Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 06:53:18 (154441): Detected: vboxwrapper 26206
2025-04-14 06:53:18 (154441): Detected: BOINC client v8.0.2
2025-04-14 06:53:19 (154441): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-04-14 06:53:19 (154441): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 06:53:19 (154441): Create VM. (boinc_44adc6f624d3cb8b, slot#1)
2025-04-14 06:53:19 (154441): Setting Memory Size for VM. (4300MB)
2025-04-14 06:53:19 (154441): Setting CPU Count for VM. (3)
2025-04-14 06:53:20 (154441): Setting Chipset Options for VM.
2025-04-14 06:53:20 (154441): Setting Graphics Controller Options for VM.
2025-04-14 06:53:20 (154441): Setting Boot Options for VM.
2025-04-14 06:53:20 (154441): Setting Network Configuration for NAT.
2025-04-14 06:53:20 (154441): Enabling VM Network Access.
2025-04-14 06:53:20 (154441): Disabling USB Support for VM.
2025-04-14 06:53:20 (154441): Disabling COM Port Support for VM.
2025-04-14 06:53:21 (154441): Disabling LPT Port Support for VM.
2025-04-14 06:53:21 (154441): Disabling Audio Support for VM.
2025-04-14 06:53:21 (154441): Disabling Clipboard Support for VM.
2025-04-14 06:53:21 (154441): Disabling Drag and Drop Support for VM.
2025-04-14 06:53:24 (154441): Adding storage controller(s) to VM.
2025-04-14 06:53:24 (154441): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 06:53:26 (154441): Adding VirtualBox Guest Additions to VM.
2025-04-14 06:53:26 (154441): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 06:53:26 (154441): forwarding host port 49391 to guest port 80
2025-04-14 06:53:27 (154441): Enabling remote desktop for VM.
2025-04-14 06:53:27 (154441): Required extension pack not installed, remote desktop not enabled.
2025-04-14 06:53:27 (154441): Enabling shared directory for VM.
2025-04-14 06:53:27 (154441): Starting VM using VBoxManage interface. (boinc_44adc6f624d3cb8b, slot#1)
2025-04-14 06:53:29 (154441): Successfully started VM. (PID = '155039')
2025-04-14 06:53:29 (154441): Reporting VM Process ID to BOINC.
2025-04-14 06:53:29 (154441): Guest Log: BIOS: VirtualBox 7.1.0
2025-04-14 06:53:29 (154441): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 06:53:29 (154441): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 06:53:29 (154441): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 06:53:29 (154441): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 06:53:29 (154441): Detected: Web Application Enabled (http://localhost:49391)
2025-04-14 06:53:29 (154441): Preference change detected
2025-04-14 06:53:29 (154441): Setting CPU throttle for VM. (100%)
2025-04-14 06:53:29 (154441): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 06:53:31 (154441): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 06:53:32 (154441): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 06:53:35 (154441): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 06:53:35 (154441): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 06:53:35 (154441): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 06:53:43 (154441): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 06:53:43 (154441): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 06:54:24 (154441): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.000245 main     Log opened 2025-04-14T13:54:22.239517000Z
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.000380 main     OS Product: Linux
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.001427 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.001475 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.001505 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.001506 main     Process ID: 1312
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.001507 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 06:54:24 (154441): Guest Log: 00:00:00.003327 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 06:54:25 (154441): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 06:54:25 (154441): Guest Log: [INFO] Mounting shared directory
2025-04-14 06:54:25 (154441): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 06:54:31 (154441): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 06:54:31 (154441): Guest Log: [INFO] Detected branch: prod
2025-04-14 06:54:31 (154441): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 06:54:31 (154441): Guest Log: Copying input files
2025-04-14 06:54:32 (154441): Guest Log: Copied input files into RunAtlas.
