Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 09:29:50 (1458535): Detected: vboxwrapper 26206
2025-04-14 09:29:50 (1458535): Detected: BOINC client v8.0.4
2025-04-14 09:29:51 (1458535): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-04-14 09:29:51 (1458535): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 09:29:51 (1458535): Create VM. (boinc_7176d0d7f1a32e6e, slot#3)
2025-04-14 09:29:52 (1458535): Setting Memory Size for VM. (4200MB)
2025-04-14 09:29:52 (1458535): Setting CPU Count for VM. (2)
2025-04-14 09:29:53 (1458535): Setting Chipset Options for VM.
2025-04-14 09:29:53 (1458535): Setting Graphics Controller Options for VM.
2025-04-14 09:29:53 (1458535): Setting Boot Options for VM.
2025-04-14 09:29:54 (1458535): Setting Network Configuration for NAT.
2025-04-14 09:29:54 (1458535): Enabling VM Network Access.
2025-04-14 09:29:55 (1458535): Disabling USB Support for VM.
2025-04-14 09:29:55 (1458535): Disabling COM Port Support for VM.
2025-04-14 09:29:56 (1458535): Disabling LPT Port Support for VM.
2025-04-14 09:29:56 (1458535): Disabling Audio Support for VM.
2025-04-14 09:29:57 (1458535): Disabling Clipboard Support for VM.
2025-04-14 09:29:57 (1458535): Disabling Drag and Drop Support for VM.
2025-04-14 09:29:58 (1458535): Adding storage controller(s) to VM.
2025-04-14 09:29:59 (1458535): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 09:30:06 (1458535): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 09:30:06 (1458535): forwarding host port 42183 to guest port 80
2025-04-14 09:30:07 (1458535): Enabling remote desktop for VM.
2025-04-14 09:30:07 (1458535): Enabling shared directory for VM.
2025-04-14 09:30:09 (1458535): Starting VM using VBoxManage interface. (boinc_7176d0d7f1a32e6e, slot#3)
2025-04-14 09:30:11 (1458535): Successfully started VM. (PID = '1459002')
2025-04-14 09:30:11 (1458535): Reporting VM Process ID to BOINC.
2025-04-14 09:30:11 (1458535): Guest Log: BIOS: VirtualBox 7.0.16
2025-04-14 09:30:11 (1458535): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 09:30:11 (1458535): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 09:30:11 (1458535): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 09:30:11 (1458535): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 09:30:11 (1458535): Detected: Web Application Enabled (http://localhost:42183)
2025-04-14 09:30:11 (1458535): Detected: Remote Desktop Enabled (localhost:39909)
2025-04-14 09:30:11 (1458535): Preference change detected
2025-04-14 09:30:11 (1458535): Setting CPU throttle for VM. (100%)
2025-04-14 09:30:12 (1458535): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 09:30:14 (1458535): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 09:30:14 (1458535): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 09:30:22 (1458535): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 09:30:22 (1458535): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 09:30:22 (1458535): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 09:30:48 (1458535): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 09:30:48 (1458535): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 09:31:57 (1458535): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.001362 main     Log opened 2025-04-14T16:31:54.980772000Z
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.002261 main     OS Product: Linux
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.002579 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.002744 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.002932 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.002937 main     Process ID: 1237
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.002941 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 09:31:57 (1458535): Guest Log: 00:00:00.011671 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 09:31:58 (1458535): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 09:31:58 (1458535): Guest Log: [INFO] Mounting shared directory
2025-04-14 09:31:59 (1458535): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 09:32:12 (1458535): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 09:32:12 (1458535): Guest Log: [INFO] Detected branch: prod
2025-04-14 09:32:13 (1458535): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 09:32:13 (1458535): Guest Log: Copying input files
2025-04-14 09:32:24 (1458535): Guest Log: Copied input files into RunAtlas.
