Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:55:54 (41784): wrapper (7.7.26015): starting
09:55:54 (41784): wrapper: running run_atlas (--nthreads 8)
[2025-04-14 09:55:54] Arguments: --nthreads 8
[2025-04-14 09:55:54] Threads: 8
[2025-04-14 09:55:54] Checking for CVMFS
[2025-04-14 09:55:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-14 09:55:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-14 09:55:57] Running cvmfs_config stat atlas.cern.ch
[2025-04-14 09:56:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-14 09:56:01] 2.11.2.0 44558 35378 387652 144850 0 172 9221731 18432000 13356 130560 0 147971602 98.949 356198834 36404 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-14 09:56:01] CVMFS is ok
[2025-04-14 09:56:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-14 09:56:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-14 09:56:01] Further information can be found at the LHC@home message board.
[2025-04-14 09:56:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-14 09:56:01] Checking for apptainer binary...
[2025-04-14 09:56:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-14 09:56:01] Running /usr/bin/apptainer --version
[2025-04-14 09:56:01] apptainer version 1.3.2-1.el7
[2025-04-14 09:56:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-14 09:56:43] c-211-12.aglt2.org
[2025-04-14 09:56:43] apptainer works
[2025-04-14 09:56:43] Set ATHENA_PROC_NUMBER=8
[2025-04-14 09:56:43] Set ATHENA_CORE_NUMBER=8
[2025-04-14 09:56:44] Starting ATLAS job with PandaID=6602100877
[2025-04-14 09:56:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:00:08 (41784): BOINC client no longer exists - exiting
22:00:08 (41784): timer handler: client dead, exiting
22:12:15 (17621): wrapper (7.7.26015): starting
22:12:15 (17621): wrapper: running run_atlas (--nthreads 8)
[2025-04-14 22:12:15] Arguments: --nthreads 8
[2025-04-14 22:12:15] Threads: 8
[2025-04-14 22:12:15] This job has been restarted, cleaning up previous attempt
[2025-04-14 22:12:16] Checking for CVMFS
[2025-04-14 22:12:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-14 22:12:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-14 22:12:18] Running cvmfs_config stat atlas.cern.ch
[2025-04-14 22:12:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-14 22:12:19] 2.11.2.0 44558 36114 387924 144871 1 127 12554824 18432001 16917 130560 0 151147930 98.948 364580847 36301 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-14 22:12:19] CVMFS is ok
[2025-04-14 22:12:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-14 22:12:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-14 22:12:20] Further information can be found at the LHC@home message board.
[2025-04-14 22:12:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-14 22:12:20] Checking for apptainer binary...
[2025-04-14 22:12:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-14 22:12:20] Running /usr/bin/apptainer --version
[2025-04-14 22:12:20] apptainer version 1.3.2-1.el7
[2025-04-14 22:12:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-14 22:12:45] c-211-12.aglt2.org
[2025-04-14 22:12:45] apptainer works
[2025-04-14 22:12:46] Set ATHENA_PROC_NUMBER=8
[2025-04-14 22:12:46] Set ATHENA_CORE_NUMBER=8
[2025-04-14 22:12:46] Starting ATLAS job with PandaID=6602100877
[2025-04-14 22:12:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 02:18:29]  *** The last 200 lines of the pilot log: ***
[2025-04-16 02:18:29] 2025-04-16 06:17:41,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 02:18:29] 2025-04-16 06:17:43,911 | INFO     | monitor loop #4129: job 0:6602100877 is in state 'finished'
[2025-04-16 02:18:29] 2025-04-16 06:17:43,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 02:18:29] 2025-04-16 06:17:46,416 | INFO     | monitor loop #4130: job 0:6602100877 is in state 'finished'
[2025-04-16 02:18:29] 2025-04-16 06:17:46,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 02:18:29] 2025-04-16 06:17:48,942 | INFO     | monitor loop #4131: job 0:6602100877 is in state 'finished'
