Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-17 05:03:41 (13464): Detected: vboxwrapper 26206
2025-04-17 05:03:41 (13464): Detected: BOINC client v8.0.4
2025-04-17 05:03:41 (13464): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-17 05:03:42 (13464): Successfully copied 'init_data.xml' to the shared directory.
2025-04-17 05:03:42 (13464): Create VM. (boinc_27686845984b7d9c, slot#2)
2025-04-17 05:03:43 (13464): Setting Memory Size for VM. (4300MB)
2025-04-17 05:03:43 (13464): Setting CPU Count for VM. (3)
2025-04-17 05:03:43 (13464): Setting Chipset Options for VM.
2025-04-17 05:03:44 (13464): Setting Graphics Controller Options for VM.
2025-04-17 05:03:44 (13464): Setting Boot Options for VM.
2025-04-17 05:03:44 (13464): Setting Network Configuration for NAT.
2025-04-17 05:03:45 (13464): Enabling VM Network Access.
2025-04-17 05:03:45 (13464): Disabling USB Support for VM.
2025-04-17 05:03:45 (13464): Disabling COM Port Support for VM.
2025-04-17 05:03:45 (13464): Disabling LPT Port Support for VM.
2025-04-17 05:03:46 (13464): Disabling Audio Support for VM.
2025-04-17 05:03:46 (13464): Disabling Clipboard Support for VM.
2025-04-17 05:03:46 (13464): Disabling Drag and Drop Support for VM.
2025-04-17 05:03:46 (13464): Adding storage controller(s) to VM.
2025-04-17 05:03:47 (13464): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-17 05:03:47 (13464): Adding VirtualBox Guest Additions to VM.
2025-04-17 05:03:48 (13464): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-17 05:03:48 (13464): forwarding host port 60994 to guest port 80
2025-04-17 05:03:48 (13464): Enabling remote desktop for VM.
2025-04-17 05:03:48 (13464): Required extension pack not installed, remote desktop not enabled.
2025-04-17 05:03:48 (13464): Enabling shared directory for VM.
2025-04-17 05:03:49 (13464): Starting VM using VBoxManage interface. (boinc_27686845984b7d9c, slot#2)
2025-04-17 05:03:58 (13464): Successfully started VM. (PID = '13632')
2025-04-17 05:03:58 (13464): Reporting VM Process ID to BOINC.
2025-04-17 05:03:58 (13464): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-17 05:03:58 (13464): Guest Log: CPUID EDX: 0x178bfbff
2025-04-17 05:03:58 (13464): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-17 05:03:58 (13464): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-17 05:03:58 (13464): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-17 05:03:58 (13464): Detected: Web Application Enabled (http://localhost:60994)
2025-04-17 05:03:58 (13464): Preference change detected
2025-04-17 05:03:58 (13464): Setting CPU throttle for VM. (95%)
2025-04-17 05:03:58 (13464): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-17 05:04:00 (13464): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-17 05:04:00 (13464): Guest Log: BIOS: Booting from Hard Disk...
2025-04-17 05:04:03 (13464): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-17 05:04:03 (13464): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-17 05:04:03 (13464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-17 05:04:13 (13464): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-17 05:04:13 (13464): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-17 05:04:20 (13464): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.000192 main     Log opened 2025-04-17T05:04:18.750974000Z
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.000366 main     OS Product: Linux
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.000417 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.000455 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.000494 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.000495 main     Process ID: 1246
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.000496 main     Package type: LINUX_64BITS_GENERIC
2025-04-17 05:04:20 (13464): Guest Log: 00:00:00.001761 main     5.2.32 r132073 started. Verbose level = 0
2025-04-17 05:04:21 (13464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-17 05:04:21 (13464): Guest Log: [INFO] Mounting shared directory
2025-04-17 05:04:21 (13464): Guest Log: [INFO] Checking for init_data.xml
2025-04-17 05:04:26 (13464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-17 05:04:26 (13464): Guest Log: [INFO] Detected branch: prod
2025-04-17 05:04:26 (13464): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-17 05:04:26 (13464): Guest Log: Copying input files
2025-04-17 05:04:28 (13464): Guest Log: Copied input files into RunAtlas.
