1: 2417399, 4: 2417605, 11: 2417633, 6085: 2444100, 6086: 2453238, 6089: 2453238, 6094: 2453408}
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | --------------------------------------------------
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | 
[2025-04-16 16:39:25] 2025-04-16 14:39:06,121 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-04-16 16:39:25] 2025-04-16 14:39:06,138 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,140 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,140 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,140 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 16:39:25] 2025-04-16 14:39:06,140 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,140 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 16:39:25] 2025-04-16 14:39:06,140 | INFO     | job 6602115187 has completed (purged errors)
[2025-04-16 16:39:25] 2025-04-16 14:39:06,140 | INFO     | overall cleanup function is called
[2025-04-16 16:39:25] 2025-04-16 14:39:07,147 | INFO     | --- collectZombieJob: --- 10, [825381]
[2025-04-16 16:39:25] 2025-04-16 14:39:07,148 | INFO     | zombie collector waiting for pid 825381
[2025-04-16 16:39:25] 2025-04-16 14:39:07,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 16:39:25] 2025-04-16 14:39:07,148 | INFO     | collected zombie processes
[2025-04-16 16:39:25] 2025-04-16 14:39:07,148 | INFO     | will attempt to kill all subprocesses of pid=825381
[2025-04-16 16:39:25] 2025-04-16 14:39:07,223 | INFO     | process IDs to be killed: [825381] (in reverse order)
[2025-04-16 16:39:25] 2025-04-16 14:39:07,266 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 16:39:25] 2025-04-16 14:39:07,266 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 16:39:25] 2025-04-16 14:39:07,268 | INFO     | did not find any defunct processes belonging to 825381
[2025-04-16 16:39:25] 2025-04-16 14:39:07,271 | INFO     | did not find any defunct processes belonging to 825381
[2025-04-16 16:39:25] 2025-04-16 14:39:07,271 | INFO     | ready for new job
[2025-04-16 16:39:25] 2025-04-16 14:39:07,271 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 16:39:25] 2025-04-16 14:39:07,272 | INFO     | **************************************
[2025-04-16 16:39:25] 2025-04-16 14:39:07,272 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 16:39:25] 2025-04-16 14:39:07,272 | INFO     | **************************************
[2025-04-16 16:39:25] 2025-04-16 14:39:07,272 | INFO     | 
[2025-04-16 16:39:25] 2025-04-16 14:39:07,291 | INFO     | architecture information:
[2025-04-16 16:39:25] 2025-04-16 14:39:07,291 | INFO     | executing command: cat /etc/os-release
[2025-04-16 16:39:25] 2025-04-16 14:39:07,301 | INFO     | cat /etc/os-release:
[2025-04-16 16:39:25] NAME="CentOS Linux"
[2025-04-16 16:39:25] VERSION="7 (Core)"
[2025-04-16 16:39:25] ID="centos"
[2025-04-16 16:39:25] ID_LIKE="rhel fedora"
[2025-04-16 16:39:25] VERSION_ID="7"
[2025-04-16 16:39:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 16:39:25] ANSI_COLOR="0;31"
[2025-04-16 16:39:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 16:39:25] HOME_URL="https://www.centos.org/"
[2025-04-16 16:39:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 16:39:25] 
[2025-04-16 16:39:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 16:39:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 16:39:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 16:39:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 16:39:25] 
[2025-04-16 16:39:25] 2025-04-16 14:39:07,301 | INFO     | **************************************
[2025-04-16 16:39:25] 2025-04-16 14:39:07,804 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-04-16 16:39:25] 2025-04-16 14:39:07,816 | INFO     | sufficient remaining disk space (32354861056 B)
[2025-04-16 16:39:25] 2025-04-16 14:39:07,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 16:39:25] 2025-04-16 14:39:07,817 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 16:39:25] 2025-04-16 14:39:07,817 | INFO     | update_server=False
