Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:45:42 (15486): wrapper (7.7.26015): starting
07:45:42 (15486): wrapper: running run_atlas (--nthreads 12)
[2025-04-14 07:45:42] Arguments: --nthreads 12
[2025-04-14 07:45:42] Threads: 12
[2025-04-14 07:45:42] Checking for CVMFS
[2025-04-14 07:45:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-14 07:45:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-14 07:45:42] Running cvmfs_config stat atlas.cern.ch
[2025-04-14 07:45:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-14 07:45:43] 2.11.2.0 6988 37556 130436 144848 3 111 12469359 18432000 6432 130560 0 54256809 98.477 184617676 32281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-14 07:45:43] CVMFS is ok
[2025-04-14 07:45:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-14 07:45:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-14 07:45:43] Further information can be found at the LHC@home message board.
[2025-04-14 07:45:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-14 07:45:43] Checking for apptainer binary...
[2025-04-14 07:45:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-14 07:45:43] Running /usr/bin/apptainer --version
[2025-04-14 07:45:43] apptainer version 1.3.2-1.el7
[2025-04-14 07:45:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-14 07:45:51] c-206-17.aglt2.org
[2025-04-14 07:45:51] apptainer works
[2025-04-14 07:45:51] Set ATHENA_PROC_NUMBER=12
[2025-04-14 07:45:51] Set ATHENA_CORE_NUMBER=12
[2025-04-14 07:45:52] Starting ATLAS job with PandaID=6602115029
[2025-04-14 07:45:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:12:56 (32627): wrapper (7.7.26015): starting
13:12:56 (32627): wrapper: running run_atlas (--nthreads 12)
[2025-04-14 13:12:56] Arguments: --nthreads 12
[2025-04-14 13:12:56] Threads: 12
[2025-04-14 13:12:56] This job has been restarted, cleaning up previous attempt
[2025-04-14 13:12:56] Checking for CVMFS
[2025-04-14 13:12:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-14 13:12:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-14 13:12:56] Running cvmfs_config stat atlas.cern.ch
[2025-04-14 13:12:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-14 13:12:56] 2.11.2.0 6988 37884 124324 144857 0 356 16936413 18432001 7910 130560 0 54969137 98.481 186266264 32266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-14 13:12:56] CVMFS is ok
[2025-04-14 13:12:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-14 13:12:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-14 13:12:56] Further information can be found at the LHC@home message board.
[2025-04-14 13:12:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-14 13:12:56] Checking for apptainer binary...
[2025-04-14 13:12:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-14 13:12:56] Running /usr/bin/apptainer --version
[2025-04-14 13:12:57] apptainer version 1.3.2-1.el7
[2025-04-14 13:12:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-14 13:13:00] c-206-17.aglt2.org
[2025-04-14 13:13:00] apptainer works
[2025-04-14 13:13:00] Set ATHENA_PROC_NUMBER=12
[2025-04-14 13:13:00] Set ATHENA_CORE_NUMBER=12
[2025-04-14 13:13:00] Starting ATLAS job with PandaID=6602115029
[2025-04-14 13:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-15 17:50:41]  *** The last 200 lines of the pilot log: ***
[2025-04-15 17:50:41] 2025-04-15 21:50:03,742 | INFO     | chi2: 6.97323403772032
[2025-04-15 17:50:41] 2025-04-15 21:50:03,743 | INFO     | current chi2=6.97323403772032 (change=25.63051371161878 %)
[2025-04-15 17:50:41] 2025-04-15 21:50:03,746 | INFO     | sum of square deviations: 1462449854471.1384
[2025-04-15 17:50:41] 2025-04-15 21:50:04,015 | INFO     | sum of deviations: 1989691852390.8743
[2025-04-15 17:50:41] 2025-04-15 21:50:04,016 | INFO     | mean x: 1744701963.6893263
[2025-04-15 17:50:41] 2025-04-15 21:50:04,016 | INFO     | mean y: 2656559.406678593
[2025-04-15 17:50:41] 2025-04-15 21:50:04,016 | INFO     | -- intersect: -2371044850.8603907
[2025-04-15 17:50:41] 2025-04-15 21:50:04,016 | INFO     | intersect: -2371044850.8603907