[2025-04-16 02:18:29] 2025-04-16 06:17:48,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 02:18:29] 2025-04-16 06:17:51,491 | INFO     | monitor loop #4132: job 0:6602100877 is in state 'finished'
[2025-04-16 02:18:29] 2025-04-16 06:17:51,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 02:18:29] 2025-04-16 06:17:53,652 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-16 02:18:29] 2025-04-16 06:17:53,652 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6602100877/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 02:18:29] 2025-04-16 06:17:53,664 | INFO     | extracted standard info from prmon json
[2025-04-16 02:18:29] 2025-04-16 06:17:53,665 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 02:18:29] 2025-04-16 06:17:53,665 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 02:18:29] 2025-04-16 06:17:53,672 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 02:18:29] 2025-04-16 06:17:53,672 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 02:18:29] 2025-04-16 06:17:53,987 | INFO     | fitting pss+swap vs Time
[2025-04-16 02:18:29] 2025-04-16 06:17:54,100 | INFO     | sum of square deviations: 1385343643450.1104
[2025-04-16 02:18:29] 2025-04-16 06:17:54,121 | INFO     | monitor loop #4133: job 0:6602100877 is in state 'finished'
[2025-04-16 02:18:29] 2025-04-16 06:17:54,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 02:18:29] 2025-04-16 06:17:54,616 | INFO     | sum of deviations: 2923135134214.901
[2025-04-16 02:18:29] 2025-04-16 06:17:54,616 | INFO     | mean x: 1744733922.2641165
[2025-04-16 02:18:29] 2025-04-16 06:17:54,616 | INFO     | mean y: 2447381.2622950817
[2025-04-16 02:18:29] 2025-04-16 06:17:54,617 | INFO     | -- intersect: -3679016818.7143626
[2025-04-16 02:18:29] 2025-04-16 06:17:54,617 | INFO     | intersect: -3679016818.7143626
[2025-04-16 02:18:29] 2025-04-16 06:17:54,640 | INFO     | chi2: 21.207396721941
[2025-04-16 02:18:29] 2025-04-16 06:17:54,646 | INFO     | sum of square deviations: 1372765421331.1226
[2025-04-16 02:18:29] 2025-04-16 06:17:55,196 | INFO     | sum of deviations: 3465007118480.987
[2025-04-16 02:18:29] 2025-04-16 06:17:55,196 | INFO     | mean x: 1744733769.7673569
[2025-04-16 02:18:29] 2025-04-16 06:17:55,196 | INFO     | mean y: 2453950.876979294
[2025-04-16 02:18:29] 2025-04-16 06:17:55,196 | INFO     | -- intersect: -4401441163.436095
[2025-04-16 02:18:29] 2025-04-16 06:17:55,197 | INFO     | intersect: -4401441163.436095
[2025-04-16 02:18:29] 2025-04-16 06:17:55,212 | INFO     | chi2: 17.309054895913977
[2025-04-16 02:18:29] 2025-04-16 06:17:55,212 | INFO     | current chi2=17.309054895913977 (change=18.381991326610255 %)
[2025-04-16 02:18:29] 2025-04-16 06:17:55,212 | INFO     | right removable region: 1641
[2025-04-16 02:18:29] 2025-04-16 06:17:55,249 | INFO     | sum of square deviations: 1372764251654.5947
[2025-04-16 02:18:29] 2025-04-16 06:17:55,465 | INFO     | sum of deviations: 2332282357428.4253
[2025-04-16 02:18:29] 2025-04-16 06:17:55,465 | INFO     | mean x: 1744734074.7679658
[2025-04-16 02:18:29] 2025-04-16 06:17:55,465 | INFO     | mean y: 2454543.9092570036
[2025-04-16 02:18:29] 2025-04-16 06:17:55,465 | INFO     | -- intersect: -2961792591.8104463
[2025-04-16 02:18:29] 2025-04-16 06:17:55,466 | INFO     | intersect: -2961792591.8104463
[2025-04-16 02:18:29] 2025-04-16 06:17:55,468 | INFO     | chi2: 16.410765456002046
[2025-04-16 02:18:29] 2025-04-16 06:17:55,468 | INFO     | current chi2=16.410765456002046 (change=22.61772780897901 %)
[2025-04-16 02:18:29] 2025-04-16 06:17:55,468 | INFO     | left removable region: 10
[2025-04-16 02:18:29] 2025-04-16 06:17:55,471 | INFO     | sum of square deviations: 1345359521293.8438
[2025-04-16 02:18:29] 2025-04-16 06:17:56,323 | INFO     | sum of deviations: 2472953403474.0244
[2025-04-16 02:18:29] 2025-04-16 06:17:56,323 | INFO     | mean x: 1744734044.2759044
[2025-04-16 02:18:29] 2025-04-16 06:17:56,324 | INFO     | mean y: 2468750.715511956
