Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 08:41:38 (75870): Detected: vboxwrapper 26206
2025-04-15 08:41:38 (75870): Detected: BOINC client v8.0.2
2025-04-15 08:41:39 (75870): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-15 08:41:39 (75870): Detected: Sandbox Configuration Enabled
2025-04-15 08:41:40 (75870): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 08:41:41 (75870): Create VM. (boinc_56155856eb6f9dca, slot#0)
2025-04-15 08:41:41 (75870): Setting Memory Size for VM. (4400MB)
2025-04-15 08:41:42 (75870): Setting CPU Count for VM. (4)
2025-04-15 08:41:42 (75870): Setting Chipset Options for VM.
2025-04-15 08:41:43 (75870): Setting Graphics Controller Options for VM.
2025-04-15 08:41:43 (75870): Setting Boot Options for VM.
2025-04-15 08:41:43 (75870): Setting Network Configuration for NAT.
2025-04-15 08:41:44 (75870): Enabling VM Network Access.
2025-04-15 08:41:44 (75870): Disabling USB Support for VM.
2025-04-15 08:41:45 (75870): Disabling COM Port Support for VM.
2025-04-15 08:41:45 (75870): Disabling Audio Support for VM.
2025-04-15 08:41:45 (75870): Disabling Clipboard Support for VM.
2025-04-15 08:41:46 (75870): Disabling Drag and Drop Support for VM.
2025-04-15 08:41:46 (75870): Adding storage controller(s) to VM.
2025-04-15 08:41:47 (75870): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 08:41:51 (75870): Adding VirtualBox Guest Additions to VM.
2025-04-15 08:41:51 (75870): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 08:41:51 (75870): forwarding host port 51188 to guest port 80
2025-04-15 08:41:52 (75870): Enabling remote desktop for VM.
2025-04-15 08:41:52 (75870): Required extension pack not installed, remote desktop not enabled.
2025-04-15 08:41:52 (75870): Enabling shared directory for VM.
2025-04-15 08:41:53 (75870): Starting VM using VBoxManage interface. (boinc_56155856eb6f9dca, slot#0)
2025-04-15 08:41:58 (75870): Successfully started VM. (PID = '75954')
2025-04-15 08:41:58 (75870): Reporting VM Process ID to BOINC.
2025-04-15 08:41:58 (75870): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-15 08:41:58 (75870): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 08:41:58 (75870): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 08:41:58 (75870): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 08:41:58 (75870): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 08:41:58 (75870): Detected: Web Application Enabled (http://localhost:51188)
2025-04-15 08:41:58 (75870): Preference change detected
2025-04-15 08:41:58 (75870): Setting CPU throttle for VM. (100%)
2025-04-15 08:41:58 (75870): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 08:42:00 (75870): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 08:42:00 (75870): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 08:42:04 (75870): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 08:42:04 (75870): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 08:42:04 (75870): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 08:42:13 (75870): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 08:42:13 (75870): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 08:42:25 (75870): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.000192 main     Log opened 2025-04-14T22:42:23.505982000Z
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.000343 main     OS Product: Linux
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.000409 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.000471 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.000534 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.000535 main     Process ID: 1310
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.000536 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 08:42:25 (75870): Guest Log: 00:00:00.002677 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 08:42:25 (75870): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 08:42:25 (75870): Guest Log: [INFO] Mounting shared directory
2025-04-15 08:42:25 (75870): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 08:42:41 (75870): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 08:42:41 (75870): Guest Log: [INFO] Detected branch: prod
2025-04-15 08:42:41 (75870): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 08:42:41 (75870): Guest Log: Copying input files
2025-04-15 08:42:46 (75870): Guest Log: Copied input files into RunAtlas.
2025-04-15 08:42:46 (75870): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-15 08:42:46 (75870): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-15 08:42:46 (75870): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-15 08:42:46 (75870): Guest Log: Further information can be found at the LHC@home message board.
