Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 19:00:00 (7624): Detected: vboxwrapper 26206
2025-04-14 19:00:00 (7624): Detected: BOINC client v8.0.2
2025-04-14 19:00:01 (7624): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-14 19:00:01 (7624): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 19:00:02 (7624): Create VM. (boinc_2276cb6c9c851d12, slot#0)
2025-04-14 19:00:02 (7624): Setting Memory Size for VM. (4200MB)
2025-04-14 19:00:03 (7624): Setting CPU Count for VM. (2)
2025-04-14 19:00:03 (7624): Setting Chipset Options for VM.
2025-04-14 19:00:03 (7624): Setting Graphics Controller Options for VM.
2025-04-14 19:00:04 (7624): Setting Boot Options for VM.
2025-04-14 19:00:04 (7624): Setting Network Configuration for NAT.
2025-04-14 19:00:04 (7624): Enabling VM Network Access.
2025-04-14 19:00:05 (7624): Disabling USB Support for VM.
2025-04-14 19:00:05 (7624): Disabling COM Port Support for VM.
2025-04-14 19:00:05 (7624): Disabling LPT Port Support for VM.
2025-04-14 19:00:05 (7624): Disabling Audio Support for VM.
2025-04-14 19:00:06 (7624): Disabling Clipboard Support for VM.
2025-04-14 19:00:06 (7624): Disabling Drag and Drop Support for VM.
2025-04-14 19:00:06 (7624): Adding storage controller(s) to VM.
2025-04-14 19:00:07 (7624): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 19:00:10 (7624): Adding VirtualBox Guest Additions to VM.
2025-04-14 19:00:11 (7624): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 19:00:11 (7624): forwarding host port 64123 to guest port 80
2025-04-14 19:00:11 (7624): Enabling remote desktop for VM.
2025-04-14 19:00:12 (7624): Enabling shared directory for VM.
2025-04-14 19:00:13 (7624): Starting VM using VBoxManage interface. (boinc_2276cb6c9c851d12, slot#0)
2025-04-14 19:00:22 (7624): Successfully started VM. (PID = '4396')
2025-04-14 19:00:22 (7624): Reporting VM Process ID to BOINC.
2025-04-14 19:00:22 (7624): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-14 19:00:22 (7624): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 19:00:22 (7624): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 19:00:22 (7624): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 19:00:22 (7624): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 19:00:22 (7624): Detected: Web Application Enabled (http://localhost:64123)
2025-04-14 19:00:22 (7624): Detected: Remote Desktop Enabled (localhost:64124)
2025-04-14 19:00:22 (7624): Preference change detected
2025-04-14 19:00:22 (7624): Setting CPU throttle for VM. (80%)
2025-04-14 19:00:23 (7624): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 19:00:24 (7624): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 19:00:24 (7624): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 19:00:35 (7624): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 19:00:35 (7624): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 19:00:35 (7624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 19:01:06 (7624): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 19:01:06 (7624): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 19:01:11 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:01:31 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:02:01 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:02:21 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:02:53 (7624): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.000191 main     Log opened 2025-04-14T19:02:12.250742000Z
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.000434 main     OS Product: Linux
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.000482 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.000525 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.000568 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.000569 main     Process ID: 1257
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.000570 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 19:02:53 (7624): Guest Log: 00:00:00.054555 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 19:02:54 (7624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 19:02:54 (7624): Guest Log: [INFO] Mounting shared directory
2025-04-14 19:02:54 (7624): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 19:03:01 (7624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 19:03:01 (7624): Guest Log: [INFO] Detected branch: prod
2025-04-14 19:03:02 (7624): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 19:03:02 (7624): Guest Log: Copying input files
2025-04-14 19:03:04 (7624): Guest Log: 00:00:10.122419 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 548 966 675 000ns (GuestNow=1 744 653 783 347 118 000 ns GuestLast=1 744 657 332 313 793 000 ns fSetTimeLastLoop=true )
2025-04-14 19:03:07 (7624): Guest Log: Copied input files into RunAtlas.