[2025-04-16 02:18:29] 2025-04-16 06:17:56,324 | INFO     | -- intersect: -3204589232.4172535
[2025-04-16 02:18:29] 2025-04-16 06:17:56,324 | INFO     | intersect: -3204589232.4172535
[2025-04-16 02:18:29] 2025-04-16 06:17:56,326 | INFO     | chi2: 8.170446470752163
[2025-04-16 02:18:29] 2025-04-16 06:17:56,326 | INFO     | -- intersect: -3204589232.4172535
[2025-04-16 02:18:29] 2025-04-16 06:17:56,327 | INFO     | current memory leak: 1.84 B/s (using 1631 data points, chi2=8.17)
[2025-04-16 02:18:29] 2025-04-16 06:17:56,328 | INFO     | ..............................
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . Timing measurements:
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . get job = 1 s
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . initial setup = 11 s
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . payload setup = 127 s
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . stage-in = 0 s
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . payload execution = 100547 s
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . stage-out = 19 s
[2025-04-16 02:18:29] 2025-04-16 06:17:56,329 | INFO     | . log creation = 7 s
[2025-04-16 02:18:29] 2025-04-16 06:17:56,330 | INFO     | ..............................
[2025-04-16 02:18:29] 2025-04-16 06:17:57,510 | INFO     | 
[2025-04-16 02:18:29] 2025-04-16 06:17:57,510 | INFO     | job summary report
[2025-04-16 02:18:29] 2025-04-16 06:17:57,510 | INFO     | --------------------------------------------------
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | PanDA job id: 6602100877
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | task id: 44075483
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | errors: (none)
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | pilot state: finished 
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | transexitcode: 0
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | exeerrorcode: 0
[2025-04-16 02:18:29] 2025-04-16 06:17:57,511 | INFO     | exeerrordiag: 
[2025-04-16 02:18:29] 2025-04-16 06:17:57,512 | INFO     | exitcode: 0
[2025-04-16 02:18:29] 2025-04-16 06:17:57,512 | INFO     | exitmsg: OK
[2025-04-16 02:18:29] 2025-04-16 06:17:57,512 | INFO     | cpuconsumptiontime: 62590 s
[2025-04-16 02:18:29] 2025-04-16 06:17:57,525 | INFO     | nevents: 400
[2025-04-16 02:18:29] 2025-04-16 06:17:57,525 | INFO     | neventsw: 0
[2025-04-16 02:18:29] 2025-04-16 06:17:57,525 | INFO     | pid: 22874
[2025-04-16 02:18:29] 2025-04-16 06:17:57,526 | INFO     | pgrp: 22874
[2025-04-16 02:18:29] 2025-04-16 06:17:57,526 | INFO     | corecount: 8
[2025-04-16 02:18:29] 2025-04-16 06:17:57,526 | INFO     | event service: False
[2025-04-16 02:18:29] 2025-04-16 06:17:57,526 | INFO     | sizes: {0: 2417132, 1: 2417188, 2: 2417244, 3: 2417415, 4: 2417443, 15: 2417471, 27: 2417627, 38: 2417655, 50: 2417683, 62: 2417711, 71: 2417945, 74: 2418253, 1006
[2025-04-16 02:18:29] 2025-04-16 06:17:57,526 | INFO     | --------------------------------------------------
[2025-04-16 02:18:29] 2025-04-16 06:17:57,526 | INFO     | 
[2025-04-16 02:18:29] 2025-04-16 06:17:57,526 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-16 02:18:29] 2025-04-16 06:17:57,795 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,808 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,808 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,808 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,822 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,822 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,823 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,823 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,823 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,894 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 02:18:29] 2025-04-16 06:17:57,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,894 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 02:18:29] 2025-04-16 06:17:57,894 | INFO     | job 6602100877 has completed (purged errors)
