Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:32:11 (24268): wrapper (7.7.26015): starting
04:32:11 (24268): wrapper: running run_atlas (--nthreads 12)
[2025-04-14 04:32:11] Arguments: --nthreads 12
[2025-04-14 04:32:11] Threads: 12
[2025-04-14 04:32:11] Checking for CVMFS
[2025-04-14 04:32:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-14 04:32:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-14 04:32:11] Running cvmfs_config stat atlas.cern.ch
[2025-04-14 04:32:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-14 04:32:11] 2.10.0.0 19294 455 61500 144844 1 56 13884635 16777217 929 130560 0 828260 99.996 139444 7548 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-04-14 04:32:11] CVMFS is ok
[2025-04-14 04:32:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-14 04:32:11] Checking for apptainer binary...
[2025-04-14 04:32:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-14 04:32:11] Running /usr/bin/apptainer --version
[2025-04-14 04:32:11] apptainer version 1.3.6-150600.4.9.1
[2025-04-14 04:32:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-14 04:32:11] boinc-runner
[2025-04-14 04:32:11] apptainer works
[2025-04-14 04:32:11] Set ATHENA_PROC_NUMBER=12
[2025-04-14 04:32:11] Set ATHENA_CORE_NUMBER=12
[2025-04-14 04:32:11] Starting ATLAS job with PandaID=6602094154
[2025-04-14 04:32:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-14 05:08:06]  *** The last 200 lines of the pilot log: ***
[2025-04-14 05:08:06]  mtime=0
[2025-04-14 05:08:06]  protocol_id=None
[2025-04-14 05:08:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-14 05:08:06]  replicas=None
[2025-04-14 05:08:06]  scope=mc23_13p6TeV
[2025-04-14 05:08:06]  status=None
[2025-04-14 05:08:06]  status_code=0
[2025-04-14 05:08:06]  storage_token=
[2025-04-14 05:08:06]  surl=/var/lib/boinc/slots/7/PanDA_Pilot-6602094154/log.44075483._005315.job.log.tgz.1
[2025-04-14 05:08:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/a6/log.44075483._005315.job.log.tgz.1
[2025-04-14 05:08:06]  workdir=None
[2025-04-14 05:08:06] ]
[2025-04-14 05:08:06] 2025-04-14 10:07:40,905 | INFO     | transferring file log.44075483._005315.job.log.tgz.1 from /var/lib/boinc/slots/7/PanDA_Pilot-6602094154/log.44075483._005315.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-04-14 05:08:06] 2025-04-14 10:07:40,906 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/7/PanDA_Pilot-6602094154/log.44075483._005315.job.log.tgz.1 /var/lib/boinc/slots/7/log.44075483._005315.job
[2025-04-14 05:08:06] 2025-04-14 10:07:40,919 | INFO     | adding to output.list: log.44075483._005315.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/a6/log.44075483._005315.job.log.tg
[2025-04-14 05:08:06] 2025-04-14 10:07:40,919 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-14 05:08:06] 2025-04-14 10:07:40,919 | INFO     | summary of transferred files:
[2025-04-14 05:08:06] 2025-04-14 10:07:40,919 | INFO     |  -- lfn=log.44075483._005315.job.log.tgz.1, status_code=0, status=transferred
[2025-04-14 05:08:06] 2025-04-14 10:07:40,919 | INFO     | stage-out finished correctly
[2025-04-14 05:08:06] 2025-04-14 10:07:41,164 | WARNING  | process 2723 can no longer be monitored (due to stat problems) - aborting
[2025-04-14 05:08:06] 2025-04-14 10:07:41,164 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6602094154/memory_monitor_summary.json (trf name=prmon)
[2025-04-14 05:08:06] 2025-04-14 10:07:41,205 | INFO     | number of running child processes to parent process 2723: 1
[2025-04-14 05:08:06] 2025-04-14 10:07:41,205 | INFO     | maximum number of monitored processes: 6
[2025-04-14 05:08:06] 2025-04-14 10:07:42,700 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-14 05:08:06] 2025-04-14 10:07:43,708 | INFO     | monitor loop #164: job 0:6602094154 is in state 'finished'
