Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 17:06:15 (14250): Detected: vboxwrapper 26206
2025-04-14 17:06:15 (14250): Detected: BOINC client v8.0.2
2025-04-14 17:06:16 (14250): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-14 17:06:16 (14250): Detected: Sandbox Configuration Enabled
2025-04-14 17:06:17 (14250): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 17:06:18 (14250): Create VM. (boinc_48713632f976fb04, slot#0)
2025-04-14 17:06:19 (14250): Setting Memory Size for VM. (4400MB)
2025-04-14 17:06:19 (14250): Setting CPU Count for VM. (4)
2025-04-14 17:06:20 (14250): Setting Chipset Options for VM.
2025-04-14 17:06:20 (14250): Setting Graphics Controller Options for VM.
2025-04-14 17:06:21 (14250): Setting Boot Options for VM.
2025-04-14 17:06:21 (14250): Setting Network Configuration for NAT.
2025-04-14 17:06:21 (14250): Enabling VM Network Access.
2025-04-14 17:06:22 (14250): Disabling USB Support for VM.
2025-04-14 17:06:22 (14250): Disabling COM Port Support for VM.
2025-04-14 17:06:23 (14250): Disabling Audio Support for VM.
2025-04-14 17:06:23 (14250): Disabling Clipboard Support for VM.
2025-04-14 17:06:24 (14250): Disabling Drag and Drop Support for VM.
2025-04-14 17:06:24 (14250): Adding storage controller(s) to VM.
2025-04-14 17:06:25 (14250): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 17:06:26 (14250): Adding VirtualBox Guest Additions to VM.
2025-04-14 17:06:27 (14250): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 17:06:27 (14250): forwarding host port 49214 to guest port 80
2025-04-14 17:06:28 (14250): Enabling remote desktop for VM.
2025-04-14 17:06:28 (14250): Required extension pack not installed, remote desktop not enabled.
2025-04-14 17:06:28 (14250): Enabling shared directory for VM.
2025-04-14 17:06:29 (14250): Starting VM using VBoxManage interface. (boinc_48713632f976fb04, slot#0)
2025-04-14 17:06:36 (14250): Successfully started VM. (PID = '14477')
2025-04-14 17:06:36 (14250): Reporting VM Process ID to BOINC.
2025-04-14 17:06:36 (14250): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-14 17:06:36 (14250): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 17:06:36 (14250): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 17:06:36 (14250): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 17:06:36 (14250): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 17:06:36 (14250): Detected: Web Application Enabled (http://localhost:49214)
2025-04-14 17:06:36 (14250): Preference change detected
2025-04-14 17:06:36 (14250): Setting CPU throttle for VM. (100%)
2025-04-14 17:06:37 (14250): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 17:06:38 (14250): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 17:06:38 (14250): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 17:06:42 (14250): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 17:06:42 (14250): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 17:06:42 (14250): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 17:06:51 (14250): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 17:06:51 (14250): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 17:07:01 (14250): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.000220 main     Log opened 2025-04-14T07:06:59.714925000Z
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.000385 main     OS Product: Linux
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.000462 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.000533 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.000606 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.000608 main     Process ID: 1311
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.000609 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 17:07:01 (14250): Guest Log: 00:00:00.003937 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 17:07:02 (14250): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 17:07:02 (14250): Guest Log: [INFO] Mounting shared directory
2025-04-14 17:07:02 (14250): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 17:07:17 (14250): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 17:07:17 (14250): Guest Log: [INFO] Detected branch: prod
2025-04-14 17:07:17 (14250): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 17:07:17 (14250): Guest Log: Copying input files
2025-04-14 17:07:22 (14250): Guest Log: Copied input files into RunAtlas.
2025-04-14 17:07:22 (14250): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 17:07:22 (14250): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 17:07:22 (14250): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 17:07:22 (14250): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 17:07:39 (14250): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 17:07:40 (14250): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 17:07:40 (14250): Guest Log: 2.6.3.0 1608 0 30172 144839 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 17:07:41 (14250): Guest Log: copied the webapp to /var/www
2025-04-14 17:07:41 (14250): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-14 17:07:41 (14250): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-14 17:07:43 (14250): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 17:07:43 (14250): Guest Log:  *** Starting ATLAS job. (PandaID=6600722675 taskID=44075164) ***
2025-04-14 17:26:10 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 17:29:37 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 17:33:57 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 17:36:58 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 17:43:58 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 17:47:00 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 18:03:03 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 18:06:18 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 18:59:34 (14250): Status Report: Elapsed Time: '6000.869338'
2025-04-14 18:59:34 (14250): Status Report: CPU Time: '16845.750000'
2025-04-14 19:56:16 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 19:59:28 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 20:42:57 (14250): Status Report: Elapsed Time: '12001.364958'
2025-04-14 20:42:57 (14250): Status Report: CPU Time: '39806.380000'
2025-04-14 20:45:55 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 20:48:55 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 21:06:35 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 21:09:41 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 21:24:11 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 21:27:12 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 22:18:00 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 22:21:01 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 22:35:17 (14250): Status Report: Elapsed Time: '18002.357824'
2025-04-14 22:35:17 (14250): Status Report: CPU Time: '62999.570000'