[2025-04-16 02:18:29] 2025-04-16 06:17:57,895 | INFO     | overall cleanup function is called
[2025-04-16 02:18:29] 2025-04-16 06:17:58,482 | INFO     | PID=36755 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-16 02:18:29] 2025-04-16 06:17:58,482 | INFO     | .. there are 51 such processes running
[2025-04-16 02:18:29] 2025-04-16 06:17:59,037 | INFO     | --- collectZombieJob: --- 10, [22874]
[2025-04-16 02:18:29] 2025-04-16 06:17:59,037 | INFO     | zombie collector waiting for pid 22874
[2025-04-16 02:18:29] 2025-04-16 06:17:59,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 02:18:29] 2025-04-16 06:17:59,038 | INFO     | collected zombie processes
[2025-04-16 02:18:29] 2025-04-16 06:17:59,038 | INFO     | will attempt to kill all subprocesses of pid=22874
[2025-04-16 02:18:29] 2025-04-16 06:18:03,710 | INFO     | process IDs to be killed: [22874] (in reverse order)
[2025-04-16 02:18:29] 2025-04-16 06:18:08,165 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 02:18:29] 2025-04-16 06:18:08,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 02:18:29] 2025-04-16 06:18:08,897 | INFO     | did not find any defunct processes belonging to 22874
[2025-04-16 02:18:29] 2025-04-16 06:18:09,078 | INFO     | did not find any defunct processes belonging to 22874
[2025-04-16 02:18:29] 2025-04-16 06:18:09,078 | INFO     | ready for new job
[2025-04-16 02:18:29] 2025-04-16 06:18:09,079 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 02:18:29] 2025-04-16 06:18:09,150 | INFO     | **************************************
[2025-04-16 02:18:29] 2025-04-16 06:18:09,150 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 02:18:29] 2025-04-16 06:18:09,151 | INFO     | **************************************
[2025-04-16 02:18:29] 2025-04-16 06:18:09,151 | INFO     | 
[2025-04-16 02:18:29] 2025-04-16 06:18:09,184 | INFO     | architecture information:
[2025-04-16 02:18:29] 2025-04-16 06:18:09,207 | INFO     | executing command: cat /etc/os-release
[2025-04-16 02:18:29] 2025-04-16 06:18:10,155 | INFO     | cat /etc/os-release:
[2025-04-16 02:18:29] NAME="CentOS Linux"
[2025-04-16 02:18:29] VERSION="7 (Core)"
[2025-04-16 02:18:29] ID="centos"
[2025-04-16 02:18:29] ID_LIKE="rhel fedora"
[2025-04-16 02:18:29] VERSION_ID="7"
[2025-04-16 02:18:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 02:18:29] ANSI_COLOR="0;31"
[2025-04-16 02:18:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 02:18:29] HOME_URL="https://www.centos.org/"
[2025-04-16 02:18:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 02:18:29] 
[2025-04-16 02:18:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 02:18:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 02:18:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 02:18:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 02:18:29] 
[2025-04-16 02:18:29] 2025-04-16 06:18:10,176 | INFO     | **************************************
[2025-04-16 02:18:29] 2025-04-16 06:18:10,684 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-16 02:18:29] 2025-04-16 06:18:11,541 | INFO     | sufficient remaining disk space (56631492608 B)
[2025-04-16 02:18:29] 2025-04-16 06:18:11,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 02:18:29] 2025-04-16 06:18:11,551 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 02:18:29] 2025-04-16 06:18:11,551 | INFO     | update_server=False
[2025-04-16 02:18:29] 2025-04-16 06:18:11,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 02:18:29] 2025-04-16 06:18:11,551 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 02:18:29] 2025-04-16 06:18:11,551 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 02:18:29] 2025-04-16 06:18:11,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 02:18:29] 2025-04-16 06:18:11,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 02:18:29] 2025-04-16 06:18:11,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 02:18:29] 2025-04-16 06:18:11,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 02:18:29] 2025-04-16 06:18:11,877 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-16 02:18:29] 2025-04-16 06:18:11,877 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-16 02:18:29] 2025-04-16 06:18:11,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 02:18:29] 2025-04-16 06:18:11,878 | INFO     | will abort loop