[2025-04-14 05:08:06] 2025-04-14 10:07:43,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-14 05:08:06] 2025-04-14 10:07:44,247 | INFO     | PID=28138 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-14 05:08:06] 2025-04-14 10:07:44,247 | INFO     | .. there are 2 such processes running
[2025-04-14 05:08:06] 2025-04-14 10:07:44,681 | INFO     | job 6602094154 has state=finished
[2025-04-14 05:08:06] 2025-04-14 10:07:44,682 | INFO     | preparing for final server update for job 6602094154 in state='finished'
[2025-04-14 05:08:06] 2025-04-14 10:07:44,682 | INFO     | this job has now completed (state=finished)
[2025-04-14 05:08:06] 2025-04-14 10:07:44,682 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-14 05:08:06] 2025-04-14 10:07:44,682 | INFO     | log transfer has been attempted: DONE
[2025-04-14 05:08:06] 2025-04-14 10:07:44,682 | INFO     | job 6602094154 has finished - writing final server update
[2025-04-14 05:08:06] 2025-04-14 10:07:44,682 | INFO     | total number of processed events: 400 (read)
[2025-04-14 05:08:06] 2025-04-14 10:07:44,683 | INFO     | executing command: lscpu
[2025-04-14 05:08:06] 2025-04-14 10:07:44,702 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-14 05:08:06] 2025-04-14 10:07:46,209 | INFO     | monitor loop #165: job 0:6602094154 is in state 'finished'
[2025-04-14 05:08:06] 2025-04-14 10:07:46,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-14 05:08:06] 2025-04-14 10:07:47,027 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-14 05:08:06] 2025-04-14 10:07:47,027 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6602094154/memory_monitor_summary.json (trf name=prmon)
[2025-04-14 05:08:06] 2025-04-14 10:07:47,028 | INFO     | extracted standard info from prmon json
[2025-04-14 05:08:06] 2025-04-14 10:07:47,028 | INFO     | extracted standard memory fields from prmon json
[2025-04-14 05:08:06] 2025-04-14 10:07:47,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-14 05:08:06] 2025-04-14 10:07:47,028 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-14 05:08:06] 2025-04-14 10:07:47,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-14 05:08:06] 2025-04-14 10:07:47,028 | INFO     | fitting pss+swap vs Time
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | sum of square deviations: 6798267.0
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | sum of deviations: 2706789630.5
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | mean x: 1744624285.5
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | mean y: 2817527.035714286
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | -- intersect: -694634643036.0565
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | intersect: -694634643036.0565
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | chi2: 0.5189048728056872
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | -- intersect: -694634643036.0565
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | current memory leak: 398.16 B/s (using 28 data points, chi2=0.52)
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | ..............................
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . Timing measurements:
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . get job = 0 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . initial setup = 3 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . payload setup = 2 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . stage-in = 0 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . payload execution = 2101 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . stage-out = 0 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,029 | INFO     | . log creation = 0 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,030 | INFO     | ..............................