[2025-04-16 16:39:25] 2025-04-16 14:39:07,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 16:39:25] 2025-04-16 14:39:07,817 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 16:39:25] 2025-04-16 14:39:07,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 16:39:25] 2025-04-16 14:39:07,818 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 16:39:25] 2025-04-16 14:39:07,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 16:39:25] 2025-04-16 14:39:07,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 16:39:25] 2025-04-16 14:39:07,990 | INFO     | all data control threads have been joined
[2025-04-16 16:39:25] 2025-04-16 14:39:08,224 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-16 16:39:25] 2025-04-16 14:39:08,224 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-16 16:39:25] 2025-04-16 14:39:08,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 16:39:25] 2025-04-16 14:39:08,225 | INFO     | will abort loop
[2025-04-16 16:39:25] 2025-04-16 14:39:08,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 16:39:25] 2025-04-16 14:39:08,684 | INFO     | all payload control threads have been joined
[2025-04-16 16:39:25] 2025-04-16 14:39:08,822 | INFO     | [job] retrieve thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:08,823 | INFO     | [job] queue monitor thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:08,869 | INFO     | [data] copytool_in thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:08,942 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:08,995 | INFO     | [data] control thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:09,005 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:09,039 | INFO     | [payload] failed_post thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:09,157 | INFO     | all job control threads have been joined
[2025-04-16 16:39:25] 2025-04-16 14:39:09,229 | INFO     | [job] job monitor thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:09,620 | INFO     | [payload] validate_post thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:09,690 | INFO     | [payload] control thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:10,155 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:10,163 | INFO     | [job] control thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:10,211 | INFO     | [job] validate thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:10,589 | INFO     | [data] copytool_out thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:11,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 16:39:25] 2025-04-16 14:39:15,265 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:18,201 | INFO     | job.realtimelogging is not enabled
[2025-04-16 16:39:25] 2025-04-16 14:39:19,207 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 16:39:25] 2025-04-16 14:39:20,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782760044352)>', '<ExcThread(monitor, started 139782176888576)>']
[2025-04-16 16:39:25] 2025-04-16 14:39:20,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 16:39:25] 2025-04-16 14:39:20,873 | INFO     | [monitor] control thread has ended
[2025-04-16 16:39:25] 2025-04-16 14:39:25,339 | INFO     | all workflow threads have been joined
[2025-04-16 16:39:25] 2025-04-16 14:39:25,339 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 16:39:25] 2025-04-16 14:39:25,340 | INFO     | traces error code: 0
[2025-04-16 16:39:25] 2025-04-16 14:39:25,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 16:39:25] 2025-04-16 14:39:25,421 [wrapper] ==== pilot stdout END ====
[2025-04-16 16:39:25] 2025-04-16 14:39:25,423 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 16:39:25] 2025-04-16 14:39:25,425 [wrapper] pilotpid: 818798
[2025-04-16 16:39:25] 2025-04-16 14:39:25,427 [wrapper] Pilot exit status: 0
[2025-04-16 16:39:25] 2025-04-16 14:39:25,434 [wrapper] pandaids: 6602115187
[2025-04-16 16:39:25] 2025-04-16 14:39:25,459 [wrapper] cleanup supervisor_pilot  837101 818799
[2025-04-16 16:39:25] 2025-04-16 14:39:25,462 [wrapper] Test setup, not cleaning
[2025-04-16 16:39:25] 2025-04-16 14:39:25,464 [wrapper] apfmon messages muted
[2025-04-16 16:39:25] 2025-04-16 14:39:25,466 [wrapper] ==== wrapper stdout END ====
[2025-04-16 16:39:25] 2025-04-16 14:39:25,468 [wrapper] ==== wrapper stderr END ====
[2025-04-16 16:39:25]  *** Error codes and diagnostics ***