[2025-04-16 02:18:29] 2025-04-16 06:18:12,198 | INFO     | all job control threads have been joined
[2025-04-16 02:18:29] 2025-04-16 06:18:12,297 | INFO     | all data control threads have been joined
[2025-04-16 02:18:29] 2025-04-16 06:18:12,493 | INFO     | all payload control threads have been joined
[2025-04-16 02:18:29] 2025-04-16 06:18:12,556 | INFO     | [job] retrieve thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:12,562 | INFO     | [job] queue monitor thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:12,883 | INFO     | [job] job monitor thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,186 | INFO     | [data] copytool_in thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,187 | INFO     | [job] validate thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,190 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,203 | INFO     | [job] control thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,194 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,194 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,310 | INFO     | [data] control thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,327 | INFO     | [payload] validate_post thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,331 | INFO     | [payload] failed_post thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,498 | INFO     | [payload] control thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,575 | INFO     | [data] copytool_out thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:13,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 02:18:29] 2025-04-16 06:18:17,893 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 02:18:29] 2025-04-16 06:18:17,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140221050632000)>', '<ExcThread(monitor, started 140220473272064)>']
[2025-04-16 02:18:29] 2025-04-16 06:18:18,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 02:18:29] 2025-04-16 06:18:18,640 | INFO     | [monitor] control thread has ended
[2025-04-16 02:18:29] 2025-04-16 06:18:22,939 | INFO     | all workflow threads have been joined
[2025-04-16 02:18:29] 2025-04-16 06:18:22,939 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 02:18:29] 2025-04-16 06:18:22,940 | INFO     | traces error code: 0
[2025-04-16 02:18:29] 2025-04-16 06:18:22,940 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 02:18:29] 2025-04-16 06:18:24,383 [wrapper] ==== pilot stdout END ====
[2025-04-16 02:18:29] 2025-04-16 06:18:24,681 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 02:18:29] 2025-04-16 06:18:24,719 [wrapper] pilotpid: 36755
[2025-04-16 02:18:29] 2025-04-16 06:18:24,733 [wrapper] Pilot exit status: 0
[2025-04-16 02:18:29] 2025-04-16 06:18:24,900 [wrapper] pandaids: 6602100877 6602100877
[2025-04-16 02:18:29] 2025-04-16 06:18:26,377 [wrapper] cleanup supervisor_pilot 37845 36756
[2025-04-16 02:18:29] 2025-04-16 06:18:26,397 [wrapper] Test setup, not cleaning
[2025-04-16 02:18:29] 2025-04-16 06:18:26,502 [wrapper] apfmon messages muted
[2025-04-16 02:18:29] 2025-04-16 06:18:26,549 [wrapper] ==== wrapper stdout END ====
[2025-04-16 02:18:29] 2025-04-16 06:18:26,603 [wrapper] ==== wrapper stderr END ====
[2025-04-16 02:18:29]  *** Error codes and diagnostics ***
[2025-04-16 02:18:29]     "exeErrorCode": 0,
[2025-04-16 02:18:29]     "exeErrorDiag": "",
[2025-04-16 02:18:29]     "pilotErrorCode": 0,
[2025-04-16 02:18:29]     "pilotErrorDiag": "",
[2025-04-16 02:18:29]  *** Listing of results directory ***
[2025-04-16 02:18:29] total 647140
[2025-04-16 02:18:29] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas    495897 Apr 13 15:29 pilot3.tar.gz
