Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 16:11:21 (9716): Detected: vboxwrapper 26206
2025-04-14 16:11:21 (9716): Detected: BOINC client v7.16.20
2025-04-14 16:11:21 (9716): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-14 16:11:21 (9716): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 16:11:22 (9716): Create VM. (boinc_c3fbf3c899621310, slot#7)
2025-04-14 16:11:22 (9716): Setting Memory Size for VM. (4700MB)
2025-04-14 16:11:23 (9716): Setting CPU Count for VM. (7)
2025-04-14 16:11:23 (9716): Setting Chipset Options for VM.
2025-04-14 16:11:23 (9716): Setting Graphics Controller Options for VM.
2025-04-14 16:11:23 (9716): Setting Boot Options for VM.
2025-04-14 16:11:24 (9716): Setting Network Configuration for NAT.
2025-04-14 16:11:24 (9716): Enabling VM Network Access.
2025-04-14 16:11:24 (9716): Disabling USB Support for VM.
2025-04-14 16:11:24 (9716): Disabling COM Port Support for VM.
2025-04-14 16:11:25 (9716): Disabling LPT Port Support for VM.
2025-04-14 16:11:25 (9716): Disabling Audio Support for VM.
2025-04-14 16:11:25 (9716): Disabling Clipboard Support for VM.
2025-04-14 16:11:25 (9716): Disabling Drag and Drop Support for VM.
2025-04-14 16:11:26 (9716): Adding storage controller(s) to VM.
2025-04-14 16:11:26 (9716): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 16:11:26 (9716): Adding VirtualBox Guest Additions to VM.
2025-04-14 16:11:27 (9716): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 16:11:27 (9716): forwarding host port 53551 to guest port 80
2025-04-14 16:11:27 (9716): Enabling remote desktop for VM.
2025-04-14 16:11:27 (9716): Required extension pack not installed, remote desktop not enabled.
2025-04-14 16:11:27 (9716): Enabling shared directory for VM.
2025-04-14 16:11:28 (9716): Starting VM using VBoxManage interface. (boinc_c3fbf3c899621310, slot#7)
2025-04-14 16:11:32 (9716): Successfully started VM. (PID = '8056')
2025-04-14 16:11:32 (9716): Reporting VM Process ID to BOINC.
2025-04-14 16:11:32 (9716): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-14 16:11:32 (9716): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 16:11:32 (9716): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 16:11:32 (9716): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 16:11:32 (9716): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 16:11:32 (9716): Detected: Web Application Enabled (http://localhost:53551)
2025-04-14 16:11:32 (9716): Preference change detected
2025-04-14 16:11:32 (9716): Setting CPU throttle for VM. (100%)
2025-04-14 16:11:32 (9716): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 16:11:34 (9716): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 16:11:34 (9716): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 16:11:37 (9716): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 16:11:37 (9716): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 16:11:37 (9716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 16:11:44 (9716): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 16:11:44 (9716): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 16:11:50 (9716): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.000158 main     Log opened 2025-04-14T16:11:48.097272000Z
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.000251 main     OS Product: Linux
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.000280 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.000303 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.000333 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.000333 main     Process ID: 1350
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.000334 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 16:11:50 (9716): Guest Log: 00:00:00.001127 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 16:11:50 (9716): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 16:11:50 (9716): Guest Log: [INFO] Mounting shared directory
2025-04-14 16:11:50 (9716): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 16:11:53 (9716): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 16:11:53 (9716): Guest Log: [INFO] Detected branch: prod
2025-04-14 16:11:53 (9716): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 16:11:53 (9716): Guest Log: Copying input files
2025-04-14 16:11:54 (9716): Guest Log: Copied input files into RunAtlas.
2025-04-14 16:11:54 (9716): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 16:11:54 (9716): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 16:11:54 (9716): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 16:11:54 (9716): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 16:12:00 (9716): Guest Log: 00:00:10.003710 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 040 822 000ns (GuestNow=1 744 639 920 058 973 000 ns GuestLast=1 744 647 108 099 795 000 ns fSetTimeLastLoop=true )
2025-04-14 16:12:01 (9716): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 16:12:01 (9716): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 16:12:01 (9716): Guest Log: 2.6.3.0 1627 0 30120 144851 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 16:12:03 (9716): Guest Log: copied the webapp to /var/www
2025-04-14 16:12:03 (9716): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-14 16:12:03 (9716): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-14 16:12:03 (9716): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 16:12:03 (9716): Guest Log:  *** Starting ATLAS job. (PandaID=6602095141 taskID=44075483) ***
2025-04-14 17:28:22 (9716): Guest Log:  *** Job finished ***
2025-04-14 17:28:22 (9716): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:08,453 | INFO     | [data] queue_monitor thread has finished
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:12,281 | INFO     | job.realtimelogging is not enabled
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:13,284 | INFO     | [payload] run_realtimelog thread has finished
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:14,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867080365888)>', '<ExcThread(monitor, started 139866121684736)>']