[2025-04-16 16:39:25]     "exeErrorCode": 0,
[2025-04-16 16:39:25]     "exeErrorDiag": "",
[2025-04-16 16:39:25]     "pilotErrorCode": 0,
[2025-04-16 16:39:25]     "pilotErrorDiag": "",
[2025-04-16 16:39:25]  *** Listing of results directory ***
[2025-04-16 16:39:25] total 411160
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc    495897 Apr 14 05:48 pilot3.tar.gz
[2025-04-16 16:39:25] -rwx------ 1 boinc boinc     37140 Apr 14 05:58 runpilot2-wrapper.sh
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc      5111 Apr 14 05:58 queuedata.json
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc       100 Apr 16 14:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 16:39:25] -rwxr-xr-x 1 boinc boinc      7986 Apr 16 14:56 run_atlas
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc       105 Apr 16 14:56 job.xml
[2025-04-16 16:39:25] -rw-r--r-- 2 boinc boinc     17569 Apr 16 14:56 start_atlas.sh
[2025-04-16 16:39:25] drwxrwx--x 2 boinc boinc      4096 Apr 16 14:56 shared
[2025-04-16 16:39:25] -rw-r--r-- 2 boinc boinc    508898 Apr 16 14:56 input.tar.gz
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc      5970 Apr 16 14:56 init_data.xml
[2025-04-16 16:39:25] -rw-r--r-- 2 boinc boinc 223306904 Apr 16 14:56 EVNT.44075481._000494.pool.root.1
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc         0 Apr 16 14:56 boinc_lockfile
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc      2578 Apr 16 14:56 pandaJob.out
[2025-04-16 16:39:25] -rw------- 1 boinc boinc       424 Apr 16 14:56 setup.sh.local
[2025-04-16 16:39:25] -rw------- 1 boinc boinc    982907 Apr 16 14:57 agis_schedconf.cvmfs.json
[2025-04-16 16:39:25] -rw------- 1 boinc boinc   1603529 Apr 16 14:57 agis_ddmendpoints.agis.ALL.json
[2025-04-16 16:39:25] drwx------ 4 boinc boinc      4096 Apr 16 14:57 pilot3
[2025-04-16 16:39:25] -rw------- 1 boinc boinc        95 Apr 16 16:38 pilot_heartbeat.json
[2025-04-16 16:39:25] -rw------- 1 boinc boinc 192013314 Apr 16 16:38 HITS.44075483._012556.pool.root.1
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc       529 Apr 16 16:38 boinc_task_state.xml
[2025-04-16 16:39:25] -rw------- 1 boinc boinc      1060 Apr 16 16:38 memory_monitor_summary.json
[2025-04-16 16:39:25] -rw------- 1 boinc boinc    384279 Apr 16 16:38 log.44075483._012556.job.log.tgz.1
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc      8192 Apr 16 16:39 boinc_mmap_file
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc        27 Apr 16 16:39 wrapper_checkpoint.txt
[2025-04-16 16:39:25] -rw------- 1 boinc boinc      7727 Apr 16 16:39 heartbeat.json
[2025-04-16 16:39:25] -rw------- 1 boinc boinc      4741 Apr 16 16:39 pilotlog.txt
[2025-04-16 16:39:25] -rw------- 1 boinc boinc    547946 Apr 16 16:39 log.44075483._012556.job.log.1
[2025-04-16 16:39:25] -rw------- 1 boinc boinc       357 Apr 16 16:39 output.list
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc       620 Apr 16 16:39 runtime_log
[2025-04-16 16:39:25] -rw------- 1 boinc boinc    952320 Apr 16 16:39 result.tar.gz
[2025-04-16 16:39:25] -rw------- 1 boinc boinc       652 Apr 16 16:39 SgYNDmH9PO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmtRVLDmuX4omn.diag
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc     11098 Apr 16 16:39 runtime_log.err
[2025-04-16 16:39:25] -rw-r--r-- 1 boinc boinc     20580 Apr 16 16:39 stderr.txt
[2025-04-16 16:39:25] HITS file was successfully produced:
[2025-04-16 16:39:25] -rw------- 1 boinc boinc 192013314 Apr 16 16:38 shared/HITS.pool.root.1
[2025-04-16 16:39:25]  *** Contents of shared directory: ***
[2025-04-16 16:39:25] total 407052
[2025-04-16 16:39:25] -rw-r--r-- 2 boinc boinc     17569 Apr 16 14:56 start_atlas.sh
[2025-04-16 16:39:25] -rw-r--r-- 2 boinc boinc    508898 Apr 16 14:56 input.tar.gz
[2025-04-16 16:39:25] -rw-r--r-- 2 boinc boinc 223306904 Apr 16 14:56 ATLAS.root_0
[2025-04-16 16:39:25] -rw------- 1 boinc boinc 192013314 Apr 16 16:38 HITS.pool.root.1
[2025-04-16 16:39:25] -rw------- 1 boinc boinc    952320 Apr 16 16:39 result.tar.gz
16:39:27 (815054): run_atlas exited; CPU time 60531.890467
16:39:27 (815054): called boinc_finish(0)

</stderr_txt>
]]>

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