Stderr output

<core_client_version>8.2.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 11:10:05 (10556): Detected: vboxwrapper 26206
2025-04-14 11:10:05 (10556): Detected: BOINC client v8.2.0
2025-04-14 11:10:05 (10556): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-14 11:10:06 (10556): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 11:10:06 (10556): Create VM. (boinc_f6fa4334b3f2a210, slot#6)
2025-04-14 11:10:07 (10556): Setting Memory Size for VM. (4096MB)
2025-04-14 11:10:07 (10556): Setting CPU Count for VM. (1)
2025-04-14 11:10:07 (10556): Setting Chipset Options for VM.
2025-04-14 11:10:08 (10556): Setting Graphics Controller Options for VM.
2025-04-14 11:10:08 (10556): Setting Boot Options for VM.
2025-04-14 11:10:08 (10556): Setting Network Configuration for NAT.
2025-04-14 11:10:08 (10556): Enabling VM Network Access.
2025-04-14 11:10:09 (10556): Disabling USB Support for VM.
2025-04-14 11:10:09 (10556): Disabling COM Port Support for VM.
2025-04-14 11:10:09 (10556): Disabling LPT Port Support for VM.
2025-04-14 11:10:09 (10556): Disabling Audio Support for VM.
2025-04-14 11:10:10 (10556): Disabling Clipboard Support for VM.
2025-04-14 11:10:10 (10556): Disabling Drag and Drop Support for VM.
2025-04-14 11:10:10 (10556): Adding storage controller(s) to VM.
2025-04-14 11:10:10 (10556): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 11:10:11 (10556): Adding VirtualBox Guest Additions to VM.
2025-04-14 11:10:11 (10556): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 11:10:11 (10556): forwarding host port 63463 to guest port 80
2025-04-14 11:10:12 (10556): Enabling remote desktop for VM.
2025-04-14 11:10:12 (10556): Required extension pack not installed, remote desktop not enabled.
2025-04-14 11:10:12 (10556): Enabling shared directory for VM.
2025-04-14 11:10:12 (10556): Starting VM using VBoxManage interface. (boinc_f6fa4334b3f2a210, slot#6)
2025-04-14 11:10:19 (10556): Successfully started VM. (PID = '7896')
2025-04-14 11:10:19 (10556): Reporting VM Process ID to BOINC.
2025-04-14 11:10:19 (10556): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-14 11:10:19 (10556): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 11:10:19 (10556): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 11:10:19 (10556): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 11:10:19 (10556): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 11:10:19 (10556): Detected: Web Application Enabled (http://localhost:63463)
2025-04-14 11:10:19 (10556): Preference change detected
2025-04-14 11:10:19 (10556): Setting CPU throttle for VM. (100%)
2025-04-14 11:10:19 (10556): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 11:10:21 (10556): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 11:10:21 (10556): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 11:10:24 (10556): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 11:10:24 (10556): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 11:10:24 (10556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 11:10:31 (10556): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 11:10:31 (10556): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 11:10:48 (10556): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.000197 main     Log opened 2025-04-14T11:10:46.507917000Z
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.000375 main     OS Product: Linux
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.000429 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.000471 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.000512 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.000513 main     Process ID: 1253
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.000514 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 11:10:48 (10556): Guest Log: 00:00:00.006755 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 11:10:48 (10556): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 11:10:48 (10556): Guest Log: [INFO] Mounting shared directory
2025-04-14 11:10:48 (10556): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 11:10:50 (10556): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 11:10:50 (10556): Guest Log: [INFO] Detected branch: prod
2025-04-14 11:10:50 (10556): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 11:10:50 (10556): Guest Log: Copying input files
2025-04-14 11:10:52 (10556): Guest Log: Copied input files into RunAtlas.
