Stderr output

<core_client_version>8.2.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 23:27:59 (19268): Detected: vboxwrapper 26206
2025-04-14 23:27:59 (19268): Detected: BOINC client v8.2.0
2025-04-14 23:27:59 (19268): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-14 23:27:59 (19268): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 23:28:00 (19268): Create VM. (boinc_3625cd70d6c13c36, slot#9)
2025-04-14 23:28:00 (19268): Setting Memory Size for VM. (4096MB)
2025-04-14 23:28:01 (19268): Setting CPU Count for VM. (1)
2025-04-14 23:28:01 (19268): Setting Chipset Options for VM.
2025-04-14 23:28:01 (19268): Setting Graphics Controller Options for VM.
2025-04-14 23:28:01 (19268): Setting Boot Options for VM.
2025-04-14 23:28:02 (19268): Setting Network Configuration for NAT.
2025-04-14 23:28:02 (19268): Enabling VM Network Access.
2025-04-14 23:28:02 (19268): Disabling USB Support for VM.
2025-04-14 23:28:02 (19268): Disabling COM Port Support for VM.
2025-04-14 23:28:03 (19268): Disabling LPT Port Support for VM.
2025-04-14 23:28:03 (19268): Disabling Audio Support for VM.
2025-04-14 23:28:03 (19268): Disabling Clipboard Support for VM.
2025-04-14 23:28:03 (19268): Disabling Drag and Drop Support for VM.
2025-04-14 23:28:04 (19268): Adding storage controller(s) to VM.
2025-04-14 23:28:04 (19268): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 23:28:04 (19268): Adding VirtualBox Guest Additions to VM.
2025-04-14 23:28:05 (19268): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 23:28:05 (19268): forwarding host port 65261 to guest port 80
2025-04-14 23:28:05 (19268): Enabling remote desktop for VM.
2025-04-14 23:28:06 (19268): Required extension pack not installed, remote desktop not enabled.
2025-04-14 23:28:06 (19268): Enabling shared directory for VM.
2025-04-14 23:28:06 (19268): Starting VM using VBoxManage interface. (boinc_3625cd70d6c13c36, slot#9)
2025-04-14 23:28:13 (19268): Successfully started VM. (PID = '19488')
2025-04-14 23:28:13 (19268): Reporting VM Process ID to BOINC.
2025-04-14 23:28:13 (19268): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-14 23:28:13 (19268): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 23:28:13 (19268): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 23:28:13 (19268): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 23:28:13 (19268): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 23:28:13 (19268): Detected: Web Application Enabled (http://localhost:65261)
2025-04-14 23:28:13 (19268): Preference change detected
2025-04-14 23:28:13 (19268): Setting CPU throttle for VM. (100%)
2025-04-14 23:28:13 (19268): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 23:28:15 (19268): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 23:28:15 (19268): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 23:28:18 (19268): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 23:28:18 (19268): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 23:28:18 (19268): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 23:28:24 (19268): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 23:28:24 (19268): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 23:28:41 (19268): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.000167 main     Log opened 2025-04-14T23:28:39.997593000Z
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.000295 main     OS Product: Linux
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.000326 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.000350 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.000386 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.000387 main     Process ID: 1255
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.000387 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 23:28:41 (19268): Guest Log: 00:00:00.005418 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 23:28:41 (19268): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 23:28:41 (19268): Guest Log: [INFO] Mounting shared directory
2025-04-14 23:28:41 (19268): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 23:28:45 (19268): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 23:28:45 (19268): Guest Log: [INFO] Detected branch: prod
2025-04-14 23:28:46 (19268): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 23:28:46 (19268): Guest Log: Copying input files
2025-04-14 23:28:48 (19268): Guest Log: Copied input files into RunAtlas.