[2025-04-15 17:50:41] 2025-04-15 21:50:04,020 | INFO     | chi2: 6.973264172336147
[2025-04-15 17:50:41] 2025-04-15 21:50:04,020 | INFO     | current chi2=6.973264172336147 (change=-0.0004321469158166099 %)
[2025-04-15 17:50:41] 2025-04-15 21:50:04,020 | INFO     | right removable region: 1676
[2025-04-15 17:50:41] 2025-04-15 21:50:04,023 | INFO     | sum of square deviations: 1475567959583.8767
[2025-04-15 17:50:41] 2025-04-15 21:50:04,184 | INFO     | sum of deviations: 1119323751926.2217
[2025-04-15 17:50:41] 2025-04-15 21:50:04,184 | INFO     | mean x: 1744702421.1890607
[2025-04-15 17:50:41] 2025-04-15 21:50:04,185 | INFO     | mean y: 2658399.153388823
[2025-04-15 17:50:41] 2025-04-15 21:50:04,185 | INFO     | -- intersect: -1320823076.1632981
[2025-04-15 17:50:41] 2025-04-15 21:50:04,185 | INFO     | intersect: -1320823076.1632981
[2025-04-15 17:50:41] 2025-04-15 21:50:04,188 | INFO     | chi2: 6.391574318001439
[2025-04-15 17:50:41] 2025-04-15 21:50:04,188 | INFO     | current chi2=6.391574318001439 (change=31.83391005772489 %)
[2025-04-15 17:50:41] 2025-04-15 21:50:04,192 | INFO     | sum of square deviations: 1462447209862.071
[2025-04-15 17:50:41] 2025-04-15 21:50:05,296 | INFO     | sum of deviations: 694646478871.2355
[2025-04-15 17:50:41] 2025-04-15 21:50:05,296 | INFO     | mean x: 1744702573.6940966
[2025-04-15 17:50:41] 2025-04-15 21:50:05,298 | INFO     | mean y: 2663335.023852117
[2025-04-15 17:50:41] 2025-04-15 21:50:05,299 | INFO     | -- intersect: -826051364.0923575
[2025-04-15 17:50:41] 2025-04-15 21:50:05,299 | INFO     | intersect: -826051364.0923575
[2025-04-15 17:50:41] 2025-04-15 21:50:05,302 | INFO     | chi2: 4.450966786304685
[2025-04-15 17:50:41] 2025-04-15 21:50:05,302 | INFO     | current chi2=4.450966786304685 (change=30.361964598161105 %)
[2025-04-15 17:50:41] 2025-04-15 21:50:05,368 | INFO     | sum of square deviations: 1449404461602.6765
[2025-04-15 17:50:41] 2025-04-15 21:50:05,749 | INFO     | PID=4097 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-15 17:50:41] 2025-04-15 21:50:05,763 | INFO     | .. there are 18 such processes running
[2025-04-15 17:50:41] 2025-04-15 21:50:05,780 | INFO     | sum of deviations: 307394328323.0099
[2025-04-15 17:50:41] 2025-04-15 21:50:05,780 | INFO     | mean x: 1744702726.1991627
[2025-04-15 17:50:41] 2025-04-15 21:50:05,781 | INFO     | mean y: 2667862.4354066984
[2025-04-15 17:50:41] 2025-04-15 21:50:05,781 | INFO     | -- intersect: -367354265.1702239
[2025-04-15 17:50:41] 2025-04-15 21:50:05,781 | INFO     | intersect: -367354265.1702239
[2025-04-15 17:50:41] 2025-04-15 21:50:05,784 | INFO     | chi2: 2.829062175077856
[2025-04-15 17:50:41] 2025-04-15 21:50:05,784 | INFO     | current chi2=2.829062175077856 (change=36.439377984516 %)
[2025-04-15 17:50:41] 2025-04-15 21:50:05,787 | INFO     | sum of square deviations: 1436439482243.1995
[2025-04-15 17:50:41] 2025-04-15 21:50:05,930 | INFO     | sum of deviations: 145371991529.28677
[2025-04-15 17:50:41] 2025-04-15 21:50:05,930 | INFO     | mean x: 1744702878.7042592
[2025-04-15 17:50:41] 2025-04-15 21:50:05,931 | INFO     | mean y: 2669767.4103179364
[2025-04-15 17:50:41] 2025-04-15 21:50:05,931 | INFO     | -- intersect: -173899406.04907343
[2025-04-15 17:50:41] 2025-04-15 21:50:05,931 | INFO     | intersect: -173899406.04907343
[2025-04-15 17:50:41] 2025-04-15 21:50:05,934 | INFO     | chi2: 2.533826929424016
[2025-04-15 17:50:41] 2025-04-15 21:50:05,934 | INFO     | current chi2=2.533826929424016 (change=10.435799122927207 %)
[2025-04-15 17:50:41] 2025-04-15 21:50:05,935 | INFO     | left removable region: 40
[2025-04-15 17:50:41] 2025-04-15 21:50:05,938 | INFO     | sum of square deviations: 1357781437144.125
[2025-04-15 17:50:41] 2025-04-15 21:50:05,953 | INFO     | monitor loop #4498: job 0:6602115029 is in state 'finished'
[2025-04-15 17:50:41] 2025-04-15 21:50:05,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-15 17:50:41] 2025-04-15 21:50:06,064 | INFO     | sum of deviations: 459937181912.5231