2025-04-14 11:10:52 (10556): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-14 11:10:58 (10556): Guest Log: 00:00:10.029751 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 514 147 000ns (GuestNow=1 744 621 858 021 571 000 ns GuestLast=1 744 629 046 535 718 000 ns fSetTimeLastLoop=true )
2025-04-14 11:11:00 (10556): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 11:11:00 (10556): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 11:11:00 (10556): Guest Log: 2.6.3.0 1522 0 29508 144843 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-14 11:11:01 (10556): Guest Log: copied the webapp to /var/www
2025-04-14 11:11:01 (10556): Guest Log: core_number=1
2025-04-14 11:11:01 (10556): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 11:11:01 (10556): Guest Log:  *** Starting ATLAS job. (PandaID=6600759492 taskID=44075164) ***
2025-04-14 12:50:25 (10556): Status Report: Elapsed Time: '6000.000000'
2025-04-14 12:50:25 (10556): Status Report: CPU Time: '5228.640625'
2025-04-14 14:30:30 (10556): Status Report: Elapsed Time: '12000.000000'
2025-04-14 14:30:30 (10556): Status Report: CPU Time: '11208.218750'
2025-04-14 16:10:35 (10556): Status Report: Elapsed Time: '18000.000000'
2025-04-14 16:10:35 (10556): Status Report: CPU Time: '17189.203125'
2025-04-14 17:50:41 (10556): Status Report: Elapsed Time: '24000.000000'
2025-04-14 17:50:41 (10556): Status Report: CPU Time: '23170.796875'
2025-04-14 19:30:47 (10556): Status Report: Elapsed Time: '30000.000000'
2025-04-14 19:30:47 (10556): Status Report: CPU Time: '29150.468750'
2025-04-14 21:10:52 (10556): Status Report: Elapsed Time: '36000.000000'
2025-04-14 21:10:52 (10556): Status Report: CPU Time: '35130.296875'
2025-04-14 22:50:57 (10556): Status Report: Elapsed Time: '42000.000000'
2025-04-14 22:50:57 (10556): Status Report: CPU Time: '41108.359375'
2025-04-15 00:31:03 (10556): Status Report: Elapsed Time: '48000.000000'
2025-04-15 00:31:03 (10556): Status Report: CPU Time: '47086.046875'
2025-04-15 01:40:52 (10556): Guest Log:  *** Job finished ***
2025-04-15 01:40:52 (10556): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:36,287 | INFO     | [data] queue_monitor thread has finished
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:43,006 | INFO     | job.realtimelogging is not enabled
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:44,008 | INFO     | [payload] run_realtimelog thread has finished
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:45,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159923615552)>', '<ExcThread(monitor, started 140159337096960)>']
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:46,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:46,126 | INFO     | [monitor] control thread has ended
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:50,967 | INFO     | all workflow threads have been joined
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:50,968 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:50,968 | INFO     | traces error code: 0
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:50,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,112 [wrapper] ==== pilot stdout END ====
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,116 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,122 [wrapper] pilotpid: 5793
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,127 [wrapper] Pilot exit status: 0
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,153 [wrapper] pandaids: 6600759492
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,177 [wrapper] cleanup supervisor_pilot  7981 5794
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,180 [wrapper] Test setup, not cleaning
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,184 [wrapper] apfmon messages muted
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,189 [wrapper] ==== wrapper stdout END ====
2025-04-15 01:40:52 (10556): Guest Log: 2025-04-14 23:40:51,195 [wrapper] ==== wrapper stderr END ====
2025-04-15 01:40:52 (10556): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 01:40:52 (10556): Guest Log:     "exeErrorCode": 0,
2025-04-15 01:40:52 (10556): Guest Log:     "exeErrorDiag": "",
2025-04-15 01:40:52 (10556): Guest Log:     "pilotErrorCode": 0,
2025-04-15 01:40:52 (10556): Guest Log:     "pilotErrorDiag": "",
2025-04-15 01:40:52 (10556): Guest Log:  *** Listing of results directory ***