2025-04-14 06:54:32 (154441): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 06:54:32 (154441): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 06:54:32 (154441): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 06:54:32 (154441): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 06:54:43 (154441): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 06:54:43 (154441): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 06:54:43 (154441): Guest Log: 2.6.3.0 1588 0 30196 144850 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 06:54:47 (154441): Guest Log: copied the webapp to /var/www
2025-04-14 06:54:47 (154441): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-14 06:54:47 (154441): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-14 06:54:48 (154441): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 06:54:48 (154441): Guest Log:  *** Starting ATLAS job. (PandaID=6602118277 taskID=44075483) ***
2025-04-14 08:32:30 (154441): Status Report: Elapsed Time: '6000.000000'
2025-04-14 08:32:30 (154441): Status Report: CPU Time: '14563.840000'
2025-04-14 09:45:00 (154441): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 09:45:19 (154441): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 10:11:52 (154441): Status Report: Elapsed Time: '12000.000000'
2025-04-14 10:11:52 (154441): Status Report: CPU Time: '32289.050000'
2025-04-14 10:49:58 (154441): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 10:50:18 (154441): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 10:56:11 (154441): Guest Log:  *** Job finished ***
2025-04-14 10:56:11 (154441): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:19,229 | INFO     | [data] copytool_in thread has finished
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:19,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:23,653 | INFO     | [data] queue_monitor thread has finished
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:23,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139756461860672)>', '<ExcThread(monitor, started 139755350128384)>']
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:23,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:23,984 | INFO     | [monitor] control thread has ended
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:28,710 | INFO     | all workflow threads have been joined
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:28,710 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:28,711 | INFO     | traces error code: 0
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:28,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:28,982 [wrapper] ==== pilot stdout END ====
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:28,991 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,000 [wrapper] pilotpid: 5896
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,010 [wrapper] Pilot exit status: 0
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,144 [wrapper] pandaids: 6602118277
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,197 [wrapper] cleanup supervisor_pilot 13883 5897
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,216 [wrapper] Test setup, not cleaning
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,227 [wrapper] apfmon messages muted
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,234 [wrapper] ==== wrapper stdout END ====
2025-04-14 10:56:11 (154441): Guest Log: 2025-04-14 17:55:29,244 [wrapper] ==== wrapper stderr END ====
2025-04-14 10:56:11 (154441): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 10:56:11 (154441): Guest Log:     "exeErrorCode": 0,
2025-04-14 10:56:11 (154441): Guest Log:     "exeErrorDiag": "",
2025-04-14 10:56:11 (154441): Guest Log:     "pilotErrorCode": 0,
2025-04-14 10:56:11 (154441): Guest Log:     "pilotErrorDiag": "",
2025-04-14 10:56:11 (154441): Guest Log:  *** Listing of results directory ***
2025-04-14 10:56:11 (154441): Guest Log: total 191664
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 06:08 pilot3.tar.gz
2025-04-14 10:56:11 (154441): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 06:10 runpilot2-wrapper.sh
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 06:10 queuedata.json
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas    508890 Apr 14 13:54 input.tar.gz
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 14 13:54 start_atlas.sh
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas      6473 Apr 14 13:54 init_data.xml
2025-04-14 10:56:11 (154441): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 13:54 EVNT.44075481._000536.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 14 13:54 pandaJob.out
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas       424 Apr 14 13:54 setup.sh.local
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas    986127 Apr 14 13:55 agis_schedconf.cvmfs.json
2025-04-14 10:56:11 (154441): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 13:55 pilot3
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas 189538378 Apr 14 17:54 HITS.44075483._013589.pool.root.1
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas        95 Apr 14 17:54 pilot_heartbeat.json
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas      1031 Apr 14 17:54 memory_monitor_summary.json
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 14 17:55 agis_ddmendpoints.agis.ALL.json
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas    295999 Apr 14 17:55 log.44075483._013589.job.log.tgz.1
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas      7683 Apr 14 17:55 heartbeat.json
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 14 17:55 pilotlog.txt
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas   1179903 Apr 14 17:55 log.44075483._013589.job.log.1
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas       357 Apr 14 17:55 output.list
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 14 17:55 runtime_log
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas   1495040 Apr 14 17:55 result.tar.gz
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas       658 Apr 14 17:55 Bx4NDmjCSO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmncVLDmQ0VWnn.diag
2025-04-14 10:56:11 (154441): Guest Log: -rw-r--r--. 1 atlas atlas     10929 Apr 14 17:55 runtime_log.err
2025-04-14 10:56:11 (154441): Guest Log: Looking for outputfile HITS.44075483._013589.pool.root.1
2025-04-14 10:56:11 (154441): Guest Log: HITS file was successfully produced
2025-04-14 10:56:11 (154441): Guest Log: -rw-------. 1 atlas atlas 189538378 Apr 14 17:54 /home/atlas/RunAtlas/HITS.44075483._013589.pool.root.1
2025-04-14 10:56:12 (154441): Guest Log: Successfully finished the ATLAS job!
2025-04-14 10:56:12 (154441): Guest Log: Copying the results back to the shared directory!
2025-04-14 10:56:12 (154441): Guest Log:  *** Contents of shared directory: ***
2025-04-14 10:56:12 (154441): Guest Log: total 218456
2025-04-14 10:56:12 (154441): Guest Log: -rw-r--r--. 1 root root 221658218 Apr 14 13:53 ATLAS.root_0
2025-04-14 10:56:12 (154441): Guest Log: -rw-r--r--. 1 root root      6473 Apr 14 13:53 init_data.xml
2025-04-14 10:56:12 (154441): Guest Log: -rw-r--r--. 1 root root    508890 Apr 14 13:53 input.tar.gz
2025-04-14 10:56:12 (154441): Guest Log: -rw-r--r--. 1 root root   1495040 Apr 14  2025 result.tar.gz
2025-04-14 10:56:12 (154441): Guest Log: -rw-r--r--. 1 root root     17569 Apr 14 13:53 start_atlas.sh
2025-04-14 10:56:12 (154441): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 10:56:12 (154441): VM Completion File Detected.
2025-04-14 10:56:12 (154441): Powering off VM.
2025-04-14 10:56:14 (154441): Successfully stopped VM.
2025-04-14 10:56:14 (154441): Deregistering VM. (boinc_44adc6f624d3cb8b, slot#1)
2025-04-14 10:56:14 (154441): Removing network bandwidth throttle group from VM.
2025-04-14 10:56:14 (154441): Removing VM from VirtualBox.
10:56:20 (154441): called boinc_finish(0)

</stderr_txt>
]]>

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