[2025-04-15 17:50:41] 2025-04-15 21:50:06,065 | INFO     | mean x: 1744703153.2304401
[2025-04-15 17:50:41] 2025-04-15 21:50:06,065 | INFO     | mean y: 2674554.8288508556
[2025-04-15 17:50:41] 2025-04-15 21:50:06,065 | INFO     | -- intersect: -588329144.0127935
[2025-04-15 17:50:41] 2025-04-15 21:50:06,065 | INFO     | intersect: -588329144.0127935
[2025-04-15 17:50:41] 2025-04-15 21:50:06,068 | INFO     | chi2: 0.009799206453956783
[2025-04-15 17:50:41] 2025-04-15 21:50:06,069 | INFO     | -- intersect: -588329144.0127935
[2025-04-15 17:50:41] 2025-04-15 21:50:06,069 | INFO     | current memory leak: 0.34 B/s (using 1636 data points, chi2=0.01)
[2025-04-15 17:50:41] 2025-04-15 21:50:06,071 | INFO     | ..............................
[2025-04-15 17:50:41] 2025-04-15 21:50:06,071 | INFO     | . Timing measurements:
[2025-04-15 17:50:41] 2025-04-15 21:50:06,071 | INFO     | . get job = 0 s
[2025-04-15 17:50:41] 2025-04-15 21:50:06,072 | INFO     | . initial setup = 3 s
[2025-04-15 17:50:41] 2025-04-15 21:50:06,072 | INFO     | . payload setup = 12 s
[2025-04-15 17:50:41] 2025-04-15 21:50:06,072 | INFO     | . stage-in = 0 s
[2025-04-15 17:50:41] 2025-04-15 21:50:06,072 | INFO     | . payload execution = 102880 s
[2025-04-15 17:50:41] 2025-04-15 21:50:06,073 | INFO     | . stage-out = 17 s
[2025-04-15 17:50:41] 2025-04-15 21:50:06,073 | INFO     | . log creation = 6 s
[2025-04-15 17:50:41] 2025-04-15 21:50:06,073 | INFO     | ..............................
[2025-04-15 17:50:41] 2025-04-15 21:50:07,463 | INFO     | 
[2025-04-15 17:50:41] 2025-04-15 21:50:07,473 | INFO     | job summary report
[2025-04-15 17:50:41] 2025-04-15 21:50:07,473 | INFO     | --------------------------------------------------
[2025-04-15 17:50:41] 2025-04-15 21:50:07,473 | INFO     | PanDA job id: 6602115029
[2025-04-15 17:50:41] 2025-04-15 21:50:07,497 | INFO     | task id: 44075483
[2025-04-15 17:50:41] 2025-04-15 21:50:07,497 | INFO     | errors: (none)
[2025-04-15 17:50:41] 2025-04-15 21:50:07,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-15 17:50:41] 2025-04-15 21:50:07,517 | INFO     | pilot state: finished 
[2025-04-15 17:50:41] 2025-04-15 21:50:07,517 | INFO     | transexitcode: 0
[2025-04-15 17:50:41] 2025-04-15 21:50:07,517 | INFO     | exeerrorcode: 0
[2025-04-15 17:50:41] 2025-04-15 21:50:07,517 | INFO     | exeerrordiag: 
[2025-04-15 17:50:41] 2025-04-15 21:50:07,537 | INFO     | exitcode: 0
[2025-04-15 17:50:41] 2025-04-15 21:50:07,537 | INFO     | exitmsg: OK
[2025-04-15 17:50:41] 2025-04-15 21:50:07,537 | INFO     | cpuconsumptiontime: 111130 s
[2025-04-15 17:50:41] 2025-04-15 21:50:07,537 | INFO     | nevents: 400
[2025-04-15 17:50:41] 2025-04-15 21:50:07,558 | INFO     | neventsw: 0
[2025-04-15 17:50:41] 2025-04-15 21:50:07,558 | INFO     | pid: 17628
[2025-04-15 17:50:41] 2025-04-15 21:50:07,558 | INFO     | pgrp: 17628
[2025-04-15 17:50:41] 2025-04-15 21:50:07,558 | INFO     | corecount: 12
[2025-04-15 17:50:41] 2025-04-15 21:50:07,593 | INFO     | event service: False
[2025-04-15 17:50:41] 2025-04-15 21:50:07,593 | INFO     | sizes: {0: 2417313, 1: 2417313, 8: 2417547, 12: 2417575, 102903: 2482608, 102905: 2482607, 102924: 2491732, 102926: 2491788, 102987: 2491958}
[2025-04-15 17:50:41] 2025-04-15 21:50:07,593 | INFO     | --------------------------------------------------
[2025-04-15 17:50:41] 2025-04-15 21:50:07,627 | INFO     | 
[2025-04-15 17:50:41] 2025-04-15 21:50:07,627 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-15 17:50:41] 2025-04-15 21:50:08,201 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,202 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,202 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,202 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,202 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,242 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,242 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,242 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,242 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,262 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,262 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-15 17:50:41] 2025-04-15 21:50:08,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-15 17:50:41] 2025-04-15 21:50:08,303 | INFO     | job 6602115029 has completed (purged errors)