2025-04-17 05:04:28 (13464): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-17 05:04:28 (13464): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-17 05:04:28 (13464): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-17 05:04:28 (13464): Guest Log: Further information can be found at the LHC@home message board.
2025-04-17 05:04:30 (13464): Guest Log: 00:00:10.013316 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 195 350 119 000ns (GuestNow=1 744 859 063 404 447 000 ns GuestLast=1 744 866 258 754 566 000 ns fSetTimeLastLoop=true )
2025-04-17 05:04:39 (13464): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-17 05:04:40 (13464): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-17 05:04:40 (13464): Guest Log: 2.6.3.0 1521 0 32104 144946 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-17 05:04:42 (13464): Guest Log: copied the webapp to /var/www
2025-04-17 05:04:42 (13464): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-17 05:04:42 (13464): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-17 05:04:42 (13464): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-17 05:04:42 (13464): Guest Log:  *** Starting ATLAS job. (PandaID=6602119647 taskID=44075483) ***
2025-04-17 05:13:13 (13464): Guest Log:  *** Job finished ***
2025-04-17 05:13:13 (13464): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:12:55,159 | INFO     | [payload] validate_post thread has finished
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:12:55,346 | INFO     | [job] control thread has finished
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:12:56,828 | INFO     | [data] queue_monitor thread has finished
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:12:58,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140506147989312)>', '<ExcThread(monitor, started 140505342007040)>']
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:12:58,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:12:58,824 | INFO     | [monitor] control thread has ended
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,634 | INFO     | all workflow threads have been joined
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,634 | INFO     | end of generic workflow (traces error code: 0)
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,635 | INFO     | traces error code: 0
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,865 [wrapper] ==== pilot stdout END ====
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,879 [wrapper] ==== wrapper stdout RESUME ====
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,893 [wrapper] pilotpid: 5851
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:03,908 [wrapper] Pilot exit status: 0
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:04,007 [wrapper] pandaids: 6602119647
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:04,139 [wrapper] cleanup supervisor_pilot  5857 5852
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:04,159 [wrapper] Test setup, not cleaning
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:04,183 [wrapper] apfmon messages muted
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:04,201 [wrapper] ==== wrapper stdout END ====
2025-04-17 05:13:13 (13464): Guest Log: 2025-04-17 03:13:04,219 [wrapper] ==== wrapper stderr END ====
2025-04-17 05:13:13 (13464): Guest Log:  *** Error codes and diagnostics ***
2025-04-17 05:13:13 (13464): Guest Log:     "exeErrorCode": 65,
2025-04-17 05:13:13 (13464): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-04-17 05:13:13 (13464): Guest Log:     "pilotErrorCode": 1305,
2025-04-17 05:13:13 (13464): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-04-17 05:13:13 (13464): Guest Log:  *** Listing of results directory ***
2025-04-17 05:13:13 (13464): Guest Log: total 4044
2025-04-17 05:13:13 (13464): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 14 07:05 pilot3.tar.gz
2025-04-17 05:13:13 (13464): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 14 07:11 runpilot2-wrapper.sh
2025-04-17 05:13:13 (13464): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 14 07:11 queuedata.json