2025-04-14 09:32:24 (1458535): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 09:32:24 (1458535): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 09:32:24 (1458535): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 09:32:24 (1458535): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 09:32:36 (1458535): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 09:32:38 (1458535): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 09:32:38 (1458535): Guest Log: 2.6.3.0 1531 0 30076 144857 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 09:32:47 (1458535): Guest Log: copied the webapp to /var/www
2025-04-14 09:32:49 (1458535): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-14 09:32:49 (1458535): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-14 09:33:00 (1458535): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 09:33:00 (1458535): Guest Log:  *** Starting ATLAS job. (PandaID=6602116098 taskID=44075483) ***
2025-04-14 09:57:24 (1458535): Guest Log:  *** Job finished ***
2025-04-14 09:57:24 (1458535): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:10,126 | INFO     | [payload] failed_post thread has finished
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:10,321 | INFO     | [job] queue monitor thread has finished
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:13,426 | INFO     | [data] queue_monitor thread has finished
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:14,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140345584379712)>', '<ExcThread(monitor, started 140345153148672)>']
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:15,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:15,361 | INFO     | [monitor] control thread has ended
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:19,544 | INFO     | all workflow threads have been joined
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:19,547 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:19,550 | INFO     | traces error code: 0
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:19,553 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:20,388 [wrapper] ==== pilot stdout END ====
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:20,447 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:20,514 [wrapper] pilotpid: 5874
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:20,568 [wrapper] Pilot exit status: 0
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:20,916 [wrapper] pandaids: 6602116098
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:21,222 [wrapper] cleanup supervisor_pilot 28500 5875
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:21,280 [wrapper] Test setup, not cleaning
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:21,335 [wrapper] apfmon messages muted
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:21,390 [wrapper] ==== wrapper stdout END ====
2025-04-14 09:57:24 (1458535): Guest Log: 2025-04-14 16:57:21,446 [wrapper] ==== wrapper stderr END ====
2025-04-14 09:57:24 (1458535): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 09:57:24 (1458535): Guest Log:     "exeErrorCode": 65,
2025-04-14 09:57:24 (1458535): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Py:ComponentAccumulator   ERROR This ComponentAccumulator was never merged!\"",
2025-04-14 09:57:24 (1458535): Guest Log:     "pilotErrorCode": 1305,
2025-04-14 09:57:24 (1458535): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Py:ComponentAccumulator   ERROR This ComponentAccumulator was never merged!\"",
2025-04-14 09:57:24 (1458535): Guest Log:  *** Listing of results directory ***
2025-04-14 09:57:24 (1458535): Guest Log: total 4264
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 14 04:24 pilot3.tar.gz
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 14 04:36 queuedata.json
2025-04-14 09:57:24 (1458535): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 14 04:36 runpilot2-wrapper.sh
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas  508893 Apr 14 16:32 input.tar.gz
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas   17569 Apr 14 16:32 start_atlas.sh
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas    6146 Apr 14 16:32 init_data.xml
2025-04-14 09:57:24 (1458535): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 14 16:32 EVNT.44075481._000505.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas    2578 Apr 14 16:32 pandaJob.out
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas     424 Apr 14 16:33 setup.sh.local
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas  986099 Apr 14 16:36 agis_schedconf.cvmfs.json
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas 1603529 Apr 14 16:36 agis_ddmendpoints.agis.ALL.json
2025-04-14 09:57:24 (1458535): Guest Log: drwx------. 4 atlas atlas    4096 Apr 14 16:36 pilot3
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas   55105 Apr 14 16:53 log.44075483._012816.job.log.tgz.1
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas      95 Apr 14 16:56 pilot_heartbeat.json
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas   10343 Apr 14 16:57 heartbeat.json
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas    4413 Apr 14 16:57 pilotlog.txt
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas  242342 Apr 14 16:57 log.44075483._012816.job.log.1
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas     188 Apr 14 16:57 output.list
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 14 16:57 runtime_log
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas  317440 Apr 14 16:57 result.tar.gz
2025-04-14 09:57:24 (1458535): Guest Log: -rw-------. 1 atlas atlas     664 Apr 14 16:57 tgwMDmPjQO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmZVVLDmYRDVGm.diag
2025-04-14 09:57:24 (1458535): Guest Log: -rw-r--r--. 1 atlas atlas   10840 Apr 14 16:57 runtime_log.err
2025-04-14 09:57:24 (1458535): Guest Log: Looking for outputfile HITS.44075483._012816.pool.root.1
2025-04-14 09:57:24 (1458535): Guest Log: No HITS file was produced
2025-04-14 09:57:24 (1458535): Guest Log: Successfully finished the ATLAS job!
2025-04-14 09:57:24 (1458535): Guest Log: Copying the results back to the shared directory!
2025-04-14 09:57:25 (1458535): Guest Log:  *** Contents of shared directory: ***
2025-04-14 09:57:25 (1458535): Guest Log: total 219192
2025-04-14 09:57:25 (1458535): Guest Log: -rw-r--r--. 1 root root 223590093 Apr 14 16:29 ATLAS.root_0
2025-04-14 09:57:25 (1458535): Guest Log: -rw-r--r--. 1 root root      6146 Apr 14 16:29 init_data.xml
2025-04-14 09:57:25 (1458535): Guest Log: -rw-r--r--. 1 root root    508893 Apr 14 16:29 input.tar.gz
2025-04-14 09:57:25 (1458535): Guest Log: -rw-r--r--. 1 root root    317440 Apr 14  2025 result.tar.gz
2025-04-14 09:57:25 (1458535): Guest Log: -rw-r--r--. 1 root root     17569 Apr 14 16:29 start_atlas.sh
2025-04-14 09:57:25 (1458535): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 09:57:26 (1458535): VM Completion File Detected.
2025-04-14 09:57:26 (1458535): Powering off VM.
2025-04-14 09:57:28 (1458535): Successfully stopped VM.
2025-04-14 09:57:28 (1458535): Deregistering VM. (boinc_7176d0d7f1a32e6e, slot#3)
2025-04-14 09:57:28 (1458535): Removing network bandwidth throttle group from VM.
2025-04-14 09:57:28 (1458535): Removing VM from VirtualBox.
09:57:34 (1458535): called boinc_finish(0)

</stderr_txt>
]]>

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