Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 08:21:50 (14988): Detected: vboxwrapper 26206
2025-04-16 08:21:50 (14988): Detected: BOINC client v8.0.2
2025-04-16 08:21:51 (14988): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-16 08:21:51 (14988): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 08:21:51 (14988): Create VM. (boinc_0b06978243edd9a3, slot#3)
2025-04-16 08:21:52 (14988): Setting Memory Size for VM. (4800MB)
2025-04-16 08:21:52 (14988): Setting CPU Count for VM. (8)
2025-04-16 08:21:52 (14988): Setting Chipset Options for VM.
2025-04-16 08:21:53 (14988): Setting Graphics Controller Options for VM.
2025-04-16 08:21:53 (14988): Setting Boot Options for VM.
2025-04-16 08:21:53 (14988): Setting Network Configuration for NAT.
2025-04-16 08:21:53 (14988): Enabling VM Network Access.
2025-04-16 08:21:54 (14988): Disabling USB Support for VM.
2025-04-16 08:21:54 (14988): Disabling COM Port Support for VM.
2025-04-16 08:21:54 (14988): Disabling LPT Port Support for VM.
2025-04-16 08:21:54 (14988): Disabling Audio Support for VM.
2025-04-16 08:21:55 (14988): Disabling Clipboard Support for VM.
2025-04-16 08:21:55 (14988): Disabling Drag and Drop Support for VM.
2025-04-16 08:21:55 (14988): Adding storage controller(s) to VM.
2025-04-16 08:21:55 (14988): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 08:21:58 (14988): Adding VirtualBox Guest Additions to VM.
2025-04-16 08:21:59 (14988): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 08:21:59 (14988): forwarding host port 61617 to guest port 80
2025-04-16 08:21:59 (14988): Enabling remote desktop for VM.
2025-04-16 08:21:59 (14988): Required extension pack not installed, remote desktop not enabled.
2025-04-16 08:21:59 (14988): Enabling shared directory for VM.
2025-04-16 08:22:00 (14988): Starting VM using VBoxManage interface. (boinc_0b06978243edd9a3, slot#3)
2025-04-16 08:22:04 (14988): Successfully started VM. (PID = '10188')
2025-04-16 08:22:04 (14988): Reporting VM Process ID to BOINC.
2025-04-16 08:22:04 (14988): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-16 08:22:04 (14988): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 08:22:04 (14988): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 08:22:04 (14988): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 08:22:04 (14988): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 08:22:04 (14988): Detected: Web Application Enabled (http://localhost:61617)
2025-04-16 08:22:04 (14988): Preference change detected
2025-04-16 08:22:04 (14988): Setting CPU throttle for VM. (75%)
2025-04-16 08:22:05 (14988): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 08:22:06 (14988): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 08:22:06 (14988): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 08:22:09 (14988): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 08:22:09 (14988): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 08:22:09 (14988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 08:22:14 (14988): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 08:22:14 (14988): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 08:22:19 (14988): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.000121 main     Log opened 2025-04-16T08:22:17.308780000Z
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.000627 main     OS Product: Linux
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.000665 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.000690 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.000716 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.000717 main     Process ID: 1365
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.000717 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 08:22:19 (14988): Guest Log: 00:00:00.002574 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 08:22:19 (14988): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 08:22:19 (14988): Guest Log: [INFO] Mounting shared directory
2025-04-16 08:22:19 (14988): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 08:22:29 (14988): Guest Log: 00:00:10.009035 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 028 399 000ns (GuestNow=1 744 762 949 284 625 000 ns GuestLast=1 744 791 737 313 024 000 ns fSetTimeLastLoop=true )
2025-04-16 08:22:32 (14988): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 08:22:32 (14988): Guest Log: [INFO] Detected branch: prod
2025-04-16 08:22:33 (14988): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 08:22:33 (14988): Guest Log: Copying input files
2025-04-16 08:22:34 (14988): Guest Log: Copied input files into RunAtlas.
2025-04-16 08:22:34 (14988): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 08:22:34 (14988): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 08:22:34 (14988): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 08:22:34 (14988): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 08:22:49 (14988): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 08:22:49 (14988): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 08:22:49 (14988): Guest Log: 2.6.3.0 1647 0 30168 144908 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 08:22:50 (14988): Guest Log: copied the webapp to /var/www
2025-04-16 08:22:50 (14988): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-16 08:22:50 (14988): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-16 08:22:51 (14988): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 08:22:52 (14988): Guest Log:  *** Starting ATLAS job. (PandaID=6602113166 taskID=44075483) ***
2025-04-16 10:10:07 (14988): Status Report: Elapsed Time: '6002.852898'
2025-04-16 10:10:07 (14988): Status Report: CPU Time: '11754.890625'
2025-04-16 12:01:01 (14988): Status Report: Elapsed Time: '12003.624195'
2025-04-16 12:01:01 (14988): Status Report: CPU Time: '30306.406250'
2025-04-16 12:23:00 (14988): Guest Log:  *** Job finished ***
2025-04-16 12:23:00 (14988): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 12:23:00 (14988): Guest Log: 2025-04-16 04:22:48,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-16 12:23:00 (14988): Guest Log: 2025-04-16 04:22:49,842 | INFO     | [job] queue monitor thread has finished
2025-04-16 12:23:00 (14988): Guest Log: 2025-04-16 04:22:51,425 | INFO     | [data] queue_monitor thread has finished