2025-04-14 23:28:48 (19268): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-14 23:28:51 (19268): Guest Log: 00:00:10.033351 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 176 852 000ns (GuestNow=1 744 666 130 852 904 000 ns GuestLast=1 744 673 320 029 756 000 ns fSetTimeLastLoop=true )
2025-04-14 23:28:55 (19268): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 23:28:55 (19268): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 23:28:55 (19268): Guest Log: 2.6.3.0 1524 0 29516 144864 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-14 23:28:56 (19268): Guest Log: copied the webapp to /var/www
2025-04-14 23:28:56 (19268): Guest Log: core_number=1
2025-04-14 23:28:56 (19268): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 23:28:57 (19268): Guest Log:  *** Starting ATLAS job. (PandaID=6602110492 taskID=44075483) ***
2025-04-15 01:08:18 (19268): Status Report: Elapsed Time: '6000.000000'
2025-04-15 01:08:18 (19268): Status Report: CPU Time: '5032.359375'
2025-04-15 02:48:24 (19268): Status Report: Elapsed Time: '12000.000000'
2025-04-15 02:48:24 (19268): Status Report: CPU Time: '11005.359375'
2025-04-15 04:28:29 (19268): Status Report: Elapsed Time: '18000.000000'
2025-04-15 04:28:29 (19268): Status Report: CPU Time: '16984.984375'
2025-04-15 06:08:34 (19268): Status Report: Elapsed Time: '24000.000000'
2025-04-15 06:08:34 (19268): Status Report: CPU Time: '22967.187500'
2025-04-15 07:48:40 (19268): Status Report: Elapsed Time: '30000.000000'
2025-04-15 07:48:40 (19268): Status Report: CPU Time: '28946.453125'
2025-04-15 09:28:45 (19268): Status Report: Elapsed Time: '36000.000000'
2025-04-15 09:28:45 (19268): Status Report: CPU Time: '34926.656250'
2025-04-15 11:08:51 (19268): Status Report: Elapsed Time: '42000.000000'
2025-04-15 11:08:51 (19268): Status Report: CPU Time: '40907.562500'
2025-04-15 12:48:56 (19268): Status Report: Elapsed Time: '48000.000000'
2025-04-15 12:48:56 (19268): Status Report: CPU Time: '46889.093750'
2025-04-15 13:49:14 (19268): Guest Log:  *** Job finished ***
2025-04-15 13:49:14 (19268): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:03,826 | INFO     | [job] control thread has finished
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:04,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:08,567 | INFO     | [data] queue_monitor thread has finished
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:09,058 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933310232384)>', '<ExcThread(monitor, started 139932651747072)>']
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:09,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:09,358 | INFO     | [monitor] control thread has ended
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,064 | INFO     | all workflow threads have been joined
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,065 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,065 | INFO     | traces error code: 0
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,209 [wrapper] ==== pilot stdout END ====
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,212 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,216 [wrapper] pilotpid: 5794
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,220 [wrapper] Pilot exit status: 0
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,250 [wrapper] pandaids: 6602110492
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,289 [wrapper] cleanup supervisor_pilot  8018 5795
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,294 [wrapper] Test setup, not cleaning
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,301 [wrapper] apfmon messages muted
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,306 [wrapper] ==== wrapper stdout END ====
2025-04-15 13:49:14 (19268): Guest Log: 2025-04-15 11:49:14,311 [wrapper] ==== wrapper stderr END ====
2025-04-15 13:49:14 (19268): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 13:49:14 (19268): Guest Log:     "exeErrorCode": 0,
2025-04-15 13:49:14 (19268): Guest Log:     "exeErrorDiag": "",
2025-04-15 13:49:14 (19268): Guest Log:     "pilotErrorCode": 0,
2025-04-15 13:49:14 (19268): Guest Log:     "pilotErrorDiag": "",
2025-04-15 13:49:14 (19268): Guest Log:  *** Listing of results directory ***
2025-04-15 13:49:14 (19268): Guest Log: total 202840