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | 
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | job summary report
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | --------------------------------------------------
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | PanDA job id: 6602094154
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | task id: 44075483
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | errors: (none)
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | pilot state: finished 
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | transexitcode: 0
[2025-04-14 05:08:06] 2025-04-14 10:07:47,196 | INFO     | exeerrorcode: 0
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | exeerrordiag: 
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | exitcode: 0
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | exitmsg: OK
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | cpuconsumptiontime: 18732 s
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | nevents: 400
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | neventsw: 0
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | pid: 2723
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | pgrp: 2723
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | corecount: 12
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | event service: False
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | sizes: {0: 2417358, 2: 2417564, 11: 2417592, 2107: 2442619, 2109: 2451560, 2111: 2451616, 2115: 2451914}
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | --------------------------------------------------
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | 
[2025-04-14 05:08:06] 2025-04-14 10:07:47,197 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | job 6602094154 has completed (purged errors)
[2025-04-14 05:08:06] 2025-04-14 10:07:47,213 | INFO     | overall cleanup function is called
[2025-04-14 05:08:06] 2025-04-14 10:07:48,217 | INFO     | --- collectZombieJob: --- 10, [2723]
[2025-04-14 05:08:06] 2025-04-14 10:07:48,217 | INFO     | zombie collector waiting for pid 2723
[2025-04-14 05:08:06] 2025-04-14 10:07:48,217 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-14 05:08:06] 2025-04-14 10:07:48,218 | INFO     | collected zombie processes
[2025-04-14 05:08:06] 2025-04-14 10:07:48,218 | INFO     | will attempt to kill all subprocesses of pid=2723
[2025-04-14 05:08:06] 2025-04-14 10:07:48,268 | INFO     | process IDs to be killed: [2723] (in reverse order)
[2025-04-14 05:08:06] 2025-04-14 10:07:48,290 | WARNING  | found no corresponding commands to process id(s)
[2025-04-14 05:08:06] 2025-04-14 10:07:48,290 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-14 05:08:06] 2025-04-14 10:07:48,292 | INFO     | did not find any defunct processes belonging to 2723
[2025-04-14 05:08:06] 2025-04-14 10:07:48,294 | INFO     | did not find any defunct processes belonging to 2723
[2025-04-14 05:08:06] 2025-04-14 10:07:48,294 | INFO     | ready for new job
[2025-04-14 05:08:06] 2025-04-14 10:07:48,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-14 05:08:06] 2025-04-14 10:07:48,295 | INFO     | **************************************
[2025-04-14 05:08:06] 2025-04-14 10:07:48,295 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-14 05:08:06] 2025-04-14 10:07:48,295 | INFO     | **************************************
[2025-04-14 05:08:06] 2025-04-14 10:07:48,295 | INFO     | 
[2025-04-14 05:08:06] 2025-04-14 10:07:48,296 | INFO     | architecture information:
[2025-04-14 05:08:06] 2025-04-14 10:07:48,296 | INFO     | executing command: cat /etc/os-release
[2025-04-14 05:08:06] 2025-04-14 10:07:48,304 | INFO     | cat /etc/os-release:
[2025-04-14 05:08:06] NAME="CentOS Linux"
[2025-04-14 05:08:06] VERSION="7 (Core)"
[2025-04-14 05:08:06] ID="centos"
[2025-04-14 05:08:06] ID_LIKE="rhel fedora"
[2025-04-14 05:08:06] VERSION_ID="7"
[2025-04-14 05:08:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-14 05:08:06] ANSI_COLOR="0;31"
[2025-04-14 05:08:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-14 05:08:06] HOME_URL="https://www.centos.org/"
[2025-04-14 05:08:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-14 05:08:06] 
[2025-04-14 05:08:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-14 05:08:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-14 05:08:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-14 05:08:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-14 05:08:06] 
