Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 20:28:00 (6148): Detected: vboxwrapper 26206
2025-04-14 20:28:00 (6148): Detected: BOINC client v8.0.4
2025-04-14 20:28:01 (6148): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-14 20:28:01 (6148): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 20:28:01 (6148): Create VM. (boinc_5887cf1457765222, slot#1)
2025-04-14 20:28:02 (6148): Setting Memory Size for VM. (4800MB)
2025-04-14 20:28:02 (6148): Setting CPU Count for VM. (8)
2025-04-14 20:28:02 (6148): Setting Chipset Options for VM.
2025-04-14 20:28:03 (6148): Setting Graphics Controller Options for VM.
2025-04-14 20:28:03 (6148): Setting Boot Options for VM.
2025-04-14 20:28:03 (6148): Setting Network Configuration for NAT.
2025-04-14 20:28:04 (6148): Enabling VM Network Access.
2025-04-14 20:28:04 (6148): Disabling USB Support for VM.
2025-04-14 20:28:04 (6148): Disabling COM Port Support for VM.
2025-04-14 20:28:04 (6148): Disabling LPT Port Support for VM.
2025-04-14 20:28:05 (6148): Disabling Audio Support for VM.
2025-04-14 20:28:05 (6148): Disabling Clipboard Support for VM.
2025-04-14 20:28:05 (6148): Disabling Drag and Drop Support for VM.
2025-04-14 20:28:05 (6148): Adding storage controller(s) to VM.
2025-04-14 20:28:06 (6148): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 20:28:09 (6148): Adding VirtualBox Guest Additions to VM.
2025-04-14 20:28:09 (6148): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 20:28:09 (6148): forwarding host port 62131 to guest port 80
2025-04-14 20:28:09 (6148): Enabling remote desktop for VM.
2025-04-14 20:28:10 (6148): Required extension pack not installed, remote desktop not enabled.
2025-04-14 20:28:10 (6148): Enabling shared directory for VM.
2025-04-14 20:28:10 (6148): Starting VM using VBoxManage interface. (boinc_5887cf1457765222, slot#1)
2025-04-14 20:28:15 (6148): Successfully started VM. (PID = '21828')
2025-04-14 20:28:15 (6148): Reporting VM Process ID to BOINC.
2025-04-14 20:28:15 (6148): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-14 20:28:15 (6148): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 20:28:15 (6148): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 20:28:15 (6148): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 20:28:15 (6148): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 20:28:15 (6148): Detected: Web Application Enabled (http://localhost:62131)
2025-04-14 20:28:16 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:28:22 (6148): Preference change detected
2025-04-14 20:28:22 (6148): Setting CPU throttle for VM. (100%)
2025-04-14 20:28:22 (6148): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 20:28:23 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:28:24 (6148): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 20:28:24 (6148): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 20:28:27 (6148): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 20:28:27 (6148): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 20:28:27 (6148): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 20:28:32 (6148): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 20:28:32 (6148): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 20:28:37 (6148): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.000167 main     Log opened 2025-04-14T20:28:28.824634000Z
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.000327 main     OS Product: Linux
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.000386 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.000416 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.000443 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.000444 main     Process ID: 1366
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.000445 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 20:28:37 (6148): Guest Log: 00:00:00.001175 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 20:28:37 (6148): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 20:28:37 (6148): Guest Log: [INFO] Mounting shared directory
2025-04-14 20:28:37 (6148): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 20:28:39 (6148): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 20:28:39 (6148): Guest Log: [INFO] Detected branch: prod
2025-04-14 20:28:39 (6148): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 20:28:39 (6148): Guest Log: Copying input files
2025-04-14 20:28:40 (6148): Guest Log: Copied input files into RunAtlas.
2025-04-14 20:28:40 (6148): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 20:28:40 (6148): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 20:28:40 (6148): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 20:28:40 (6148): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 20:28:47 (6148): Guest Log: 00:00:10.016634 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 417 847 761 000ns (GuestNow=1 744 676 926 674 912 000 ns GuestLast=1 744 662 508 827 151 000 ns fSetTimeLastLoop=true )
2025-04-14 20:28:48 (6148): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 20:28:49 (6148): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 20:28:49 (6148): Guest Log: 2.6.3.0 1644 0 32196 144869 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 20:28:49 (6148): Guest Log: copied the webapp to /var/www
2025-04-14 20:28:49 (6148): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-14 20:28:49 (6148): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-14 20:28:49 (6148): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 20:28:49 (6148): Guest Log:  *** Starting ATLAS job. (PandaID=6602128745 taskID=44075483) ***
2025-04-14 20:50:35 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:50:55 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:53:54 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:54:14 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 21:07:35 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 21:07:55 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 21:22:37 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 21:22:57 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 21:46:37 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 21:46:57 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 22:03:19 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 22:03:39 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 22:10:42 (6148): Status Report: Elapsed Time: '6000.000000'
2025-04-14 22:10:42 (6148): Status Report: CPU Time: '22940.718750'
2025-04-14 22:33:31 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 22:33:51 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 22:52:42 (6148): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 22:53:02 (6148): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 22:53:47 (6148): Guest Log:  *** Job finished ***
