Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 23:59:18 (5964): Detected: vboxwrapper 26206
2025-04-13 23:59:18 (5964): Detected: BOINC client v8.0.2
2025-04-13 23:59:19 (5964): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-13 23:59:19 (5964): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 23:59:20 (5964): Create VM. (boinc_24a0eda988b35f7a, slot#11)
2025-04-13 23:59:20 (5964): Setting Memory Size for VM. (4400MB)
2025-04-13 23:59:20 (5964): Setting CPU Count for VM. (4)
2025-04-13 23:59:21 (5964): Setting Chipset Options for VM.
2025-04-13 23:59:21 (5964): Setting Graphics Controller Options for VM.
2025-04-13 23:59:21 (5964): Setting Boot Options for VM.
2025-04-13 23:59:21 (5964): Setting Network Configuration for NAT.
2025-04-13 23:59:22 (5964): Enabling VM Network Access.
2025-04-13 23:59:22 (5964): Disabling USB Support for VM.
2025-04-13 23:59:22 (5964): Disabling COM Port Support for VM.
2025-04-13 23:59:22 (5964): Disabling LPT Port Support for VM.
2025-04-13 23:59:23 (5964): Disabling Audio Support for VM.
2025-04-13 23:59:23 (5964): Disabling Clipboard Support for VM.
2025-04-13 23:59:23 (5964): Disabling Drag and Drop Support for VM.
2025-04-13 23:59:23 (5964): Adding storage controller(s) to VM.
2025-04-13 23:59:24 (5964): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 23:59:24 (5964): Adding VirtualBox Guest Additions to VM.
2025-04-13 23:59:24 (5964): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 23:59:25 (5964): forwarding host port 63225 to guest port 80
2025-04-13 23:59:25 (5964): Enabling remote desktop for VM.
2025-04-13 23:59:25 (5964): Required extension pack not installed, remote desktop not enabled.
2025-04-13 23:59:25 (5964): Enabling shared directory for VM.
2025-04-13 23:59:26 (5964): Starting VM using VBoxManage interface. (boinc_24a0eda988b35f7a, slot#11)
2025-04-13 23:59:30 (5964): Successfully started VM. (PID = '19616')
2025-04-13 23:59:30 (5964): Reporting VM Process ID to BOINC.
2025-04-13 23:59:30 (5964): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-13 23:59:30 (5964): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 23:59:30 (5964): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 23:59:30 (5964): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 23:59:30 (5964): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 23:59:30 (5964): Detected: Web Application Enabled (http://localhost:63225)
2025-04-13 23:59:30 (5964): Preference change detected
2025-04-13 23:59:30 (5964): Setting CPU throttle for VM. (100%)
2025-04-13 23:59:31 (5964): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 23:59:32 (5964): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 23:59:32 (5964): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 23:59:35 (5964): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 23:59:35 (5964): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 23:59:35 (5964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 23:59:44 (5964): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 23:59:44 (5964): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 23:59:54 (5964): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000111 main     Log opened 2025-04-13T23:59:52.095027000Z
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000192 main     OS Product: Linux
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000216 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000237 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000257 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000257 main     Process ID: 1311
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000258 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 23:59:54 (5964): Guest Log: 00:00:00.000813 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 23:59:54 (5964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 23:59:54 (5964): Guest Log: [INFO] Mounting shared directory
2025-04-13 23:59:54 (5964): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 00:00:01 (5964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 00:00:01 (5964): Guest Log: [INFO] Detected branch: prod
2025-04-14 00:00:01 (5964): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 00:00:01 (5964): Guest Log: Copying input files
2025-04-14 00:00:02 (5964): Guest Log: Copied input files into RunAtlas.