2025-04-17 05:13:13 (13464): Guest Log: -rwxr-xr-x. 1 atlas atlas    8708 Apr 17 03:04 init_data.xml
2025-04-17 05:13:13 (13464): Guest Log: -rwxr-xr-x. 1 atlas atlas  508892 Apr 17 03:04 input.tar.gz
2025-04-17 05:13:13 (13464): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 17 03:04 start_atlas.sh
2025-04-17 05:13:13 (13464): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 17 03:04 EVNT.44075481._000555.pool.root.1 -> /data/./ATLAS.root_0
2025-04-17 05:13:13 (13464): Guest Log: -rw-r--r--. 1 atlas atlas    2577 Apr 17 03:04 pandaJob.out
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas     424 Apr 17 03:04 setup.sh.local
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas  986528 Apr 17 03:05 agis_schedconf.cvmfs.json
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas 1603529 Apr 17 03:05 agis_ddmendpoints.agis.ALL.json
2025-04-17 05:13:13 (13464): Guest Log: drwx------. 4 atlas atlas    4096 Apr 17 03:05 pilot3
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas   47084 Apr 17 03:10 log.44075483._014087.job.log.tgz.1
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas      95 Apr 17 03:12 pilot_heartbeat.json
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas    8007 Apr 17 03:12 heartbeat.json
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas    4729 Apr 17 03:13 pilotlog.txt
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas  140658 Apr 17 03:13 log.44075483._014087.job.log.1
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas     188 Apr 17 03:13 output.list
2025-04-17 05:13:13 (13464): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 17 03:13 runtime_log
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas  204800 Apr 17 03:13 result.tar.gz
2025-04-17 05:13:13 (13464): Guest Log: -rw-------. 1 atlas atlas     646 Apr 17 03:13 TS9NDmY9SO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmgjVLDmr4AEVm.diag
2025-04-17 05:13:13 (13464): Guest Log: -rw-r--r--. 1 atlas atlas   10794 Apr 17 03:13 runtime_log.err
2025-04-17 05:13:13 (13464): Guest Log: Looking for outputfile HITS.44075483._014087.pool.root.1
2025-04-17 05:13:13 (13464): Guest Log: No HITS file was produced
2025-04-17 05:13:13 (13464): Guest Log: Successfully finished the ATLAS job!
2025-04-17 05:13:13 (13464): Guest Log: Copying the results back to the shared directory!
2025-04-17 05:13:13 (13464): Guest Log:  *** Contents of shared directory: ***
2025-04-17 05:13:13 (13464): Guest Log: total 220460
2025-04-17 05:13:13 (13464): Guest Log: -rwxrwxrwx. 1 root root 224999526 Apr 17 03:03 ATLAS.root_0
2025-04-17 05:13:13 (13464): Guest Log: -rwxrwxrwx. 1 root root      8708 Apr 17 03:03 init_data.xml
2025-04-17 05:13:13 (13464): Guest Log: -rwxrwxrwx. 1 root root    508892 Apr 14 10:59 input.tar.gz
2025-04-17 05:13:13 (13464): Guest Log: -rwxrwxrwx. 1 root root    204800 Apr 17  2025 result.tar.gz
2025-04-17 05:13:13 (13464): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 10:59 start_atlas.sh
2025-04-17 05:13:13 (13464): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-17 05:13:13 (13464): VM Completion File Detected.
2025-04-17 05:13:13 (13464): Powering off VM.
2025-04-17 05:13:22 (13464): Guest Log: 00:08:57.946899 control  Guest control service stopped
2025-04-17 05:13:22 (13464): Guest Log: 00:08:57.962048 control  Guest control worker returned with rc=VINF_SUCCESS
2025-04-17 05:13:22 (13464): Guest Log: 00:08:57.962185 main     Session 0 is about to close ...
2025-04-17 05:13:22 (13464): Guest Log: 00:08:57.962228 main     Stopping all guest processes ...
2025-04-17 05:13:22 (13464): Guest Log: 00:08:57.962268 main     Closing all guest files ...
2025-04-17 05:13:22 (13464): Guest Log: 00:08:58.116460 main     Ended.
2025-04-17 05:13:22 (13464): Successfully stopped VM.
2025-04-17 05:13:22 (13464): Deregistering VM. (boinc_27686845984b7d9c, slot#2)
2025-04-17 05:13:22 (13464): Removing network bandwidth throttle group from VM.
2025-04-17 05:13:23 (13464): Removing VM from VirtualBox.
05:13:28 (13464): called boinc_finish(0)

</stderr_txt>
]]>

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