2025-04-14 22:53:47 (6148): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:50:59,470 | INFO     | [payload] execute_payloads thread has finished
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:00,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:04,288 | INFO     | [data] queue_monitor thread has finished
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:04,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979062945600)>', '<ExcThread(monitor, started 139978436744960)>']
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:04,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:04,967 | INFO     | [monitor] control thread has ended
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,654 | INFO     | all workflow threads have been joined
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,654 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,654 | INFO     | traces error code: 0
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,736 [wrapper] ==== pilot stdout END ====
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,743 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,749 [wrapper] pilotpid: 6002
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,756 [wrapper] Pilot exit status: 0
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,830 [wrapper] pandaids: 6602128745
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,881 [wrapper] cleanup supervisor_pilot  5368 6003
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,888 [wrapper] Test setup, not cleaning
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,895 [wrapper] apfmon messages muted
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,901 [wrapper] ==== wrapper stdout END ====
2025-04-14 22:53:47 (6148): Guest Log: 2025-04-15 02:51:09,908 [wrapper] ==== wrapper stderr END ====
2025-04-14 22:53:47 (6148): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 22:53:47 (6148): Guest Log:     "exeErrorCode": 0,
2025-04-14 22:53:47 (6148): Guest Log:     "exeErrorDiag": "",
2025-04-14 22:53:47 (6148): Guest Log:     "pilotErrorCode": 0,
2025-04-14 22:53:47 (6148): Guest Log:     "pilotErrorDiag": "",
2025-04-14 22:53:47 (6148): Guest Log:  *** Listing of results directory ***
2025-04-14 22:53:47 (6148): Guest Log: total 198592
2025-04-14 22:53:47 (6148): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 13:27 pilot3.tar.gz
2025-04-14 22:53:47 (6148): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 13:36 runpilot2-wrapper.sh
2025-04-14 22:53:47 (6148): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 13:36 queuedata.json
2025-04-14 22:53:47 (6148): Guest Log: -rwxr-xr-x. 1 atlas atlas     12032 Apr 15 00:28 init_data.xml
2025-04-14 22:53:47 (6148): Guest Log: -rwxr-xr-x. 1 atlas atlas    508888 Apr 15 00:28 input.tar.gz
2025-04-14 22:53:47 (6148): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 15 00:28 start_atlas.sh
2025-04-14 22:53:47 (6148): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 15 00:28 EVNT.44075481._000686.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 22:53:47 (6148): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 15 00:28 pandaJob.out
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas       424 Apr 15 00:28 setup.sh.local
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas    983985 Apr 15 00:29 agis_schedconf.cvmfs.json
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 00:29 agis_ddmendpoints.agis.ALL.json
2025-04-14 22:53:47 (6148): Guest Log: drwx------. 4 atlas atlas      4096 Apr 15 00:29 pilot3
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas        95 Apr 15 02:50 pilot_heartbeat.json
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas 197510853 Apr 15 02:50 HITS.44075483._017347.pool.root.1
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas      1029 Apr 15 02:50 memory_monitor_summary.json
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas    328405 Apr 15 02:50 log.44075483._017347.job.log.tgz.1
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas      7714 Apr 15 02:50 heartbeat.json
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 15 02:51 pilotlog.txt
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas    707750 Apr 15 02:51 log.44075483._017347.job.log.1
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 02:51 output.list
2025-04-14 22:53:47 (6148): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 02:51 runtime_log
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas   1054720 Apr 15 02:51 result.tar.gz
2025-04-14 22:53:47 (6148): Guest Log: -rw-r--r--. 1 atlas atlas     10977 Apr 15 02:51 runtime_log.err
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas       668 Apr 15 02:51 2AjKDmLAZO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4O0KDmBITjTn.diag
2025-04-14 22:53:47 (6148): Guest Log: Looking for outputfile HITS.44075483._017347.pool.root.1
2025-04-14 22:53:47 (6148): Guest Log: HITS file was successfully produced
2025-04-14 22:53:47 (6148): Guest Log: -rw-------. 1 atlas atlas 197510853 Apr 15 02:50 /home/atlas/RunAtlas/HITS.44075483._017347.pool.root.1
2025-04-14 22:53:48 (6148): Guest Log: Successfully finished the ATLAS job!
2025-04-14 22:53:48 (6148): Guest Log: Copying the results back to the shared directory!
2025-04-14 22:53:48 (6148): Guest Log:  *** Contents of shared directory: ***
2025-04-14 22:53:48 (6148): Guest Log: total 413100
2025-04-14 22:53:48 (6148): Guest Log: -rwxrwxrwx. 1 root root 223897465 Apr 15 00:28 ATLAS.root_0
2025-04-14 22:53:48 (6148): Guest Log: -rwxrwxrwx. 1 root root 197510853 Apr 15  2025 HITS.pool.root.1
2025-04-14 22:53:48 (6148): Guest Log: -rwxrwxrwx. 1 root root     12032 Apr 15 00:28 init_data.xml
2025-04-14 22:53:48 (6148): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 14 17:40 input.tar.gz
2025-04-14 22:53:48 (6148): Guest Log: -rwxrwxrwx. 1 root root   1054720 Apr 15  2025 result.tar.gz
2025-04-14 22:53:48 (6148): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 17:40 start_atlas.sh
2025-04-14 22:53:48 (6148): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 22:53:48 (6148): VM Completion File Detected.
2025-04-14 22:53:48 (6148): Powering off VM.
2025-04-14 22:53:48 (6148): Successfully stopped VM.
2025-04-14 22:53:48 (6148): Deregistering VM. (boinc_5887cf1457765222, slot#1)
2025-04-14 22:53:48 (6148): Removing network bandwidth throttle group from VM.
2025-04-14 22:53:49 (6148): Removing VM from VirtualBox.
22:53:54 (6148): called boinc_finish(0)

</stderr_txt>
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