2025-04-15 01:40:52 (10556): Guest Log: total 201892
2025-04-15 01:40:52 (10556): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 13 06:47 pilot3.tar.gz
2025-04-15 01:40:52 (10556): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 13 06:51 queuedata.json
2025-04-15 01:40:52 (10556): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 13 06:53 runpilot2-wrapper.sh
2025-04-15 01:40:52 (10556): Guest Log: -rwxr-xr-x. 1 atlas atlas      9395 Apr 14 09:10 init_data.xml
2025-04-15 01:40:52 (10556): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 Apr 14 09:10 input.tar.gz
2025-04-15 01:40:52 (10556): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 14 09:10 start_atlas.sh
2025-04-15 01:40:52 (10556): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 09:10 EVNT.44075162._002029.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 01:40:52 (10556): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 14 09:11 pandaJob.out
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas       460 Apr 14 09:11 setup.sh.local
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas    981874 Apr 14 09:11 agis_schedconf.cvmfs.json
2025-04-15 01:40:52 (10556): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 09:11 pilot3
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas 192663109 Apr 14 23:39 HITS.44075164._054473.pool.root.1
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas        95 Apr 14 23:39 pilot_heartbeat.json
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas      1022 Apr 14 23:40 memory_monitor_summary.json
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 14 23:40 agis_ddmendpoints.agis.ALL.json
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas    634694 Apr 14 23:40 log.44075164._054473.job.log.tgz.1
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas      7682 Apr 14 23:40 heartbeat.json
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas      4485 Apr 14 23:40 pilotlog.txt
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas   4515833 Apr 14 23:40 log.44075164._054473.job.log.1
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas       357 Apr 14 23:40 output.list
2025-04-15 01:40:52 (10556): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 14 23:40 runtime_log
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas   5171200 Apr 14 23:40 result.tar.gz
2025-04-15 01:40:52 (10556): Guest Log: -rw-r--r--. 1 atlas atlas     11168 Apr 14 23:40 runtime_log.err
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas       656 Apr 14 23:40 iKzNDmfO6N7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmjJTLDmvTYv0n.diag
2025-04-15 01:40:52 (10556): Guest Log: Looking for outputfile HITS.44075164._054473.pool.root.1
2025-04-15 01:40:52 (10556): Guest Log: HITS file was successfully produced
2025-04-15 01:40:52 (10556): Guest Log: -rw-------. 1 atlas atlas 192663109 Apr 14 23:39 /home/atlas/RunAtlas/HITS.44075164._054473.pool.root.1
2025-04-15 01:40:53 (10556): Guest Log: Successfully finished the ATLAS job!
2025-04-15 01:40:53 (10556): Guest Log: Copying the results back to the shared directory!
2025-04-15 01:40:54 (10556): Guest Log:  *** Contents of shared directory: ***
2025-04-15 01:40:54 (10556): Guest Log: total 408964
2025-04-15 01:40:54 (10556): Guest Log: -rwxrwxrwx. 1 root root 220393563 Apr 14 09:10 ATLAS.root_0
2025-04-15 01:40:54 (10556): Guest Log: -rwxrwxrwx. 1 root root 192663109 Apr 14 23:40 HITS.pool.root.1
2025-04-15 01:40:54 (10556): Guest Log: -rwxrwxrwx. 1 root root      9395 Apr 14 09:10 init_data.xml
2025-04-15 01:40:54 (10556): Guest Log: -rwxrwxrwx. 1 root root    508880 Apr 14 08:47 input.tar.gz
2025-04-15 01:40:54 (10556): Guest Log: -rwxrwxrwx. 1 root root   5171200 Apr 14 23:40 result.tar.gz
2025-04-15 01:40:54 (10556): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 08:47 start_atlas.sh
2025-04-15 01:40:54 (10556): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 01:40:54 (10556): VM Completion File Detected.
2025-04-15 01:40:54 (10556): Powering off VM.
2025-04-15 01:40:55 (10556): Successfully stopped VM.
2025-04-15 01:40:55 (10556): Deregistering VM. (boinc_f6fa4334b3f2a210, slot#6)
2025-04-15 01:40:55 (10556): Removing network bandwidth throttle group from VM.
2025-04-15 01:40:55 (10556): Removing VM from VirtualBox.
01:41:00 (10556): called boinc_finish(0)

</stderr_txt>
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