2025-04-14 23:08:50 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 23:11:51 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 23:21:13 (14250): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 23:27:44 (14250): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 00:06:03 (14250): Guest Log:  *** Job finished ***
2025-04-15 00:06:03 (14250): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:06,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:07,606 | INFO     | [job] queue monitor thread has finished
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:07,723 | INFO     | [data] queue_monitor thread has finished
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:09,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139738414659392)>', '<ExcThread(monitor, started 139737742427904)>']
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:09,666 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:09,666 | INFO     | [monitor] control thread has ended
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,022 | INFO     | all workflow threads have been joined
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,022 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,022 | INFO     | traces error code: 0
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,215 [wrapper] ==== pilot stdout END ====
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,230 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,263 [wrapper] pilotpid: 5950
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,290 [wrapper] Pilot exit status: 0
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:14,935 [wrapper] pandaids: 6600722675
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:15,075 [wrapper] cleanup supervisor_pilot 21531 5951
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:15,086 [wrapper] Test setup, not cleaning
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:15,101 [wrapper] apfmon messages muted
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:15,123 [wrapper] ==== wrapper stdout END ====
2025-04-15 00:06:03 (14250): Guest Log: 2025-04-14 13:50:15,145 [wrapper] ==== wrapper stderr END ====
2025-04-15 00:06:03 (14250): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 00:06:03 (14250): Guest Log:     "exeErrorCode": 0,
2025-04-15 00:06:03 (14250): Guest Log:     "exeErrorDiag": "",
2025-04-15 00:06:03 (14250): Guest Log:     "pilotErrorCode": 0,
2025-04-15 00:06:03 (14250): Guest Log:     "pilotErrorDiag": "",
2025-04-15 00:06:03 (14250): Guest Log:  *** Listing of results directory ***
2025-04-15 00:06:03 (14250): Guest Log: total 199116
2025-04-15 00:06:03 (14250): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 13 05:05 pilot3.tar.gz
2025-04-15 00:06:03 (14250): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 13 05:49 runpilot2-wrapper.sh
2025-04-15 00:06:03 (14250): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 13 05:49 queuedata.json
2025-04-15 00:06:03 (14250): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 14 07:07 start_atlas.sh
2025-04-15 00:06:03 (14250): Guest Log: -rw-r-----. 1 atlas atlas    508881 Apr 14 07:07 input.tar.gz
2025-04-15 00:06:03 (14250): Guest Log: -rw-r--r--. 1 atlas atlas      6165 Apr 14 07:07 init_data.xml
2025-04-15 00:06:03 (14250): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 07:07 EVNT.44075162._002141.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 00:06:03 (14250): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 14 07:07 pandaJob.out
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas       424 Apr 14 07:07 setup.sh.local
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas    981870 Apr 14 07:10 agis_schedconf.cvmfs.json
2025-04-15 00:06:03 (14250): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 07:11 pilot3
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas 196583351 Apr 14 13:48 HITS.44075164._053885.pool.root.1
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas      1032 Apr 14 13:49 memory_monitor_summary.json
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 14 13:49 agis_ddmendpoints.agis.ALL.json
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas    368852 Apr 14 13:49 log.44075164._053885.job.log.tgz.1
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas        97 Apr 14 13:49 pilot_heartbeat.json
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas      7705 Apr 14 13:50 heartbeat.json
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 14 13:50 pilotlog.txt
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas   1399928 Apr 14 13:50 log.44075164._053885.job.log.1
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas       357 Apr 14 13:50 output.list
2025-04-15 00:06:03 (14250): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 14 13:50 runtime_log
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas   1792000 Apr 14 13:50 result.tar.gz
2025-04-15 00:06:03 (14250): Guest Log: -rw-r--r--. 1 atlas atlas     10962 Apr 14 13:50 runtime_log.err
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas       669 Apr 14 13:50 8cENDmmO5N7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmnCTLDmzYpxxn.diag
2025-04-15 00:06:03 (14250): Guest Log: Looking for outputfile HITS.44075164._053885.pool.root.1
2025-04-15 00:06:03 (14250): Guest Log: HITS file was successfully produced
2025-04-15 00:06:03 (14250): Guest Log: -rw-------. 1 atlas atlas 196583351 Apr 14 13:48 /home/atlas/RunAtlas/HITS.44075164._053885.pool.root.1
2025-04-15 00:06:03 (14250): Guest Log: Successfully finished the ATLAS job!
2025-04-15 00:06:03 (14250): Guest Log: Copying the results back to the shared directory!
2025-04-15 00:06:04 (14250): Guest Log:  *** Contents of shared directory: ***
2025-04-15 00:06:04 (14250): Guest Log: total 225704
2025-04-15 00:06:04 (14250): Guest Log: -rw-rw----. 1 root root 220055018 Apr 14 07:06 ATLAS.root_0
2025-04-15 00:06:04 (14250): Guest Log: -rw-rw-r--. 1 root root      6165 Apr 14 07:06 init_data.xml
2025-04-15 00:06:04 (14250): Guest Log: -rw-rw----. 1 root root    508881 Apr 14 07:06 input.tar.gz
2025-04-15 00:06:04 (14250): Guest Log: -rw-r--r--. 1 root root   1792000 Apr 14  2025 result.tar.gz
2025-04-15 00:06:04 (14250): Guest Log: -rw-rw----. 1 root root     17569 Apr 14 07:06 start_atlas.sh
2025-04-15 00:06:04 (14250): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 00:06:04 (14250): VM Completion File Detected.
2025-04-15 00:06:04 (14250): Powering off VM.
2025-04-15 00:06:06 (14250): Successfully stopped VM.
2025-04-15 00:06:06 (14250): Deregistering VM. (boinc_48713632f976fb04, slot#0)
2025-04-15 00:06:06 (14250): Removing network bandwidth throttle group from VM.
2025-04-15 00:06:07 (14250): Removing VM from VirtualBox.
00:06:13 (14250): called boinc_finish(0)

</stderr_txt>
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