2025-04-15 08:43:05 (75870): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 08:43:06 (75870): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 08:43:06 (75870): Guest Log: 2.6.3.0 1588 0 32380 144867 4 1 3119946 4096000 0 65024 0 0 n/a 1171 179 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-15 08:43:07 (75870): Guest Log: copied the webapp to /var/www
2025-04-15 08:43:07 (75870): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-15 08:43:07 (75870): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-15 08:43:09 (75870): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 08:43:09 (75870): Guest Log:  *** Starting ATLAS job. (PandaID=6602113229 taskID=44075483) ***
2025-04-15 08:49:01 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 08:53:46 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 09:14:08 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 09:17:09 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 09:34:03 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 09:41:24 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 10:37:16 (75870): Status Report: Elapsed Time: '6000.090065'
2025-04-15 10:37:16 (75870): Status Report: CPU Time: '16510.290000'
2025-04-15 12:17:33 (75870): Status Report: Elapsed Time: '12000.518346'
2025-04-15 12:17:33 (75870): Status Report: CPU Time: '35838.190000'
2025-04-15 13:57:51 (75870): Status Report: Elapsed Time: '18000.665189'
2025-04-15 13:57:51 (75870): Status Report: CPU Time: '55629.390000'
2025-04-15 14:00:03 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:03:10 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 14:26:04 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 14:29:04 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 15:00:28 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 15:03:28 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 15:47:16 (75870): Status Report: Elapsed Time: '24001.232744'
2025-04-15 15:47:16 (75870): Status Report: CPU Time: '78159.780000'
2025-04-15 16:06:42 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 16:11:48 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 16:16:55 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 16:19:54 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 17:35:40 (75870): Status Report: Elapsed Time: '30001.467165'
2025-04-15 17:35:40 (75870): Status Report: CPU Time: '100097.740000'
2025-04-15 17:48:50 (75870): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 17:51:50 (75870): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 18:00:30 (75870): Guest Log:  *** Job finished ***
2025-04-15 18:00:30 (75870): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:11,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:12,892 | INFO     | [job] queue monitor thread has finished
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:12,989 | INFO     | [data] queue_monitor thread has finished
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:14,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976481998656)>', '<ExcThread(monitor, started 139976029218560)>']
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:14,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:14,982 | INFO     | [monitor] control thread has ended
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,552 | INFO     | all workflow threads have been joined
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,553 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,553 | INFO     | traces error code: 0
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,553 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,665 [wrapper] ==== pilot stdout END ====
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,678 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,691 [wrapper] pilotpid: 5949
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:19,704 [wrapper] Pilot exit status: 0
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:20,302 [wrapper] pandaids: 6602113229
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:20,384 [wrapper] cleanup supervisor_pilot 28888 5950
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:20,395 [wrapper] Test setup, not cleaning
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:20,408 [wrapper] apfmon messages muted
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:20,422 [wrapper] ==== wrapper stdout END ====
2025-04-15 18:00:30 (75870): Guest Log: 2025-04-15 07:46:20,436 [wrapper] ==== wrapper stderr END ====
2025-04-15 18:00:30 (75870): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 18:00:30 (75870): Guest Log:     "exeErrorCode": 0,