[2025-04-15 17:50:41] 2025-04-15 21:50:08,312 | INFO     | overall cleanup function is called
[2025-04-15 17:50:41] 2025-04-15 21:50:09,359 | INFO     | --- collectZombieJob: --- 10, [17628]
[2025-04-15 17:50:41] 2025-04-15 21:50:09,359 | INFO     | zombie collector waiting for pid 17628
[2025-04-15 17:50:41] 2025-04-15 21:50:09,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-15 17:50:41] 2025-04-15 21:50:09,359 | INFO     | collected zombie processes
[2025-04-15 17:50:41] 2025-04-15 21:50:09,359 | INFO     | will attempt to kill all subprocesses of pid=17628
[2025-04-15 17:50:41] 2025-04-15 21:50:14,933 | INFO     | process IDs to be killed: [17628] (in reverse order)
[2025-04-15 17:50:41] 2025-04-15 21:50:16,670 | WARNING  | found no corresponding commands to process id(s)
[2025-04-15 17:50:41] 2025-04-15 21:50:16,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-15 17:50:41] 2025-04-15 21:50:16,867 | INFO     | did not find any defunct processes belonging to 17628
[2025-04-15 17:50:41] 2025-04-15 21:50:17,002 | INFO     | did not find any defunct processes belonging to 17628
[2025-04-15 17:50:41] 2025-04-15 21:50:17,002 | INFO     | ready for new job
[2025-04-15 17:50:41] 2025-04-15 21:50:17,002 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-15 17:50:41] 2025-04-15 21:50:17,051 | INFO     | **************************************
[2025-04-15 17:50:41] 2025-04-15 21:50:17,052 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-15 17:50:41] 2025-04-15 21:50:17,052 | INFO     | **************************************
[2025-04-15 17:50:41] 2025-04-15 21:50:17,052 | INFO     | 
[2025-04-15 17:50:41] 2025-04-15 21:50:17,078 | INFO     | architecture information:
[2025-04-15 17:50:41] 2025-04-15 21:50:17,103 | INFO     | executing command: cat /etc/os-release
[2025-04-15 17:50:41] 2025-04-15 21:50:17,431 | INFO     | cat /etc/os-release:
[2025-04-15 17:50:41] NAME="CentOS Linux"
[2025-04-15 17:50:41] VERSION="7 (Core)"
[2025-04-15 17:50:41] ID="centos"
[2025-04-15 17:50:41] ID_LIKE="rhel fedora"
[2025-04-15 17:50:41] VERSION_ID="7"
[2025-04-15 17:50:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-15 17:50:41] ANSI_COLOR="0;31"
[2025-04-15 17:50:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-15 17:50:41] HOME_URL="https://www.centos.org/"
[2025-04-15 17:50:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-15 17:50:41] 
[2025-04-15 17:50:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-15 17:50:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-15 17:50:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-15 17:50:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-15 17:50:41] 
[2025-04-15 17:50:41] 2025-04-15 21:50:17,432 | INFO     | **************************************
[2025-04-15 17:50:41] 2025-04-15 21:50:17,937 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-15 17:50:41] 2025-04-15 21:50:18,157 | INFO     | sufficient remaining disk space (29266804736 B)
[2025-04-15 17:50:41] 2025-04-15 21:50:18,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-15 17:50:41] 2025-04-15 21:50:18,160 | INFO     | current server update state: UPDATING_FINAL
[2025-04-15 17:50:41] 2025-04-15 21:50:18,160 | INFO     | update_server=False
[2025-04-15 17:50:41] 2025-04-15 21:50:18,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-15 17:50:41] 2025-04-15 21:50:18,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-15 17:50:41] 2025-04-15 21:50:18,161 | INFO     | aborting loop
[2025-04-15 17:50:41] 2025-04-15 21:50:18,161 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-15 17:50:41] 2025-04-15 21:50:18,162 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-15 17:50:41] 2025-04-15 21:50:18,162 | INFO     | found 0 job(s) in 20 queues
