Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 16:43:21 (630399): Detected: vboxwrapper 26206
2025-04-14 16:43:21 (630399): Detected: BOINC client v7.20.2
2025-04-14 16:43:21 (630399): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-14 16:43:21 (630399): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 16:43:22 (630399): Create VM. (boinc_965e236d95b4e09c, slot#2)
2025-04-14 16:43:22 (630399): Setting Memory Size for VM. (4700MB)
2025-04-14 16:43:22 (630399): Setting CPU Count for VM. (7)
2025-04-14 16:43:22 (630399): Setting Chipset Options for VM.
2025-04-14 16:43:22 (630399): Setting Graphics Controller Options for VM.
2025-04-14 16:43:22 (630399): Setting Boot Options for VM.
2025-04-14 16:43:22 (630399): Setting Network Configuration for NAT.
2025-04-14 16:43:22 (630399): Enabling VM Network Access.
2025-04-14 16:43:22 (630399): Disabling USB Support for VM.
2025-04-14 16:43:22 (630399): Disabling COM Port Support for VM.
2025-04-14 16:43:22 (630399): Disabling LPT Port Support for VM.
2025-04-14 16:43:22 (630399): Disabling Audio Support for VM.
2025-04-14 16:43:22 (630399): Disabling Clipboard Support for VM.
2025-04-14 16:43:23 (630399): Disabling Drag and Drop Support for VM.
2025-04-14 16:43:23 (630399): Adding storage controller(s) to VM.
2025-04-14 16:43:23 (630399): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 16:43:24 (630399): Adding VirtualBox Guest Additions to VM.
2025-04-14 16:43:24 (630399): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 16:43:24 (630399): forwarding host port 54585 to guest port 80
2025-04-14 16:43:24 (630399): Enabling remote desktop for VM.
2025-04-14 16:43:24 (630399): Required extension pack not installed, remote desktop not enabled.
2025-04-14 16:43:24 (630399): Enabling shared directory for VM.
2025-04-14 16:43:25 (630399): Starting VM using VBoxManage interface. (boinc_965e236d95b4e09c, slot#2)
2025-04-14 16:43:26 (630399): Successfully started VM. (PID = '631016')
2025-04-14 16:43:26 (630399): Reporting VM Process ID to BOINC.
2025-04-14 16:43:26 (630399): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-14 16:43:26 (630399): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 16:43:26 (630399): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 16:43:26 (630399): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 16:43:26 (630399): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 16:43:26 (630399): Detected: Web Application Enabled (http://localhost:54585)
2025-04-14 16:43:26 (630399): Preference change detected
2025-04-14 16:43:26 (630399): Setting CPU throttle for VM. (90%)
2025-04-14 16:43:26 (630399): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 16:43:28 (630399): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 16:43:28 (630399): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 16:43:31 (630399): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 16:43:31 (630399): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 16:43:31 (630399): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 16:43:43 (630399): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 16:43:43 (630399): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 16:44:02 (630399): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.000638 main     Log opened 2025-04-14T14:44:00.166769000Z
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.001064 main     OS Product: Linux
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.001173 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.001262 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.001349 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.001357 main     Process ID: 947
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.001359 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 16:44:02 (630399): Guest Log: 00:00:00.004103 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 16:44:08 (630399): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 16:44:08 (630399): Guest Log: [INFO] Mounting shared directory
2025-04-14 16:44:08 (630399): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 16:44:17 (630399): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 16:44:17 (630399): Guest Log: [INFO] Detected branch: prod
2025-04-14 16:44:18 (630399): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 16:44:18 (630399): Guest Log: Copying input files
2025-04-14 16:44:21 (630399): Guest Log: Copied input files into RunAtlas.
2025-04-14 16:44:22 (630399): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 16:44:22 (630399): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 16:44:22 (630399): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 16:44:22 (630399): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 16:44:32 (630399): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 16:44:32 (630399): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 16:44:32 (630399): Guest Log: 2.6.3.0 1683 0 29980 144852 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 16:44:37 (630399): Guest Log: copied the webapp to /var/www
2025-04-14 16:44:37 (630399): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-14 16:44:37 (630399): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-14 16:44:37 (630399): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 16:44:37 (630399): Guest Log:  *** Starting ATLAS job. (PandaID=6602110515 taskID=44075483) ***
2025-04-14 18:22:30 (630399): Status Report: Elapsed Time: '6000.000000'
2025-04-14 18:22:30 (630399): Status Report: CPU Time: '39699.400000'
2025-04-14 20:01:36 (630399): Status Report: Elapsed Time: '12000.000000'
2025-04-14 20:01:36 (630399): Status Report: CPU Time: '84725.870000'
2025-04-14 21:40:41 (630399): Status Report: Elapsed Time: '18000.000000'
2025-04-14 21:40:41 (630399): Status Report: CPU Time: '129740.770000'
2025-04-14 23:19:47 (630399): Status Report: Elapsed Time: '24000.000000'
2025-04-14 23:19:47 (630399): Status Report: CPU Time: '174806.470000'
2025-04-15 00:58:53 (630399): Status Report: Elapsed Time: '30000.000000'
2025-04-15 00:58:53 (630399): Status Report: CPU Time: '219850.500000'
2025-04-15 02:37:58 (630399): Status Report: Elapsed Time: '36000.000000'
2025-04-15 02:37:58 (630399): Status Report: CPU Time: '264885.950000'
2025-04-15 03:22:00 (630399): Guest Log:  *** Job finished ***