2025-04-14 00:00:02 (5964): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 00:00:02 (5964): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 00:00:02 (5964): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 00:00:02 (5964): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 00:00:04 (5964): Guest Log: 00:00:10.004498 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 320 379 000ns (GuestNow=1 744 603 204 417 365 000 ns GuestLast=1 744 588 792 096 986 000 ns fSetTimeLastLoop=true )
2025-04-14 00:00:12 (5964): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 00:00:13 (5964): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 00:00:13 (5964): Guest Log: 2.6.3.0 1592 0 32224 144835 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 00:00:18 (5964): Guest Log: copied the webapp to /var/www
2025-04-14 00:00:18 (5964): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-14 00:00:18 (5964): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-14 00:00:18 (5964): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 00:00:18 (5964): Guest Log:  *** Starting ATLAS job. (PandaID=6602106581 taskID=44075483) ***
2025-04-14 01:39:33 (5964): Status Report: Elapsed Time: '6000.000000'
2025-04-14 01:39:33 (5964): Status Report: CPU Time: '16765.593750'
2025-04-14 03:19:36 (5964): Status Report: Elapsed Time: '12000.000000'
2025-04-14 03:19:36 (5964): Status Report: CPU Time: '30459.703125'
2025-04-14 04:59:38 (5964): Status Report: Elapsed Time: '18000.000000'
2025-04-14 04:59:38 (5964): Status Report: CPU Time: '30706.671875'
2025-04-14 06:11:05 (5964): VM state change detected. (old = 'running', new = 'paused')
2025-04-14 06:45:21 (5964): VM state change detected. (old = 'paused', new = 'running')
2025-04-14 06:45:30 (5964): Guest Log: 06:11:10.702803 timesync vgsvcTimeSyncWorker: Radical host time change: 2 063 677 000 000ns (HostNow=1 744 627 507 788 000 000 ns HostLast=1 744 625 444 111 000 000 ns)
2025-04-14 06:45:40 (5964): Guest Log: 06:11:20.703314 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 052 672 913 000ns (GuestNow=1 744 627 517 788 560 000 ns GuestLast=1 744 625 465 115 647 000 ns fSetTimeLastLoop=true )
2025-04-14 07:05:32 (5964): Guest Log:  *** Job finished ***
2025-04-14 07:05:32 (5964): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:14,087 | INFO     | [payload] run_realtimelog thread has finished
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:15,589 | INFO     | [data] queue_monitor thread has finished
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:17,092 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140546767636288)>', '<ExcThread(monitor, started 140545741543168)>']
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:17,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:17,558 | INFO     | [monitor] control thread has ended
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,114 | INFO     | all workflow threads have been joined
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,114 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,114 | INFO     | traces error code: 0
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,259 [wrapper] ==== pilot stdout END ====
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,262 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,265 [wrapper] pilotpid: 5943
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:00:22,268 [wrapper] Pilot exit status: 0
2025-04-14 07:05:32 (5964): Guest Log: ./runpilot2-wrapper.sh: line 1045: /usr/bin/xargs: Input/output error
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:05:06,686 [wrapper] pandaids: 
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:05:06,706 [wrapper] cleanup supervisor_pilot 12248 5944
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:05:06,708 [wrapper] Test setup, not cleaning
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:05:06,711 [wrapper] apfmon messages muted
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:05:06,714 [wrapper] ==== wrapper stdout END ====
2025-04-14 07:05:32 (5964): Guest Log: 2025-04-14 11:05:06,716 [wrapper] ==== wrapper stderr END ====
2025-04-14 07:05:32 (5964): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 07:05:32 (5964): Guest Log:     "exeErrorCode": 68,