[2025-04-15 17:50:41] 2025-04-15 21:50:18,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-15 17:50:41] 2025-04-15 21:50:18,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-15 17:50:41] 2025-04-15 21:50:18,507 | INFO     | all job control threads have been joined
[2025-04-15 17:50:41] 2025-04-15 21:50:18,591 | INFO     | all data control threads have been joined
[2025-04-15 17:50:41] 2025-04-15 21:50:18,713 | INFO     | all payload control threads have been joined
[2025-04-15 17:50:41] 2025-04-15 21:50:19,167 | INFO     | [job] retrieve thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:19,187 | INFO     | [job] job monitor thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:19,513 | INFO     | [job] control thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:19,597 | INFO     | [data] control thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:19,719 | INFO     | [payload] control thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:19,787 | INFO     | [payload] validate_post thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:19,887 | INFO     | [payload] failed_post thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,077 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,168 | INFO     | [data] copytool_out thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,209 | INFO     | [job] create_data_payload thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,221 | INFO     | [job] validate thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-15 17:50:41] 2025-04-15 21:50:20,253 | INFO     | [payload] validate_pre thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,373 | INFO     | [payload] execute_payloads thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,563 | INFO     | [data] copytool_in thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:20,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-15 17:50:41] 2025-04-15 21:50:21,259 | INFO     | [job] queue monitor thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:24,723 | INFO     | [data] queue_monitor thread has finished
[2025-04-15 17:50:41] 2025-04-15 21:50:25,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712064857920)>', '<ExcThread(monitor, started 139711628687104)>']
[2025-04-15 17:50:41] 2025-04-15 21:50:26,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-15 17:50:41] 2025-04-15 21:50:26,243 | INFO     | [monitor] control thread has ended
[2025-04-15 17:50:41] 2025-04-15 21:50:30,373 | INFO     | all workflow threads have been joined
[2025-04-15 17:50:41] 2025-04-15 21:50:30,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-15 17:50:41] 2025-04-15 21:50:30,401 | INFO     | traces error code: 0
[2025-04-15 17:50:41] 2025-04-15 21:50:30,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-15 17:50:41] 2025-04-15 21:50:34,363 [wrapper] ==== pilot stdout END ====
[2025-04-15 17:50:41] 2025-04-15 21:50:34,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-15 17:50:41] 2025-04-15 21:50:34,433 [wrapper] pilotpid: 4097
[2025-04-15 17:50:41] 2025-04-15 21:50:34,487 [wrapper] Pilot exit status: 0
[2025-04-15 17:50:41] 2025-04-15 21:50:34,879 [wrapper] pandaids: 6602115029 6602115029
[2025-04-15 17:50:41] 2025-04-15 21:50:35,431 [wrapper] cleanup supervisor_pilot 31320 4098
[2025-04-15 17:50:41] 2025-04-15 21:50:35,493 [wrapper] Test setup, not cleaning
[2025-04-15 17:50:41] 2025-04-15 21:50:35,547 [wrapper] apfmon messages muted
[2025-04-15 17:50:41] 2025-04-15 21:50:35,593 [wrapper] ==== wrapper stdout END ====
[2025-04-15 17:50:41] 2025-04-15 21:50:35,647 [wrapper] ==== wrapper stderr END ====
[2025-04-15 17:50:41]  *** Error codes and diagnostics ***
[2025-04-15 17:50:41]     "exeErrorCode": 0,
[2025-04-15 17:50:41]     "exeErrorDiag": "",
[2025-04-15 17:50:41]     "pilotErrorCode": 0,
[2025-04-15 17:50:41]     "pilotErrorDiag": "",
[2025-04-15 17:50:41]  *** Listing of results directory ***
[2025-04-15 17:50:41] total 642048
[2025-04-15 17:50:41] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas    495897 Apr 13 23:33 pilot3.tar.gz