[2025-04-14 05:08:06] 2025-04-14 10:07:48,304 | INFO     | **************************************
[2025-04-14 05:08:06] 2025-04-14 10:07:48,807 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-04-14 05:08:06] 2025-04-14 10:07:48,821 | INFO     | sufficient remaining disk space (3885665091584 B)
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | INFO     | current server update state: UPDATING_FINAL
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | INFO     | update_server=False
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | INFO     | found 0 job(s) in 20 queues
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-14 05:08:06] 2025-04-14 10:07:48,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-14 05:08:06] 2025-04-14 10:07:48,917 | INFO     | all payload control threads have been joined
[2025-04-14 05:08:06] 2025-04-14 10:07:48,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-14 05:08:06] 2025-04-14 10:07:49,597 | INFO     | all data control threads have been joined
[2025-04-14 05:08:06] 2025-04-14 10:07:49,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-14 05:08:06] 2025-04-14 10:07:49,717 | INFO     | aborting loop
[2025-04-14 05:08:06] 2025-04-14 10:07:49,825 | INFO     | [job] retrieve thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:49,826 | INFO     | [job] queue monitor thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:49,841 | INFO     | [payload] validate_pre thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:49,921 | INFO     | [payload] control thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:50,313 | INFO     | [data] copytool_in thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:50,352 | INFO     | all job control threads have been joined
[2025-04-14 05:08:06] 2025-04-14 10:07:50,453 | INFO     | [payload] failed_post thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:50,601 | INFO     | [data] control thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:50,661 | INFO     | [payload] execute_payloads thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:50,721 | INFO     | [job] job monitor thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:50,969 | INFO     | [data] copytool_out thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:51,281 | INFO     | [job] create_data_payload thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:51,293 | INFO     | [job] validate thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:51,353 | INFO     | [job] control thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:51,409 | INFO     | [payload] validate_post thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:52,828 | INFO     | [data] queue_monitor thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:07:59,577 | INFO     | job.realtimelogging is not enabled
[2025-04-14 05:08:06] 2025-04-14 10:08:00,581 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-14 05:08:06] 2025-04-14 10:08:01,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140634259904320)>', '<ExcThread(monitor, started 140633335396096)>']
[2025-04-14 05:08:06] 2025-04-14 10:08:01,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-14 05:08:06] 2025-04-14 10:08:01,878 | INFO     | [monitor] control thread has ended
[2025-04-14 05:08:06] 2025-04-14 10:08:06,139 | INFO     | all workflow threads have been joined
[2025-04-14 05:08:06] 2025-04-14 10:08:06,139 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-14 05:08:06] 2025-04-14 10:08:06,139 | INFO     | traces error code: 0
[2025-04-14 05:08:06] 2025-04-14 10:08:06,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-14 05:08:06] 2025-04-14 10:08:06,200 [wrapper] ==== pilot stdout END ====
[2025-04-14 05:08:06] 2025-04-14 10:08:06,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-14 05:08:06] 2025-04-14 10:08:06,202 [wrapper] pilotpid: 28138
[2025-04-14 05:08:06] 2025-04-14 10:08:06,204 [wrapper] Pilot exit status: 0
[2025-04-14 05:08:06] 2025-04-14 10:08:06,209 [wrapper] pandaids: 6602094154
[2025-04-14 05:08:06] 2025-04-14 10:08:06,226 [wrapper] cleanup supervisor_pilot 17069 28139
[2025-04-14 05:08:06] 2025-04-14 10:08:06,228 [wrapper] Test setup, not cleaning
[2025-04-14 05:08:06] 2025-04-14 10:08:06,230 [wrapper] apfmon messages muted
[2025-04-14 05:08:06] 2025-04-14 10:08:06,231 [wrapper] ==== wrapper stdout END ====
