Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-14 10:44:09 (6248): Detected: vboxwrapper 26206
2025-04-14 10:44:09 (6248): Detected: BOINC client v7.16.20
2025-04-14 10:44:09 (6248): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-14 10:44:09 (6248): Successfully copied 'init_data.xml' to the shared directory.
2025-04-14 10:44:10 (6248): Create VM. (boinc_b0e3203dbefea385, slot#5)
2025-04-14 10:44:10 (6248): Setting Memory Size for VM. (4700MB)
2025-04-14 10:44:11 (6248): Setting CPU Count for VM. (7)
2025-04-14 10:44:11 (6248): Setting Chipset Options for VM.
2025-04-14 10:44:11 (6248): Setting Graphics Controller Options for VM.
2025-04-14 10:44:11 (6248): Setting Boot Options for VM.
2025-04-14 10:44:12 (6248): Setting Network Configuration for NAT.
2025-04-14 10:44:12 (6248): Enabling VM Network Access.
2025-04-14 10:44:12 (6248): Disabling USB Support for VM.
2025-04-14 10:44:12 (6248): Disabling COM Port Support for VM.
2025-04-14 10:44:13 (6248): Disabling LPT Port Support for VM.
2025-04-14 10:44:13 (6248): Disabling Audio Support for VM.
2025-04-14 10:44:13 (6248): Disabling Clipboard Support for VM.
2025-04-14 10:44:13 (6248): Disabling Drag and Drop Support for VM.
2025-04-14 10:44:14 (6248): Adding storage controller(s) to VM.
2025-04-14 10:44:14 (6248): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-14 10:44:14 (6248): Adding VirtualBox Guest Additions to VM.
2025-04-14 10:44:15 (6248): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-14 10:44:15 (6248): forwarding host port 50667 to guest port 80
2025-04-14 10:44:15 (6248): Enabling remote desktop for VM.
2025-04-14 10:44:16 (6248): Required extension pack not installed, remote desktop not enabled.
2025-04-14 10:44:16 (6248): Enabling shared directory for VM.
2025-04-14 10:44:16 (6248): Starting VM using VBoxManage interface. (boinc_b0e3203dbefea385, slot#5)
2025-04-14 10:44:21 (6248): Successfully started VM. (PID = '9712')
2025-04-14 10:44:21 (6248): Reporting VM Process ID to BOINC.
2025-04-14 10:44:21 (6248): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-14 10:44:21 (6248): Guest Log: CPUID EDX: 0x178bfbff
2025-04-14 10:44:21 (6248): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-14 10:44:21 (6248): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-14 10:44:21 (6248): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-14 10:44:21 (6248): Detected: Web Application Enabled (http://localhost:50667)
2025-04-14 10:44:21 (6248): Preference change detected
2025-04-14 10:44:21 (6248): Setting CPU throttle for VM. (100%)
2025-04-14 10:44:22 (6248): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-14 10:44:23 (6248): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-14 10:44:23 (6248): Guest Log: BIOS: Booting from Hard Disk...
2025-04-14 10:44:26 (6248): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-14 10:44:26 (6248): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-14 10:44:26 (6248): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-14 10:44:31 (6248): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-14 10:44:31 (6248): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-14 10:44:36 (6248): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.000163 main     Log opened 2025-04-14T10:44:35.477689000Z
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.000236 main     OS Product: Linux
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.000255 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.000271 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.000291 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.000292 main     Process ID: 1350
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.000292 main     Package type: LINUX_64BITS_GENERIC
2025-04-14 10:44:36 (6248): Guest Log: 00:00:00.001064 main     5.2.32 r132073 started. Verbose level = 0
2025-04-14 10:44:37 (6248): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-14 10:44:37 (6248): Guest Log: [INFO] Mounting shared directory
2025-04-14 10:44:37 (6248): Guest Log: [INFO] Checking for init_data.xml
2025-04-14 10:44:38 (6248): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-14 10:44:38 (6248): Guest Log: [INFO] Detected branch: prod
2025-04-14 10:44:38 (6248): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-14 10:44:38 (6248): Guest Log: Copying input files
2025-04-14 10:44:39 (6248): Guest Log: Copied input files into RunAtlas.
2025-04-14 10:44:39 (6248): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-14 10:44:39 (6248): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-14 10:44:39 (6248): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-14 10:44:39 (6248): Guest Log: Further information can be found at the LHC@home message board.