2025-04-16 12:23:00 (14988): Guest Log: 2025-04-16 04:22:52,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140097699358528)>', '<ExcThread(monitor, started 140097102001920)>']
2025-04-16 12:23:00 (14988): Guest Log: 2025-04-16 04:22:53,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 12:23:00 (14988): Guest Log: 2025-04-16 04:22:53,153 | INFO     | [monitor] control thread has ended
2025-04-16 12:23:00 (14988): Guest Log: 2025-04-16 04:22:57,603 | INFO     | all workflow threads have been joined
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:57,603 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:57,603 | INFO     | traces error code: 0
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:57,603 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:57,688 [wrapper] ==== pilot stdout END ====
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:57,693 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:57,698 [wrapper] pilotpid: 6050
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:57,705 [wrapper] Pilot exit status: 0
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:59,201 [wrapper] pandaids: 6602113166
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:59,277 [wrapper] cleanup supervisor_pilot  6725 6051
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:59,296 [wrapper] Test setup, not cleaning
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:59,301 [wrapper] apfmon messages muted
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:59,305 [wrapper] ==== wrapper stdout END ====
2025-04-16 12:23:01 (14988): Guest Log: 2025-04-16 04:22:59,309 [wrapper] ==== wrapper stderr END ====
2025-04-16 12:23:01 (14988): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 12:23:01 (14988): Guest Log:     "exeErrorCode": 0,
2025-04-16 12:23:01 (14988): Guest Log:     "exeErrorDiag": "",
2025-04-16 12:23:01 (14988): Guest Log:     "pilotErrorCode": 0,
2025-04-16 12:23:01 (14988): Guest Log:     "pilotErrorDiag": "",
2025-04-16 12:23:01 (14988): Guest Log:  *** Listing of results directory ***
2025-04-16 12:23:01 (14988): Guest Log: total 204272
2025-04-16 12:23:01 (14988): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 02:25 pilot3.tar.gz
2025-04-16 12:23:01 (14988): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 02:35 queuedata.json
2025-04-16 12:23:01 (14988): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 02:36 runpilot2-wrapper.sh
2025-04-16 12:23:01 (14988): Guest Log: -rwxr-xr-x. 1 atlas atlas      9181 Apr 16 00:22 init_data.xml
2025-04-16 12:23:01 (14988): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Apr 16 00:22 input.tar.gz
2025-04-16 12:23:01 (14988): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 16 00:22 start_atlas.sh
2025-04-16 12:23:01 (14988): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 00:22 EVNT.44075481._000467.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 12:23:01 (14988): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 16 00:22 pandaJob.out
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 00:23 setup.sh.local
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas    986044 Apr 16 00:28 agis_schedconf.cvmfs.json
2025-04-16 12:23:01 (14988): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 00:29 pilot3
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas 203113745 Apr 16 04:21 HITS.44075483._011869.pool.root.1
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas      1029 Apr 16 04:22 memory_monitor_summary.json
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 04:22 pilot_heartbeat.json
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 04:22 agis_ddmendpoints.agis.ALL.json
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas    344533 Apr 16 04:22 log.44075483._011869.job.log.tgz.1
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas      7724 Apr 16 04:22 heartbeat.json
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 16 04:22 pilotlog.txt
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas    797729 Apr 16 04:22 log.44075483._011869.job.log.1
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 04:22 output.list
2025-04-16 12:23:01 (14988): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 04:22 runtime_log
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas   1157120 Apr 16 04:22 result.tar.gz
2025-04-16 12:23:01 (14988): Guest Log: -rw-r--r--. 1 atlas atlas     10969 Apr 16 04:22 runtime_log.err
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas       663 Apr 16 04:22 5APNDmzrOO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm2KVLDmLj5yDo.diag
2025-04-16 12:23:01 (14988): Guest Log: Looking for outputfile HITS.44075483._011869.pool.root.1
2025-04-16 12:23:01 (14988): Guest Log: HITS file was successfully produced
2025-04-16 12:23:01 (14988): Guest Log: -rw-------. 1 atlas atlas 203113745 Apr 16 04:21 /home/atlas/RunAtlas/HITS.44075483._011869.pool.root.1
2025-04-16 12:23:06 (14988): Guest Log: Successfully finished the ATLAS job!
2025-04-16 12:23:06 (14988): Guest Log: Copying the results back to the shared directory!
2025-04-16 12:23:06 (14988): Guest Log:  *** Contents of shared directory: ***
2025-04-16 12:23:06 (14988): Guest Log: total 416292
2025-04-16 12:23:06 (14988): Guest Log: -rwxrwxrwx. 1 root root 221460569 Apr 16 00:21 ATLAS.root_0
2025-04-16 12:23:06 (14988): Guest Log: -rwxrwxrwx. 1 root root 203113745 Apr 16 04:23 HITS.pool.root.1
2025-04-16 12:23:06 (14988): Guest Log: -rwxrwxrwx. 1 root root      9181 Apr 16 00:21 init_data.xml
2025-04-16 12:23:06 (14988): Guest Log: -rwxrwxrwx. 1 root root    508887 Apr 14 10:21 input.tar.gz
2025-04-16 12:23:06 (14988): Guest Log: -rwxrwxrwx. 1 root root   1157120 Apr 16 04:23 result.tar.gz
2025-04-16 12:23:06 (14988): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 10:21 start_atlas.sh
2025-04-16 12:23:06 (14988): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 12:23:06 (14988): VM Completion File Detected.
2025-04-16 12:23:06 (14988): Powering off VM.
2025-04-16 12:23:11 (14988): Successfully stopped VM.
2025-04-16 12:23:11 (14988): Deregistering VM. (boinc_0b06978243edd9a3, slot#3)
2025-04-16 12:23:15 (14988): Removing network bandwidth throttle group from VM.
2025-04-16 12:23:20 (14988): Removing VM from VirtualBox.
12:23:37 (14988): called boinc_finish(0)

</stderr_txt>
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