[2025-04-14 05:08:06] 2025-04-14 10:08:06,234 [wrapper] ==== wrapper stderr END ====
[2025-04-14 05:08:06]  *** Error codes and diagnostics ***
[2025-04-14 05:08:06]     "exeErrorCode": 0,
[2025-04-14 05:08:06]     "exeErrorDiag": "",
[2025-04-14 05:08:06]     "pilotErrorCode": 0,
[2025-04-14 05:08:06]     "pilotErrorDiag": "",
[2025-04-14 05:08:06]  *** Listing of results directory ***
[2025-04-14 05:08:06] total 423316
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc    495897 Apr 13 09:05 pilot3.tar.gz
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc      5111 Apr 13 09:06 queuedata.json
[2025-04-14 05:08:06] -rwx------ 1 boinc boinc     37140 Apr 13 09:06 runpilot2-wrapper.sh
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc       100 Apr 14 04:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-14 05:08:06] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 04:32 run_atlas
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc       105 Apr 14 04:32 job.xml
[2025-04-14 05:08:06] -rw-r--r-- 2 boinc boinc     17569 Apr 14 04:32 start_atlas.sh
[2025-04-14 05:08:06] drwxrwx--x 1 boinc boinc        76 Apr 14 04:32 shared
[2025-04-14 05:08:06] -rw-r--r-- 2 boinc boinc    508886 Apr 14 04:32 input.tar.gz
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc     10044 Apr 14 04:32 init_data.xml
[2025-04-14 05:08:06] -rw-r--r-- 2 boinc boinc 222943148 Apr 14 04:32 EVNT.44075481._000205.pool.root.1
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc         0 Apr 14 04:32 boinc_lockfile
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc      2575 Apr 14 04:32 pandaJob.out
[2025-04-14 05:08:06] -rw------- 1 boinc boinc       473 Apr 14 04:32 setup.sh.local
[2025-04-14 05:08:06] -rw------- 1 boinc boinc    981866 Apr 14 04:32 agis_schedconf.cvmfs.json
[2025-04-14 05:08:06] -rw------- 1 boinc boinc   1603529 Apr 14 04:32 agis_ddmendpoints.agis.ALL.json
[2025-04-14 05:08:06] drwx------ 1 boinc boinc       368 Apr 14 04:32 pilot3
[2025-04-14 05:08:06] -rw------- 1 boinc boinc 205570431 Apr 14 05:07 HITS.44075483._005315.pool.root.1
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc       529 Apr 14 05:07 boinc_task_state.xml
[2025-04-14 05:08:06] -rw------- 1 boinc boinc        95 Apr 14 05:07 pilot_heartbeat.json
[2025-04-14 05:08:06] -rw------- 1 boinc boinc      1028 Apr 14 05:07 memory_monitor_summary.json
[2025-04-14 05:08:06] -rw------- 1 boinc boinc    324844 Apr 14 05:07 log.44075483._005315.job.log.tgz.1
[2025-04-14 05:08:06] -rw------- 1 boinc boinc      7684 Apr 14 05:07 heartbeat.json
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc      8192 Apr 14 05:08 boinc_mmap_file
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc        27 Apr 14 05:08 wrapper_checkpoint.txt
[2025-04-14 05:08:06] -rw------- 1 boinc boinc      4550 Apr 14 05:08 pilotlog.txt
[2025-04-14 05:08:06] -rw------- 1 boinc boinc    243171 Apr 14 05:08 log.44075483._005315.job.log.1
[2025-04-14 05:08:06] -rw------- 1 boinc boinc       357 Apr 14 05:08 output.list
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc       620 Apr 14 05:08 runtime_log
[2025-04-14 05:08:06] -rw------- 1 boinc boinc    583680 Apr 14 05:08 result.tar.gz
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc     11478 Apr 14 05:08 runtime_log.err
[2025-04-14 05:08:06] -rw------- 1 boinc boinc       652 Apr 14 05:08 Gp0KDmP9CO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmjUzKDms2B7qm.diag
[2025-04-14 05:08:06] -rw-r--r-- 1 boinc boinc     21379 Apr 14 05:08 stderr.txt
[2025-04-14 05:08:06] HITS file was successfully produced:
[2025-04-14 05:08:06] -rw------- 1 boinc boinc 205570431 Apr 14 05:07 shared/HITS.pool.root.1
[2025-04-14 05:08:06]  *** Contents of shared directory: ***
[2025-04-14 05:08:06] total 419568
[2025-04-14 05:08:06] -rw-r--r-- 2 boinc boinc     17569 Apr 14 04:32 start_atlas.sh
[2025-04-14 05:08:06] -rw-r--r-- 2 boinc boinc    508886 Apr 14 04:32 input.tar.gz
[2025-04-14 05:08:06] -rw-r--r-- 2 boinc boinc 222943148 Apr 14 04:32 ATLAS.root_0
[2025-04-14 05:08:06] -rw------- 1 boinc boinc 205570431 Apr 14 05:07 HITS.pool.root.1
[2025-04-14 05:08:06] -rw------- 1 boinc boinc    583680 Apr 14 05:08 result.tar.gz
05:08:07 (24268): run_atlas exited; CPU time 18743.360368
05:08:07 (24268): called boinc_finish(0)

</stderr_txt>
]]>

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