2025-04-14 19:03:07 (7624): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 19:03:07 (7624): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 19:03:07 (7624): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 19:03:07 (7624): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 19:03:20 (7624): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 19:03:21 (7624): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 19:03:21 (7624): Guest Log: 2.6.3.0 1528 0 32192 144858 3 1 3119946 4096000 0 65024 0 0 n/a 1171 467 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 19:03:31 (7624): Guest Log: copied the webapp to /var/www
2025-04-14 19:03:31 (7624): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-14 19:03:31 (7624): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-14 19:03:33 (7624): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 19:03:33 (7624): Guest Log:  *** Starting ATLAS job. (PandaID=6602128504 taskID=44075483) ***
2025-04-14 19:03:42 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:04:02 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:06:22 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:06:42 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:07:33 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:07:52 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:08:02 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:08:22 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:08:32 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:08:52 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:09:03 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:09:22 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:09:32 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:09:52 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:10:12 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:10:33 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:10:42 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:11:02 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:11:23 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:11:43 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:11:52 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:12:12 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:12:32 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:12:53 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:17:03 (7624): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:17:23 (7624): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 19:21:32 (7624): Guest Log:  *** Job finished ***
2025-04-14 19:21:32 (7624): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:09,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:09,535 | INFO     | [job] queue monitor thread has finished
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:13,018 | INFO     | [data] queue_monitor thread has finished
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:13,724 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875073832768)>', '<ExcThread(monitor, started 139874107639552)>']
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:14,216 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:14,216 | INFO     | [monitor] control thread has ended
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:18,885 | INFO     | all workflow threads have been joined
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:18,885 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:18,886 | INFO     | traces error code: 0
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:18,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,120 [wrapper] ==== pilot stdout END ====
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,136 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,154 [wrapper] pilotpid: 5836
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,169 [wrapper] Pilot exit status: 0
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,275 [wrapper] pandaids: 6602128504
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,351 [wrapper] cleanup supervisor_pilot  5843 5837
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,365 [wrapper] Test setup, not cleaning
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,401 [wrapper] apfmon messages muted
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,412 [wrapper] ==== wrapper stdout END ====
2025-04-14 19:21:32 (7624): Guest Log: 2025-04-14 18:17:19,422 [wrapper] ==== wrapper stderr END ====
2025-04-14 19:21:32 (7624): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 19:21:32 (7624): Guest Log:     "exeErrorCode": 65,
2025-04-14 19:21:32 (7624): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-04-14 19:21:32 (7624): Guest Log:     "pilotErrorCode": 1305,
2025-04-14 19:21:32 (7624): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-04-14 19:21:32 (7624): Guest Log:  *** Listing of results directory ***
2025-04-14 19:21:32 (7624): Guest Log: total 4196
2025-04-14 19:21:32 (7624): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 14 13:11 pilot3.tar.gz
2025-04-14 19:21:32 (7624): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 14 13:25 queuedata.json
2025-04-14 19:21:32 (7624): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 14 13:26 runpilot2-wrapper.sh
2025-04-14 19:21:32 (7624): Guest Log: -rwxr-xr-x. 1 atlas atlas    6095 Apr 14 18:03 init_data.xml
2025-04-14 19:21:32 (7624): Guest Log: -rwxr-xr-x. 1 atlas atlas  508897 Apr 14 18:03 input.tar.gz
2025-04-14 19:21:32 (7624): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 14 18:03 start_atlas.sh
2025-04-14 19:21:32 (7624): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 14 18:03 EVNT.44075481._000682.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 19:21:32 (7624): Guest Log: -rw-r--r--. 1 atlas atlas    2577 Apr 14 18:03 pandaJob.out
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas     424 Apr 14 18:03 setup.sh.local
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas  986083 Apr 14 18:05 agis_schedconf.cvmfs.json
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas 1603529 Apr 14 18:05 agis_ddmendpoints.agis.ALL.json
2025-04-14 19:21:32 (7624): Guest Log: drwx------. 4 atlas atlas    4096 Apr 14 18:05 pilot3
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas   52676 Apr 14 18:14 log.44075483._017256.job.log.tgz.1
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas      95 Apr 14 18:16 pilot_heartbeat.json
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas    8076 Apr 14 18:17 heartbeat.json
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas    4413 Apr 14 18:17 pilotlog.txt
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas  216740 Apr 14 18:17 log.44075483._017256.job.log.1
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas     188 Apr 14 18:17 output.list
2025-04-14 19:21:32 (7624): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 14 18:17 runtime_log
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas  286720 Apr 14 18:17 result.tar.gz
2025-04-14 19:21:32 (7624): Guest Log: -rw-r--r--. 1 atlas atlas   10772 Apr 14 18:17 runtime_log.err
2025-04-14 19:21:32 (7624): Guest Log: -rw-------. 1 atlas atlas     642 Apr 14 18:17 goyMDmE0YO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmDIWLDmPtfbVo.diag
2025-04-14 19:21:32 (7624): Guest Log: Looking for outputfile HITS.44075483._017256.pool.root.1
2025-04-14 19:21:32 (7624): Guest Log: No HITS file was produced
2025-04-14 19:21:32 (7624): Guest Log: Successfully finished the ATLAS job!
2025-04-14 19:21:32 (7624): Guest Log: Copying the results back to the shared directory!
2025-04-14 19:21:33 (7624): Guest Log:  *** Contents of shared directory: ***
2025-04-14 19:21:33 (7624): Guest Log: total 218484
2025-04-14 19:21:33 (7624): Guest Log: -rwxrwxrwx. 1 root root 222899247 Apr 14 18:00 ATLAS.root_0
2025-04-14 19:21:33 (7624): Guest Log: -rwxrwxrwx. 1 root root      6095 Apr 14 18:00 init_data.xml
2025-04-14 19:21:33 (7624): Guest Log: -rwxrwxrwx. 1 root root    508897 Apr 14 17:35 input.tar.gz
2025-04-14 19:21:33 (7624): Guest Log: -rwxrwxrwx. 1 root root    286720 Apr 14  2025 result.tar.gz
2025-04-14 19:21:33 (7624): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 17:35 start_atlas.sh
2025-04-14 19:21:33 (7624): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 19:21:33 (7624): VM Completion File Detected.
2025-04-14 19:21:33 (7624): Powering off VM.
2025-04-14 19:21:34 (7624): Successfully stopped VM.
2025-04-14 19:21:34 (7624): Deregistering VM. (boinc_2276cb6c9c851d12, slot#0)
2025-04-14 19:21:34 (7624): Removing network bandwidth throttle group from VM.
2025-04-14 19:21:35 (7624): Removing VM from VirtualBox.
19:21:40 (7624): called boinc_finish(0)

</stderr_txt>
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