2025-04-15 03:22:00 (630399): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:50,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:51,303 | INFO     | [job] queue monitor thread has finished
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:52,462 | INFO     | [data] queue_monitor thread has finished
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:54,092 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325580146496)>', '<ExcThread(monitor, started 140325121136384)>']
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:54,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:54,422 | INFO     | [monitor] control thread has ended
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,112 | INFO     | all workflow threads have been joined
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,113 | INFO     | end of generic workflow (traces error code: 0)
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,113 | INFO     | traces error code: 0
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,349 [wrapper] ==== pilot stdout END ====
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,363 [wrapper] ==== wrapper stdout RESUME ====
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,402 [wrapper] pilotpid: 6027
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,460 [wrapper] Pilot exit status: 0
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,530 [wrapper] pandaids: 6602110515
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,623 [wrapper] cleanup supervisor_pilot 15762 6028
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,637 [wrapper] Test setup, not cleaning
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,651 [wrapper] apfmon messages muted
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,665 [wrapper] ==== wrapper stdout END ====
2025-04-15 03:22:00 (630399): Guest Log: 2025-04-15 01:21:59,679 [wrapper] ==== wrapper stderr END ====
2025-04-15 03:22:00 (630399): Guest Log:  *** Error codes and diagnostics ***
2025-04-15 03:22:00 (630399): Guest Log:     "exeErrorCode": 0,
2025-04-15 03:22:00 (630399): Guest Log:     "exeErrorDiag": "",
2025-04-15 03:22:00 (630399): Guest Log:     "pilotErrorCode": 0,
2025-04-15 03:22:00 (630399): Guest Log:     "pilotErrorDiag": "",
2025-04-15 03:22:00 (630399): Guest Log:  *** Listing of results directory ***
2025-04-15 03:22:00 (630399): Guest Log: total 201756
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 14 01:38 pilot3.tar.gz
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 14 01:40 queuedata.json
2025-04-15 03:22:00 (630399): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 14 01:41 runpilot2-wrapper.sh
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 14 14:44 start_atlas.sh
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas      6439 Apr 14 14:44 init_data.xml
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas    508894 Apr 14 14:44 input.tar.gz
2025-04-15 03:22:00 (630399): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 14:44 EVNT.44075481._000448.pool.root.1 -> /data/./ATLAS.root_0
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 14 14:44 pandaJob.out
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas       424 Apr 14 14:44 setup.sh.local
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas    986111 Apr 14 14:46 agis_schedconf.cvmfs.json
2025-04-15 03:22:00 (630399): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 14:46 pilot3
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas 195996103 Apr 15 01:20 HITS.44075483._011390.pool.root.1
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas      1049 Apr 15 01:21 memory_monitor_summary.json
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 15 01:21 agis_ddmendpoints.agis.ALL.json
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas    562769 Apr 15 01:21 log.44075483._011390.job.log.tgz.1
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas        95 Apr 15 01:21 pilot_heartbeat.json
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas      7681 Apr 15 01:21 heartbeat.json
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 15 01:21 pilotlog.txt
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas   2852744 Apr 15 01:21 log.44075483._011390.job.log.1
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas       357 Apr 15 01:21 output.list
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 15 01:21 runtime_log
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas   3430400 Apr 15 01:21 result.tar.gz
2025-04-15 03:22:00 (630399): Guest Log: -rw-r--r--. 1 atlas atlas     10929 Apr 15 01:22 runtime_log.err
2025-04-15 03:22:00 (630399): Guest Log: -rw-------. 1 atlas atlas       661 Apr 15 01:22 6NKKDml0NO7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmyvzKDmQgGb3m.diag
2025-04-15 03:22:00 (630399): Guest Log: Looking for outputfile HITS.44075483._011390.pool.root.1
2025-04-15 03:22:01 (630399): Guest Log: HITS file was successfully produced
2025-04-15 03:22:01 (630399): Guest Log: -rw-------. 1 atlas atlas 195996103 Apr 15 01:20 /home/atlas/RunAtlas/HITS.44075483._011390.pool.root.1
2025-04-15 03:22:01 (630399): Guest Log: Successfully finished the ATLAS job!
2025-04-15 03:22:01 (630399): Guest Log: Copying the results back to the shared directory!
2025-04-15 03:22:01 (630399): Guest Log:  *** Contents of shared directory: ***
2025-04-15 03:22:02 (630399): Guest Log: total 224096
2025-04-15 03:22:02 (630399): Guest Log: -rw-r--r--. 1 root root 225499749 Apr 14 14:43 ATLAS.root_0
2025-04-15 03:22:02 (630399): Guest Log: -rw-r--r--. 1 root root      6439 Apr 14 14:43 init_data.xml
2025-04-15 03:22:02 (630399): Guest Log: -rw-r--r--. 1 root root    508894 Apr 14 14:43 input.tar.gz
2025-04-15 03:22:02 (630399): Guest Log: -rw-r--r--. 1 root root   3430400 Apr 15 01:22 result.tar.gz
2025-04-15 03:22:02 (630399): Guest Log: -rw-r--r--. 1 root root     17569 Apr 14 14:43 start_atlas.sh
2025-04-15 03:22:02 (630399): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-15 03:22:02 (630399): VM Completion File Detected.
2025-04-15 03:22:02 (630399): Powering off VM.
2025-04-15 03:22:03 (630399): Successfully stopped VM.
2025-04-15 03:22:03 (630399): Deregistering VM. (boinc_965e236d95b4e09c, slot#2)
2025-04-15 03:22:03 (630399): Removing network bandwidth throttle group from VM.
2025-04-15 03:22:03 (630399): Removing VM from VirtualBox.
03:22:08 (630399): called boinc_finish(0)

</stderr_txt>
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