2025-04-14 10:44:46 (6248): Guest Log: 00:00:10.005335 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 278 152 000ns (GuestNow=1 744 620 286 202 811 000 ns GuestLast=1 744 627 475 480 963 000 ns fSetTimeLastLoop=true )
2025-04-14 10:44:47 (6248): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-14 10:44:47 (6248): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-14 10:44:47 (6248): Guest Log: 2.6.3.0 1628 0 30292 144842 4 1 3119946 4096000 0 65024 0 0 n/a 1171 1553 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-14 10:44:48 (6248): Guest Log: copied the webapp to /var/www
2025-04-14 10:44:48 (6248): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-14 10:44:48 (6248): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-14 10:44:48 (6248): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-14 10:44:48 (6248): Guest Log:  *** Starting ATLAS job. (PandaID=6602093599 taskID=44075483) ***
2025-04-14 12:01:36 (6248): Guest Log:  *** Job finished ***
2025-04-14 12:01:36 (6248): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:23,880 | INFO     | [payload] failed_post thread has finished
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:23,912 | INFO     | [job] control thread has finished
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:26,517 | INFO     | [data] queue_monitor thread has finished
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:28,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461953374016)>', '<ExcThread(monitor, started 140461368915712)>']
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:29,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:29,667 | INFO     | [monitor] control thread has ended
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,642 | INFO     | all workflow threads have been joined
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,643 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,643 | INFO     | traces error code: 0
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,643 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,721 [wrapper] ==== pilot stdout END ====
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,726 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,731 [wrapper] pilotpid: 5977
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,736 [wrapper] Pilot exit status: 0
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,827 [wrapper] pandaids: 6602093599
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,854 [wrapper] cleanup supervisor_pilot   801 5978
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,859 [wrapper] Test setup, not cleaning
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,863 [wrapper] apfmon messages muted
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,867 [wrapper] ==== wrapper stdout END ====
2025-04-14 12:01:36 (6248): Guest Log: 2025-04-14 10:01:33,873 [wrapper] ==== wrapper stderr END ====
2025-04-14 12:01:36 (6248): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 12:01:36 (6248): Guest Log:     "exeErrorCode": 0,
2025-04-14 12:01:36 (6248): Guest Log:     "exeErrorDiag": "",
2025-04-14 12:01:36 (6248): Guest Log:     "pilotErrorCode": 0,
2025-04-14 12:01:36 (6248): Guest Log:     "pilotErrorDiag": "",
2025-04-14 12:01:36 (6248): Guest Log:  *** Listing of results directory ***
2025-04-14 12:01:36 (6248): Guest Log: total 192224
2025-04-14 12:01:36 (6248): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 13 12:50 pilot3.tar.gz
2025-04-14 12:01:36 (6248): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 13 13:05 runpilot2-wrapper.sh
2025-04-14 12:01:36 (6248): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 13 13:05 queuedata.json
2025-04-14 12:01:36 (6248): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 14 08:44 start_atlas.sh
2025-04-14 12:01:36 (6248): Guest Log: -rwxr-xr-x. 1 atlas atlas    508884 Apr 14 08:44 input.tar.gz
2025-04-14 12:01:36 (6248): Guest Log: -rwxr-xr-x. 1 atlas atlas      8817 Apr 14 08:44 init_data.xml
2025-04-14 12:01:36 (6248): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 14 08:44 EVNT.44075481._000186.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 12:01:36 (6248): Guest Log: -rw-r--r--. 1 atlas atlas      2576 Apr 14 08:44 pandaJob.out
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas       424 Apr 14 08:44 setup.sh.local
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas    981874 Apr 14 08:45 agis_schedconf.cvmfs.json
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 14 08:45 agis_ddmendpoints.agis.ALL.json
2025-04-14 12:01:36 (6248): Guest Log: drwx------. 4 atlas atlas      4096 Apr 14 08:45 pilot3
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas 191647336 Apr 14 10:00 HITS.44075483._004857.pool.root.1
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas      1026 Apr 14 10:01 memory_monitor_summary.json
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas    292262 Apr 14 10:01 log.44075483._004857.job.log.tgz.1
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas        95 Apr 14 10:01 pilot_heartbeat.json
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas      7709 Apr 14 10:01 heartbeat.json
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 14 10:01 pilotlog.txt
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas    417842 Apr 14 10:01 log.44075483._004857.job.log.1
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas       357 Apr 14 10:01 output.list
2025-04-14 12:01:36 (6248): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 14 10:01 runtime_log
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas    727040 Apr 14 10:01 result.tar.gz
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas       651 Apr 14 10:01 vtELDmHDCO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm0yTLDm3CsjRn.diag
2025-04-14 12:01:36 (6248): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Apr 14 10:01 runtime_log.err
2025-04-14 12:01:36 (6248): Guest Log: Looking for outputfile HITS.44075483._004857.pool.root.1
2025-04-14 12:01:36 (6248): Guest Log: HITS file was successfully produced
2025-04-14 12:01:36 (6248): Guest Log: -rw-------. 1 atlas atlas 191647336 Apr 14 10:00 /home/atlas/RunAtlas/HITS.44075483._004857.pool.root.1
2025-04-14 12:01:37 (6248): Guest Log: Successfully finished the ATLAS job!
2025-04-14 12:01:37 (6248): Guest Log: Copying the results back to the shared directory!
2025-04-14 12:01:37 (6248): Guest Log:  *** Contents of shared directory: ***
2025-04-14 12:01:37 (6248): Guest Log: total 407000
2025-04-14 12:01:37 (6248): Guest Log: -rwxrwxrwx. 1 root root 223845572 Apr 14 08:44 ATLAS.root_0
2025-04-14 12:01:37 (6248): Guest Log: -rwxrwxrwx. 1 root root 191647336 Apr 14  2025 HITS.pool.root.1
2025-04-14 12:01:37 (6248): Guest Log: -rwxrwxrwx. 1 root root      8817 Apr 14 08:44 init_data.xml
2025-04-14 12:01:37 (6248): Guest Log: -rwxrwxrwx. 1 root root    508884 Apr 14 00:34 input.tar.gz
2025-04-14 12:01:37 (6248): Guest Log: -rwxrwxrwx. 1 root root    727040 Apr 14  2025 result.tar.gz
2025-04-14 12:01:37 (6248): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 14 00:34 start_atlas.sh
2025-04-14 12:01:37 (6248): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 12:01:37 (6248): VM Completion File Detected.
2025-04-14 12:01:37 (6248): Powering off VM.
2025-04-14 12:01:38 (6248): Successfully stopped VM.
2025-04-14 12:01:38 (6248): Deregistering VM. (boinc_b0e3203dbefea385, slot#5)
2025-04-14 12:01:38 (6248): Removing network bandwidth throttle group from VM.
2025-04-14 12:01:38 (6248): Removing VM from VirtualBox.
12:01:43 (6248): called boinc_finish(0)

</stderr_txt>
]]>

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