2025-04-15 18:00:30 (75870): Guest Log:     "exeErrorDiag": "",
2025-04-15 18:00:30 (75870): Guest Log:     "pilotErrorCode": 0,
2025-04-15 18:00:30 (75870): Guest Log:     "pilotErrorDiag": "",
2025-04-15 18:00:30 (75870): Guest Log:  *** Listing of results directory ***
2025-04-15 18:00:30 (75870): Guest Log: total 199288
2025-04-15 18:00:30 (75870): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 02:25 pilot3.tar.gz
2025-04-15 18:00:30 (75870): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 02:44 runpilot2-wrapper.sh
2025-04-15 18:00:30 (75870): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 02:44 queuedata.json
2025-04-15 18:00:30 (75870): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 14 22:42 start_atlas.sh
2025-04-15 18:00:30 (75870): Guest Log: -rw-r-----. 1 atlas atlas    508892 Apr 14 22:42 input.tar.gz
2025-04-15 18:00:30 (75870): Guest Log: -rw-r--r--. 1 atlas atlas      6161 Apr 14 22:42 init_data.xml
2025-04-15 18:00:30 (75870): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 22:42 EVNT.44075481._000469.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 18:00:30 (75870): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 14 22:43 pandaJob.out
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas       424 Apr 14 22:43 setup.sh.local
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas    986091 Apr 14 22:46 agis_schedconf.cvmfs.json
2025-04-15 18:00:30 (75870): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 22:47 pilot3
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas 195605226 Apr 15 07:44 HITS.44075483._011932.pool.root.1
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas      1032 Apr 15 07:45 memory_monitor_summary.json
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 07:45 agis_ddmendpoints.agis.ALL.json
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas    423509 Apr 15 07:45 log.44075483._011932.job.log.tgz.1
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas        97 Apr 15 07:45 pilot_heartbeat.json
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas      7698 Apr 15 07:46 heartbeat.json
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas      4729 Apr 15 07:46 pilotlog.txt
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas   1917645 Apr 15 07:46 log.44075483._011932.job.log.1
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 07:46 output.list
2025-04-15 18:00:30 (75870): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 07:46 runtime_log
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas   2365440 Apr 15 07:46 result.tar.gz
2025-04-15 18:00:30 (75870): Guest Log: -rw-r--r--. 1 atlas atlas     10962 Apr 15 07:46 runtime_log.err
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas       671 Apr 15 07:46 d4eMDmyyOO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmOLVLDmYV2Qen.diag
2025-04-15 18:00:30 (75870): Guest Log: Looking for outputfile HITS.44075483._011932.pool.root.1
2025-04-15 18:00:30 (75870): Guest Log: HITS file was successfully produced
2025-04-15 18:00:30 (75870): Guest Log: -rw-------. 1 atlas atlas 195605226 Apr 15 07:44 /home/atlas/RunAtlas/HITS.44075483._011932.pool.root.1
2025-04-15 18:00:30 (75870): Guest Log: Successfully finished the ATLAS job!
2025-04-15 18:00:30 (75870): Guest Log: Copying the results back to the shared directory!
2025-04-15 18:00:30 (75870): Guest Log:  *** Contents of shared directory: ***
2025-04-15 18:00:30 (75870): Guest Log: total 226776
2025-04-15 18:00:30 (75870): Guest Log: -rw-rw----. 1 root root 225524813 Apr 14 22:41 ATLAS.root_0
2025-04-15 18:00:30 (75870): Guest Log: -rw-rw-r--. 1 root root      6161 Apr 14 22:41 init_data.xml
2025-04-15 18:00:30 (75870): Guest Log: -rw-rw----. 1 root root    508892 Apr 14 22:41 input.tar.gz
2025-04-15 18:00:30 (75870): Guest Log: -rw-r--r--. 1 root root   2365440 Apr 15  2025 result.tar.gz
2025-04-15 18:00:30 (75870): Guest Log: -rw-rw----. 1 root root     17569 Apr 14 22:41 start_atlas.sh
2025-04-15 18:00:30 (75870): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 18:00:30 (75870): VM Completion File Detected.
2025-04-15 18:00:30 (75870): Powering off VM.
2025-04-15 18:00:31 (75870): Successfully stopped VM.
2025-04-15 18:00:31 (75870): Deregistering VM. (boinc_56155856eb6f9dca, slot#0)
2025-04-15 18:00:32 (75870): Removing network bandwidth throttle group from VM.
2025-04-15 18:00:32 (75870): Removing VM from VirtualBox.
18:00:38 (75870): called boinc_finish(0)

</stderr_txt>
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