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas      5111 Apr 13 15:41 queuedata.json
[2025-04-16 02:18:29] -rwx------ 1 boincer umatlas     37140 Apr 13 15:44 runpilot2-wrapper.sh
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas       100 Apr 14 09:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 02:18:29] -rwxr-xr-x 1 boincer umatlas      7986 Apr 14 09:55 run_atlas
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas       105 Apr 14 09:55 job.xml
[2025-04-16 02:18:29] -rw-r--r-- 3 boincer umatlas 225794474 Apr 14 09:55 EVNT.44075481._000331.pool.root.1
[2025-04-16 02:18:29] -rw-r--r-- 3 boincer umatlas 225794474 Apr 14 09:55 ATLAS.root_0
[2025-04-16 02:18:29] drwxrwx--x 2 boincer umatlas      4096 Apr 14 09:55 shared
[2025-04-16 02:18:29] -rw-r--r-- 2 boincer umatlas    508893 Apr 14 09:55 input.tar.gz
[2025-04-16 02:18:29] -rw-r--r-- 2 boincer umatlas     17569 Apr 14 09:55 start_atlas.sh
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas         0 Apr 14 09:55 boinc_lockfile
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas      2575 Apr 14 22:12 pandaJob.out
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas       467 Apr 14 22:13 setup.sh.local
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas    983985 Apr 14 22:15 agis_schedconf.cvmfs.json
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas 192590286 Apr 16 02:07 HITS.44075483._008483.pool.root.1
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas       532 Apr 16 02:07 boinc_task_state.xml
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas      6135 Apr 16 02:12 init_data.xml
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas      1076 Apr 16 02:15 memory_monitor_summary.json
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas   1603529 Apr 16 02:15 agis_ddmendpoints.agis.ALL.json
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas   1048010 Apr 16 02:16 log.44075483._008483.job.log.tgz.1
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas        96 Apr 16 02:17 pilot_heartbeat.json
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas      7765 Apr 16 02:17 heartbeat.json
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas      8192 Apr 16 02:18 boinc_mmap_file
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas        29 Apr 16 02:18 wrapper_checkpoint.txt
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas      4662 Apr 16 02:18 pilotlog.txt
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas   6276991 Apr 16 02:18 log.44075483._008483.job.log.1
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas       357 Apr 16 02:18 output.list
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas       620 Apr 16 02:18 runtime_log
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas   7342080 Apr 16 02:18 result.tar.gz
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas     11505 Apr 16 02:18 runtime_log.err
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas       792 Apr 16 02:18 qxZKDmvQIO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmnfULDmITwtvm.diag
[2025-04-16 02:18:29] -rw-r--r-- 1 boincer umatlas     23813 Apr 16 02:18 stderr.txt
[2025-04-16 02:18:29] HITS file was successfully produced:
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas 192590286 Apr 16 02:07 shared/HITS.pool.root.1
[2025-04-16 02:18:29]  *** Contents of shared directory: ***
[2025-04-16 02:18:29] total 416280
[2025-04-16 02:18:29] -rw-r--r-- 3 boincer umatlas 225794474 Apr 14 09:55 ATLAS.root_0
[2025-04-16 02:18:29] -rw-r--r-- 2 boincer umatlas    508893 Apr 14 09:55 input.tar.gz
[2025-04-16 02:18:29] -rw-r--r-- 2 boincer umatlas     17569 Apr 14 09:55 start_atlas.sh
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas 192590286 Apr 16 02:07 HITS.pool.root.1
[2025-04-16 02:18:29] -rw------- 1 boincer umatlas   7342080 Apr 16 02:18 result.tar.gz
02:18:31 (17621): run_atlas exited; CPU time 67073.319802
02:18:31 (17621): called boinc_finish(0)

</stderr_txt>
]]>

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