[2025-04-15 17:50:41] -rwx------ 1 boincer umatlas     37140 Apr 13 23:42 runpilot2-wrapper.sh
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas      5111 Apr 13 23:42 queuedata.json
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas       100 Apr 14 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-15 17:50:41] -rwxr-xr-x 1 boincer umatlas      7986 Apr 14 07:45 run_atlas
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas       105 Apr 14 07:45 job.xml
[2025-04-15 17:50:41] -rw-r--r-- 3 boincer umatlas 221626246 Apr 14 07:45 EVNT.44075481._000488.pool.root.1
[2025-04-15 17:50:41] -rw-r--r-- 3 boincer umatlas 221626246 Apr 14 07:45 ATLAS.root_0
[2025-04-15 17:50:41] -rw-r--r-- 2 boincer umatlas     17569 Apr 14 07:45 start_atlas.sh
[2025-04-15 17:50:41] drwxrwx--x 2 boincer umatlas      4096 Apr 14 07:45 shared
[2025-04-15 17:50:41] -rw-r--r-- 2 boincer umatlas    508880 Apr 14 07:45 input.tar.gz
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas         0 Apr 14 07:45 boinc_lockfile
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas      2577 Apr 14 13:13 pandaJob.out
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas       467 Apr 14 13:13 setup.sh.local
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas    986099 Apr 14 13:13 agis_schedconf.cvmfs.json
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas 195004488 Apr 15 17:44 HITS.44075483._012398.pool.root.1
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas       533 Apr 15 17:45 boinc_task_state.xml
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas      5954 Apr 15 17:47 init_data.xml
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas      1072 Apr 15 17:48 memory_monitor_summary.json
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas   1603529 Apr 15 17:48 agis_ddmendpoints.agis.ALL.json
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas   1098871 Apr 15 17:49 log.44075483._012398.job.log.tgz.1
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas        96 Apr 15 17:49 pilot_heartbeat.json
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas      7790 Apr 15 17:50 heartbeat.json
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas        30 Apr 15 17:50 wrapper_checkpoint.txt
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas      4476 Apr 15 17:50 pilotlog.txt
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas   6581926 Apr 15 17:50 log.44075483._012398.job.log.1
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas       357 Apr 15 17:50 output.list
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas       620 Apr 15 17:50 runtime_log
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas   7700480 Apr 15 17:50 result.tar.gz
[2025-04-15 17:50:41] -rw------- 1 boincer umatlas       794 Apr 15 17:50 lY6KDm2sPO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmzPVLDmWGnWXm.diag
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas     11621 Apr 15 17:50 runtime_log.err
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas      8192 Apr 15 17:50 boinc_mmap_file
[2025-04-15 17:50:41] -rw-r--r-- 1 boincer umatlas     23263 Apr 15 17:50 stderr.txt
[2025-04-15 17:50:51] HITS file was successfully produced:
[2025-04-15 17:50:51] -rw------- 1 boincer umatlas 195004488 Apr 15 17:44 shared/HITS.pool.root.1
[2025-04-15 17:50:51]  *** Contents of shared directory: ***
[2025-04-15 17:50:51] total 414912
[2025-04-15 17:50:51] -rw-r--r-- 3 boincer umatlas 221626246 Apr 14 07:45 ATLAS.root_0
[2025-04-15 17:50:51] -rw-r--r-- 2 boincer umatlas     17569 Apr 14 07:45 start_atlas.sh
[2025-04-15 17:50:51] -rw-r--r-- 2 boincer umatlas    508880 Apr 14 07:45 input.tar.gz
[2025-04-15 17:50:51] -rw------- 1 boincer umatlas 195004488 Apr 15 17:44 HITS.pool.root.1
[2025-04-15 17:50:51] -rw------- 1 boincer umatlas   7700480 Apr 15 17:50 result.tar.gz
17:50:53 (32627): run_atlas exited; CPU time 113969.963143
17:50:53 (32627): called boinc_finish(0)

</stderr_txt>
]]>

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