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:15,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:15,090 | INFO     | [monitor] control thread has ended
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,118 | INFO     | all workflow threads have been joined
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,118 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,118 | INFO     | traces error code: 0
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,193 [wrapper] ==== pilot stdout END ====
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,197 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,201 [wrapper] pilotpid: 5979
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,205 [wrapper] Pilot exit status: 0
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,271 [wrapper] pandaids: 6602095141
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,298 [wrapper] cleanup supervisor_pilot 23969 5980
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,307 [wrapper] Test setup, not cleaning
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,311 [wrapper] apfmon messages muted
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,315 [wrapper] ==== wrapper stdout END ====
2025-04-14 17:28:22 (9716): Guest Log: 2025-04-14 15:28:19,319 [wrapper] ==== wrapper stderr END ====
2025-04-14 17:28:22 (9716): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 17:28:22 (9716): Guest Log:     "exeErrorCode": 0,
2025-04-14 17:28:22 (9716): Guest Log:     "exeErrorDiag": "",
2025-04-14 17:28:22 (9716): Guest Log:     "pilotErrorCode": 0,
2025-04-14 17:28:22 (9716): Guest Log:     "pilotErrorDiag": "",
2025-04-14 17:28:22 (9716): Guest Log:  *** Listing of results directory ***
2025-04-14 17:28:22 (9716): Guest Log: total 194736
2025-04-14 17:28:22 (9716): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 13 15:24 pilot3.tar.gz
2025-04-14 17:28:22 (9716): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 13 15:25 runpilot2-wrapper.sh
2025-04-14 17:28:22 (9716): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 13 15:25 queuedata.json
2025-04-14 17:28:22 (9716): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 14 14:11 start_atlas.sh
2025-04-14 17:28:22 (9716): Guest Log: -rwxr-xr-x. 1 atlas atlas    508888 Apr 14 14:11 input.tar.gz
2025-04-14 17:28:22 (9716): Guest Log: -rwxr-xr-x. 1 atlas atlas      8817 Apr 14 14:11 init_data.xml
2025-04-14 17:28:22 (9716): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 14:11 EVNT.44075481._000237.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 17:28:22 (9716): Guest Log: -rw-r--r--. 1 atlas atlas      2574 Apr 14 14:12 pandaJob.out
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas       424 Apr 14 14:12 setup.sh.local
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas    986127 Apr 14 14:12 agis_schedconf.cvmfs.json
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 14 14:12 agis_ddmendpoints.agis.ALL.json
2025-04-14 17:28:22 (9716): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 14:12 pilot3
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas        95 Apr 14 15:27 pilot_heartbeat.json
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas 194259088 Apr 14 15:27 HITS.44075483._006115.pool.root.1
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas      1025 Apr 14 15:27 memory_monitor_summary.json
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas    270640 Apr 14 15:27 log.44075483._006115.job.log.tgz.1
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas      7707 Apr 14 15:28 heartbeat.json
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 14 15:28 pilotlog.txt
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas    415451 Apr 14 15:28 log.44075483._006115.job.log.1
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas       357 Apr 14 15:28 output.list
2025-04-14 17:28:22 (9716): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 14 15:28 runtime_log
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas    706560 Apr 14 15:28 result.tar.gz
2025-04-14 17:28:22 (9716): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Apr 14 15:28 runtime_log.err
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas       650 Apr 14 15:28 5ruLDmeOEO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmQYzKDmjUOgKn.diag
2025-04-14 17:28:22 (9716): Guest Log: Looking for outputfile HITS.44075483._006115.pool.root.1
2025-04-14 17:28:22 (9716): Guest Log: HITS file was successfully produced
2025-04-14 17:28:22 (9716): Guest Log: -rw-------. 1 atlas atlas 194259088 Apr 14 15:27 /home/atlas/RunAtlas/HITS.44075483._006115.pool.root.1
2025-04-14 17:28:23 (9716): Guest Log: Successfully finished the ATLAS job!
2025-04-14 17:28:23 (9716): Guest Log: Copying the results back to the shared directory!
2025-04-14 17:28:23 (9716): Guest Log:  *** Contents of shared directory: ***
2025-04-14 17:28:23 (9716): Guest Log: total 410584
2025-04-14 17:28:23 (9716): Guest Log: -rwxrwxrwx. 1 root root 224920270 Apr 14 14:11 ATLAS.root_0
2025-04-14 17:28:23 (9716): Guest Log: -rwxrwxrwx. 1 root root 194259088 Apr 14  2025 HITS.pool.root.1
2025-04-14 17:28:23 (9716): Guest Log: -rwxrwxrwx. 1 root root      8817 Apr 14 14:11 init_data.xml
2025-04-14 17:28:23 (9716): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 14 06:22 input.tar.gz
2025-04-14 17:28:23 (9716): Guest Log: -rwxrwxrwx. 1 root root    706560 Apr 14  2025 result.tar.gz
2025-04-14 17:28:23 (9716): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 06:22 start_atlas.sh
2025-04-14 17:28:23 (9716): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 17:28:23 (9716): VM Completion File Detected.
2025-04-14 17:28:23 (9716): Powering off VM.
2025-04-14 17:28:23 (9716): Successfully stopped VM.
2025-04-14 17:28:23 (9716): Deregistering VM. (boinc_c3fbf3c899621310, slot#7)
2025-04-14 17:28:23 (9716): Removing network bandwidth throttle group from VM.
2025-04-14 17:28:23 (9716): Removing VM from VirtualBox.
17:28:29 (9716): called boinc_finish(0)

</stderr_txt>
]]>

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