2025-04-15 13:49:14 (19268): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 01:06 pilot3.tar.gz
2025-04-15 13:49:14 (19268): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 01:35 queuedata.json
2025-04-15 13:49:14 (19268): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 01:36 runpilot2-wrapper.sh
2025-04-15 13:49:14 (19268): Guest Log: -rwxr-xr-x. 1 atlas atlas      9395 Apr 14 21:28 init_data.xml
2025-04-15 13:49:14 (19268): Guest Log: -rwxr-xr-x. 1 atlas atlas    508897 Apr 14 21:28 input.tar.gz
2025-04-15 13:49:14 (19268): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 14 21:28 start_atlas.sh
2025-04-15 13:49:14 (19268): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 21:28 EVNT.44075481._000447.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 13:49:14 (19268): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 14 21:28 pandaJob.out
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas       460 Apr 14 21:28 setup.sh.local
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas    986091 Apr 14 21:29 agis_schedconf.cvmfs.json
2025-04-15 13:49:14 (19268): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 21:29 pilot3
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas 193753057 Apr 15 11:47 HITS.44075483._011367.pool.root.1
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas        95 Apr 15 11:48 pilot_heartbeat.json
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas      1020 Apr 15 11:48 memory_monitor_summary.json
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 11:48 agis_ddmendpoints.agis.ALL.json
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas    608794 Apr 15 11:48 log.44075483._011367.job.log.tgz.1
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas      7671 Apr 15 11:48 heartbeat.json
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 15 11:49 pilotlog.txt
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas   4480662 Apr 15 11:49 log.44075483._011367.job.log.1
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 11:49 output.list
2025-04-15 13:49:14 (19268): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 11:49 runtime_log
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas   5109760 Apr 15 11:49 result.tar.gz
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas       656 Apr 15 11:49 ZlQKDmGvNO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmaDVLDmxh9hKm.diag
2025-04-15 13:49:14 (19268): Guest Log: -rw-r--r--. 1 atlas atlas     11168 Apr 15 11:49 runtime_log.err
2025-04-15 13:49:14 (19268): Guest Log: Looking for outputfile HITS.44075483._011367.pool.root.1
2025-04-15 13:49:14 (19268): Guest Log: HITS file was successfully produced
2025-04-15 13:49:14 (19268): Guest Log: -rw-------. 1 atlas atlas 193753057 Apr 15 11:47 /home/atlas/RunAtlas/HITS.44075483._011367.pool.root.1
2025-04-15 13:49:16 (19268): Guest Log: Successfully finished the ATLAS job!
2025-04-15 13:49:16 (19268): Guest Log: Copying the results back to the shared directory!
2025-04-15 13:49:16 (19268): Guest Log:  *** Contents of shared directory: ***
2025-04-15 13:49:16 (19268): Guest Log: total 416820
2025-04-15 13:49:16 (19268): Guest Log: -rwxrwxrwx. 1 root root 227412857 Apr 14 21:27 ATLAS.root_0
2025-04-15 13:49:16 (19268): Guest Log: -rwxrwxrwx. 1 root root 193753057 Apr 15 11:49 HITS.pool.root.1
2025-04-15 13:49:16 (19268): Guest Log: -rwxrwxrwx. 1 root root      9395 Apr 14 21:27 init_data.xml
2025-04-15 13:49:16 (19268): Guest Log: -rwxrwxrwx. 1 root root    508897 Apr 14 09:46 input.tar.gz
2025-04-15 13:49:16 (19268): Guest Log: -rwxrwxrwx. 1 root root   5109760 Apr 15 11:49 result.tar.gz
2025-04-15 13:49:16 (19268): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 09:46 start_atlas.sh
2025-04-15 13:49:16 (19268): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 13:49:16 (19268): VM Completion File Detected.
2025-04-15 13:49:16 (19268): Powering off VM.
2025-04-15 13:49:18 (19268): Successfully stopped VM.
2025-04-15 13:49:18 (19268): Deregistering VM. (boinc_3625cd70d6c13c36, slot#9)
2025-04-15 13:49:18 (19268): Removing network bandwidth throttle group from VM.
2025-04-15 13:49:18 (19268): Removing VM from VirtualBox.
13:49:23 (19268): called boinc_finish(0)

</stderr_txt>
]]>

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