2025-04-14 07:05:32 (5964): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2025-04-14 07:05:32 (5964): Guest Log:     "pilotErrorCode": 1305,
2025-04-14 07:05:32 (5964): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2025-04-14 07:05:32 (5964): Guest Log:  *** Listing of results directory ***
2025-04-14 07:05:32 (5964): Guest Log: total 5824
2025-04-14 07:05:32 (5964): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 14 00:04 pilot3.tar.gz
2025-04-14 07:05:32 (5964): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 14 00:15 queuedata.json
2025-04-14 07:05:32 (5964): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 14 00:20 runpilot2-wrapper.sh
2025-04-14 07:05:32 (5964): Guest Log: -rwxr-xr-x. 1 atlas atlas    8950 Apr 14 04:00 init_data.xml
2025-04-14 07:05:32 (5964): Guest Log: -rwxr-xr-x. 1 atlas atlas  508894 Apr 14 04:00 input.tar.gz
2025-04-14 07:05:32 (5964): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 14 04:00 start_atlas.sh
2025-04-14 07:05:32 (5964): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 14 04:00 EVNT.44075481._000421.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 07:05:32 (5964): Guest Log: -rw-r--r--. 1 atlas atlas    2577 Apr 14 04:00 pandaJob.out
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas     424 Apr 14 04:00 setup.sh.local
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas  985904 Apr 14 04:01 agis_schedconf.cvmfs.json
2025-04-14 07:05:32 (5964): Guest Log: drwx------. 4 atlas atlas    4096 Apr 14 04:01 pilot3
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas    1026 Apr 14 07:08 memory_monitor_summary.json
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas  258236 Apr 14 07:12 log.44075483._010727.job.log.tgz.1
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas       0 Apr 14 07:13 agis_ddmendpoints.agis.ALL.json
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas      97 Apr 14 10:59 pilot_heartbeat.json
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas   10612 Apr 14 11:00 heartbeat.json
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas    4413 Apr 14 11:00 pilotlog.txt
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas 1636888 Apr 14 11:05 log.44075483._010727.job.log.1
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas     188 Apr 14 11:05 output.list
2025-04-14 07:05:32 (5964): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 14 11:05 runtime_log
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas 1914880 Apr 14 11:05 result.tar.gz
2025-04-14 07:05:32 (5964): Guest Log: -rw-r--r--. 1 atlas atlas   10774 Apr 14 11:05 runtime_log.err
2025-04-14 07:05:32 (5964): Guest Log: -rw-------. 1 atlas atlas     654 Apr 14 11:05 5w5NDmrjMO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmD5ULDmddpQ2m.diag
2025-04-14 07:05:32 (5964): Guest Log: Looking for outputfile HITS.44075483._010727.pool.root.1
2025-04-14 07:05:32 (5964): Guest Log: No HITS file was produced
2025-04-14 07:05:32 (5964): Guest Log: Successfully finished the ATLAS job!
2025-04-14 07:05:32 (5964): Guest Log: Copying the results back to the shared directory!
2025-04-14 07:05:32 (5964): Guest Log:  *** Contents of shared directory: ***
2025-04-14 07:05:32 (5964): Guest Log: total 221440
2025-04-14 07:05:32 (5964): Guest Log: -rwxrwxrwx. 1 root root 224291535 Apr 14 03:59 ATLAS.root_0
2025-04-14 07:05:32 (5964): Guest Log: -rwxrwxrwx. 1 root root      8950 Apr 14 03:59 init_data.xml
2025-04-14 07:05:32 (5964): Guest Log: -rwxrwxrwx. 1 root root    508894 Apr 14 03:56 input.tar.gz
2025-04-14 07:05:32 (5964): Guest Log: -rwxrwxrwx. 1 root root   1914880 Apr 14  2025 result.tar.gz
2025-04-14 07:05:32 (5964): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 03:56 start_atlas.sh
2025-04-14 07:05:32 (5964): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 07:05:32 (5964): VM Completion File Detected.
2025-04-14 07:05:32 (5964): Powering off VM.
2025-04-14 07:05:32 (5964): Successfully stopped VM.
2025-04-14 07:05:32 (5964): Deregistering VM. (boinc_24a0eda988b35f7a, slot#11)
2025-04-14 07:05:32 (5964): Removing network bandwidth throttle group from VM.
2025-04-14 07:05:32 (5964): Removing VM from VirtualBox.
07:05:38 (5964): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN