Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:09:42 (14892): wrapper (7.7.26015): starting
20:09:42 (14892): wrapper: running run_atlas (--nthreads 10)
[2025-04-13 20:09:42] Arguments: --nthreads 10
[2025-04-13 20:09:42] Threads: 10
[2025-04-13 20:09:42] Checking for CVMFS
[2025-04-13 20:09:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-13 20:09:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-13 20:09:44] Running cvmfs_config stat atlas.cern.ch
[2025-04-13 20:09:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-13 20:09:45] 2.11.2.0 26642 34718 214912 144829 0 399 13390148 18432001 14498 130560 0 144661035 99.006 338637703 36643 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-13 20:09:45] CVMFS is ok
[2025-04-13 20:09:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-13 20:09:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-13 20:09:45] Further information can be found at the LHC@home message board.
[2025-04-13 20:09:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-13 20:09:45] Checking for apptainer binary...
[2025-04-13 20:09:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-13 20:09:45] Running /usr/bin/apptainer --version
[2025-04-13 20:09:45] apptainer version 1.3.2-1.el7
[2025-04-13 20:09:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-13 20:09:55] c-210-21.aglt2.org
[2025-04-13 20:09:55] apptainer works
[2025-04-13 20:09:55] Set ATHENA_PROC_NUMBER=10
[2025-04-13 20:09:55] Set ATHENA_CORE_NUMBER=10
[2025-04-13 20:09:55] Starting ATLAS job with PandaID=6602093935
[2025-04-13 20:09:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:10:57 (5645): wrapper (7.7.26015): starting
02:10:57 (5645): wrapper: running run_atlas (--nthreads 10)
[2025-04-14 02:10:57] Arguments: --nthreads 10
[2025-04-14 02:10:57] Threads: 10
[2025-04-14 02:10:57] This job has been restarted, cleaning up previous attempt
[2025-04-14 02:10:57] Checking for CVMFS
[2025-04-14 02:10:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-14 02:10:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-14 02:10:58] Running cvmfs_config stat atlas.cern.ch
[2025-04-14 02:10:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-14 02:10:58] 2.11.2.0 26642 35080 211320 144838 3 203 15655510 18432001 13942 130560 0 145515427 98.994 343345086 36538 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-14 02:10:58] CVMFS is ok
[2025-04-14 02:10:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-14 02:10:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-14 02:10:58] Further information can be found at the LHC@home message board.
[2025-04-14 02:10:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-14 02:10:58] Checking for apptainer binary...
[2025-04-14 02:10:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-14 02:10:58] Running /usr/bin/apptainer --version
[2025-04-14 02:10:58] apptainer version 1.3.2-1.el7
[2025-04-14 02:10:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-14 02:11:09] c-210-21.aglt2.org
[2025-04-14 02:11:09] apptainer works
[2025-04-14 02:11:10] Set ATHENA_PROC_NUMBER=10
[2025-04-14 02:11:10] Set ATHENA_CORE_NUMBER=10
[2025-04-14 02:11:10] Starting ATLAS job with PandaID=6602093935
[2025-04-14 02:11:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-14 10:46:27]  *** The last 200 lines of the pilot log: ***
[2025-04-14 10:46:27] 2025-04-14 14:46:08,621 | INFO     | sum of deviations: 379184252647.2309
[2025-04-14 10:46:27] 2025-04-14 14:46:08,622 | INFO     | mean x: 1744626547.0318725
[2025-04-14 10:46:27] 2025-04-14 14:46:08,622 | INFO     | mean y: 2510424.360557769
[2025-04-14 10:46:27] 2025-04-14 14:46:08,622 | INFO     | -- intersect: -16861481624.760887
[2025-04-14 10:46:27] 2025-04-14 14:46:08,626 | INFO     | intersect: -16861481624.760887
[2025-04-14 10:46:27] 2025-04-14 14:46:08,627 | INFO     | chi2: 8.916727191974502
[2025-04-14 10:46:27] 2025-04-14 14:46:08,628 | INFO     | sum of square deviations: 38067243301.561386
[2025-04-14 10:46:27] 2025-04-14 14:46:08,638 | INFO     | sum of deviations: 444047472069.12885
[2025-04-14 10:46:27] 2025-04-14 14:46:08,639 | INFO     | mean x: 1744626394.5372233
[2025-04-14 10:46:27] 2025-04-14 14:46:08,639 | INFO     | mean y: 2518893.2092555333
[2025-04-14 10:46:27] 2025-04-14 14:46:08,639 | INFO     | -- intersect: -20348230806.797447
[2025-04-14 10:46:27] 2025-04-14 14:46:08,639 | INFO     | intersect: -20348230806.797447
[2025-04-14 10:46:27] 2025-04-14 14:46:08,640 | INFO     | chi2: 7.380144149951843
[2025-04-14 10:46:27] 2025-04-14 14:46:08,640 | INFO     | current chi2=7.380144149951843 (change=17.232590040498934 %)
[2025-04-14 10:46:27] 2025-04-14 14:46:08,640 | INFO     | right removable region: 496
[2025-04-14 10:46:27] 2025-04-14 14:46:08,641 | INFO     | sum of square deviations: 38067080431.561455
[2025-04-14 10:46:27] 2025-04-14 14:46:08,648 | INFO     | sum of deviations: 224196912787.0868
[2025-04-14 10:46:27] 2025-04-14 14:46:08,649 | INFO     | mean x: 1744626699.5372233
[2025-04-14 10:46:27] 2025-04-14 14:46:08,649 | INFO     | mean y: 2530772.2655935613
[2025-04-14 10:46:27] 2025-04-14 14:46:08,649 | INFO     | -- intersect: -10272486790.62256
[2025-04-14 10:46:27] 2025-04-14 14:46:08,649 | INFO     | intersect: -10272486790.62256
[2025-04-14 10:46:27] 2025-04-14 14:46:08,650 | INFO     | chi2: 5.386120551213083
[2025-04-14 10:46:27] 2025-04-14 14:46:08,650 | INFO     | current chi2=5.386120551213083 (change=39.59531972604411 %)
[2025-04-14 10:46:27] 2025-04-14 14:46:08,651 | INFO     | sum of square deviations: 36929619530.10363
[2025-04-14 10:46:27] 2025-04-14 14:46:08,658 | INFO     | sum of deviations: 111368982015.82916
[2025-04-14 10:46:27] 2025-04-14 14:46:08,658 | INFO     | mean x: 1744626852.042683
[2025-04-14 10:46:27] 2025-04-14 14:46:08,658 | INFO     | mean y: 2545896.0081300815
[2025-04-14 10:46:27] 2025-04-14 14:46:08,658 | INFO     | -- intersect: -5258740815.897753
[2025-04-14 10:46:27] 2025-04-14 14:46:08,658 | INFO     | intersect: -5258740815.897753
[2025-04-14 10:46:27] 2025-04-14 14:46:08,659 | INFO     | chi2: 3.6230614297105728
[2025-04-14 10:46:27] 2025-04-14 14:46:08,659 | INFO     | current chi2=3.6230614297105728 (change=32.733376550686884 %)
[2025-04-14 10:46:27] 2025-04-14 14:46:08,660 | INFO     | sum of square deviations: 35815042778.61595
[2025-04-14 10:46:27] 2025-04-14 14:46:08,666 | INFO     | sum of deviations: 5686523812.948601
[2025-04-14 10:46:27] 2025-04-14 14:46:08,666 | INFO     | mean x: 1744627004.5482547
[2025-04-14 10:46:27] 2025-04-14 14:46:08,666 | INFO     | mean y: 2560355.704312115
[2025-04-14 10:46:27] 2025-04-14 14:46:08,666 | INFO     | -- intersect: -274442329.1005285
[2025-04-14 10:46:27] 2025-04-14 14:46:08,667 | INFO     | intersect: -274442329.1005285
[2025-04-14 10:46:27] 2025-04-14 14:46:08,667 | INFO     | chi2: 2.0903920756286745
[2025-04-14 10:46:27] 2025-04-14 14:46:08,667 | INFO     | current chi2=2.0903920756286745 (change=42.303156703703344 %)
[2025-04-14 10:46:27] 2025-04-14 14:46:08,668 | INFO     | sum of square deviations: 34723117614.59758
[2025-04-14 10:46:27] 2025-04-14 14:46:08,674 | INFO     | sum of deviations: -45372987490.38589
[2025-04-14 10:46:27] 2025-04-14 14:46:08,674 | INFO     | mean x: 1744627157.053942
[2025-04-14 10:46:27] 2025-04-14 14:46:08,674 | INFO     | mean y: 2567478.8609958505
[2025-04-14 10:46:27] 2025-04-14 14:46:08,675 | INFO     | -- intersect: 2282286340.830856
[2025-04-14 10:46:27] 2025-04-14 14:46:08,675 | INFO     | intersect: 2282286340.830856
[2025-04-14 10:46:27] 2025-04-14 14:46:08,675 | INFO     | chi2: 1.7170256408525217
[2025-04-14 10:46:27] 2025-04-14 14:46:08,676 | INFO     | current chi2=1.7170256408525217 (change=17.861072050986643 %)
[2025-04-14 10:46:27] 2025-04-14 14:46:08,676 | INFO     | left removable region: 40
[2025-04-14 10:46:27] 2025-04-14 14:46:08,676 | INFO     | sum of square deviations: 29401766406.280785
[2025-04-14 10:46:27] 2025-04-14 14:46:08,682 | INFO     | sum of deviations: 5321888042.587717
[2025-04-14 10:46:27] 2025-04-14 14:46:08,682 | INFO     | mean x: 1744627584.0614035
[2025-04-14 10:46:27] 2025-04-14 14:46:08,682 | INFO     | mean y: 2579101.0504385964
[2025-04-14 10:46:27] 2025-04-14 14:46:08,682 | INFO     | -- intersect: -313208479.5352532
[2025-04-14 10:46:27] 2025-04-14 14:46:08,682 | INFO     | intersect: -313208479.5352532
[2025-04-14 10:46:27] 2025-04-14 14:46:08,683 | INFO     | chi2: 0.029712804259351095
[2025-04-14 10:46:27] 2025-04-14 14:46:08,683 | INFO     | -- intersect: -313208479.5352532
[2025-04-14 10:46:27] 2025-04-14 14:46:08,683 | INFO     | current memory leak: 0.18 B/s (using 456 data points, chi2=0.03)
[2025-04-14 10:46:27] 2025-04-14 14:46:08,684 | INFO     | ..............................
[2025-04-14 10:46:27] 2025-04-14 14:46:08,684 | INFO     | . Timing measurements:
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | . get job = 0 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | . initial setup = 6 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | . payload setup = 36 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | . stage-in = 0 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | . payload execution = 30649 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | . stage-out = 7 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | . log creation = 1 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,685 | INFO     | ..............................
[2025-04-14 10:46:27] 2025-04-14 14:46:08,912 | INFO     | 
[2025-04-14 10:46:27] 2025-04-14 14:46:08,912 | INFO     | job summary report
[2025-04-14 10:46:27] 2025-04-14 14:46:08,912 | INFO     | --------------------------------------------------
[2025-04-14 10:46:27] 2025-04-14 14:46:08,912 | INFO     | PanDA job id: 6602093935
[2025-04-14 10:46:27] 2025-04-14 14:46:08,912 | INFO     | task id: 44075483
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | errors: (none)
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | pilot state: finished 
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | transexitcode: 0
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | exeerrorcode: 0
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | exeerrordiag: 
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | exitcode: 0
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | exitmsg: OK
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | cpuconsumptiontime: 53952 s
[2025-04-14 10:46:27] 2025-04-14 14:46:08,913 | INFO     | nevents: 400
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | neventsw: 0
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | pid: 35706
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | pgrp: 35706
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | corecount: 10
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | event service: False
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | sizes: {0: 2417133, 1: 2417388, 2: 2417388, 12: 2417416, 23: 2417444, 32: 2417678, 34: 2417834, 30691: 2455013, 30692: 2455012, 30700: 2464009, 30702: 2464065, 307
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | --------------------------------------------------
[2025-04-14 10:46:27] 2025-04-14 14:46:08,914 | INFO     | 
[2025-04-14 10:46:27] 2025-04-14 14:46:08,915 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-14 10:46:27] 2025-04-14 14:46:09,128 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,129 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,131 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-14 10:46:27] 2025-04-14 14:46:09,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,139 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-14 10:46:27] 2025-04-14 14:46:09,139 | INFO     | job 6602093935 has completed (purged errors)
[2025-04-14 10:46:27] 2025-04-14 14:46:09,140 | INFO     | overall cleanup function is called
[2025-04-14 10:46:27] 2025-04-14 14:46:10,159 | INFO     | --- collectZombieJob: --- 10, [35706]
[2025-04-14 10:46:27] 2025-04-14 14:46:10,159 | INFO     | zombie collector waiting for pid 35706
[2025-04-14 10:46:27] 2025-04-14 14:46:10,160 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-14 10:46:27] 2025-04-14 14:46:10,160 | INFO     | collected zombie processes
[2025-04-14 10:46:27] 2025-04-14 14:46:10,160 | INFO     | will attempt to kill all subprocesses of pid=35706
[2025-04-14 10:46:27] 2025-04-14 14:46:12,290 | INFO     | process IDs to be killed: [35706] (in reverse order)
[2025-04-14 10:46:27] 2025-04-14 14:46:13,483 | WARNING  | found no corresponding commands to process id(s)
[2025-04-14 10:46:27] 2025-04-14 14:46:13,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-14 10:46:27] 2025-04-14 14:46:13,508 | INFO     | did not find any defunct processes belonging to 35706
[2025-04-14 10:46:27] 2025-04-14 14:46:13,543 | INFO     | did not find any defunct processes belonging to 35706
[2025-04-14 10:46:27] 2025-04-14 14:46:13,543 | INFO     | ready for new job
[2025-04-14 10:46:27] 2025-04-14 14:46:13,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-14 10:46:27] 2025-04-14 14:46:13,546 | INFO     | **************************************
[2025-04-14 10:46:27] 2025-04-14 14:46:13,547 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-14 10:46:27] 2025-04-14 14:46:13,547 | INFO     | **************************************
[2025-04-14 10:46:27] 2025-04-14 14:46:13,547 | INFO     | 
[2025-04-14 10:46:27] 2025-04-14 14:46:13,553 | INFO     | architecture information:
[2025-04-14 10:46:27] 2025-04-14 14:46:13,559 | INFO     | executing command: cat /etc/os-release
[2025-04-14 10:46:27] 2025-04-14 14:46:13,712 | INFO     | cat /etc/os-release:
[2025-04-14 10:46:27] NAME="CentOS Linux"
[2025-04-14 10:46:27] VERSION="7 (Core)"
[2025-04-14 10:46:27] ID="centos"
[2025-04-14 10:46:27] ID_LIKE="rhel fedora"
[2025-04-14 10:46:27] VERSION_ID="7"
[2025-04-14 10:46:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-14 10:46:27] ANSI_COLOR="0;31"
[2025-04-14 10:46:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-14 10:46:27] HOME_URL="https://www.centos.org/"
[2025-04-14 10:46:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-14 10:46:27] 
[2025-04-14 10:46:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-14 10:46:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-14 10:46:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-14 10:46:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-14 10:46:27] 
[2025-04-14 10:46:27] 2025-04-14 14:46:13,712 | INFO     | **************************************
[2025-04-14 10:46:27] 2025-04-14 14:46:14,215 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-14 10:46:27] 2025-04-14 14:46:14,325 | INFO     | sufficient remaining disk space (56949211136 B)
[2025-04-14 10:46:27] 2025-04-14 14:46:14,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-14 10:46:27] 2025-04-14 14:46:14,326 | INFO     | current server update state: UPDATING_FINAL
[2025-04-14 10:46:27] 2025-04-14 14:46:14,326 | INFO     | update_server=False
[2025-04-14 10:46:27] 2025-04-14 14:46:14,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-14 10:46:27] 2025-04-14 14:46:14,326 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-14 10:46:27] 2025-04-14 14:46:14,326 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-14 10:46:27] 2025-04-14 14:46:14,327 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-14 10:46:27] 2025-04-14 14:46:14,327 | INFO     | found 0 job(s) in 20 queues
[2025-04-14 10:46:27] 2025-04-14 14:46:14,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-14 10:46:27] 2025-04-14 14:46:14,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-14 10:46:27] 2025-04-14 14:46:14,503 | INFO     | all data control threads have been joined
[2025-04-14 10:46:27] 2025-04-14 14:46:14,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-14 10:46:27] 2025-04-14 14:46:14,554 | INFO     | aborting loop
[2025-04-14 10:46:27] 2025-04-14 14:46:14,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-14 10:46:27] 2025-04-14 14:46:15,107 | INFO     | all payload control threads have been joined
[2025-04-14 10:46:27] 2025-04-14 14:46:15,335 | INFO     | [job] retrieve thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:15,341 | INFO     | [job] queue monitor thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:15,430 | INFO     | [data] copytool_in thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:15,473 | INFO     | [job] create_data_payload thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:15,508 | INFO     | [data] control thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:15,566 | INFO     | [job] job monitor thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:15,728 | INFO     | all job control threads have been joined
[2025-04-14 10:46:27] 2025-04-14 14:46:16,113 | INFO     | [payload] control thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,165 | INFO     | [payload] execute_payloads thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,177 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,261 | INFO     | [payload] validate_post thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,711 | INFO     | [data] copytool_out thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,734 | INFO     | [job] control thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,776 | INFO     | [payload] failed_post thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,796 | INFO     | [payload] validate_pre thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:16,804 | INFO     | [job] validate thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:18,349 | INFO     | [data] queue_monitor thread has finished
[2025-04-14 10:46:27] 2025-04-14 14:46:18,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625826772800)>', '<ExcThread(monitor, started 139625377011456)>']
[2025-04-14 10:46:27] 2025-04-14 14:46:19,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-14 10:46:27] 2025-04-14 14:46:19,406 | INFO     | [monitor] control thread has ended
[2025-04-14 10:46:27] 2025-04-14 14:46:23,846 | INFO     | all workflow threads have been joined
[2025-04-14 10:46:27] 2025-04-14 14:46:23,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-14 10:46:27] 2025-04-14 14:46:23,850 | INFO     | traces error code: 0
[2025-04-14 10:46:27] 2025-04-14 14:46:23,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-14 10:46:27] 2025-04-14 14:46:25,049 [wrapper] ==== pilot stdout END ====
[2025-04-14 10:46:27] 2025-04-14 14:46:25,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-14 10:46:27] 2025-04-14 14:46:25,126 [wrapper] pilotpid: 14758
[2025-04-14 10:46:27] 2025-04-14 14:46:25,150 [wrapper] Pilot exit status: 0
[2025-04-14 10:46:27] 2025-04-14 14:46:25,366 [wrapper] pandaids: 6602093935 6602093935
[2025-04-14 10:46:27] 2025-04-14 14:46:25,794 [wrapper] cleanup supervisor_pilot  7265 14759
[2025-04-14 10:46:27] 2025-04-14 14:46:25,798 [wrapper] Test setup, not cleaning
[2025-04-14 10:46:27] 2025-04-14 14:46:25,820 [wrapper] apfmon messages muted
[2025-04-14 10:46:27] 2025-04-14 14:46:25,849 [wrapper] ==== wrapper stdout END ====
[2025-04-14 10:46:27] 2025-04-14 14:46:25,875 [wrapper] ==== wrapper stderr END ====
[2025-04-14 10:46:27]  *** Error codes and diagnostics ***
[2025-04-14 10:46:27]     "exeErrorCode": 0,
[2025-04-14 10:46:27]     "exeErrorDiag": "",
[2025-04-14 10:46:27]     "pilotErrorCode": 0,
[2025-04-14 10:46:27]     "pilotErrorDiag": "",
[2025-04-14 10:46:27]  *** Listing of results directory ***
[2025-04-14 10:46:27] total 638636
[2025-04-14 10:46:27] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas    495897 Apr 13 09:20 pilot3.tar.gz
[2025-04-14 10:46:27] -rwx------ 1 boincer umatlas     37140 Apr 13 09:44 runpilot2-wrapper.sh
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas      5111 Apr 13 09:44 queuedata.json
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas       100 Apr 13 20:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-14 10:46:27] -rwxr-xr-x 1 boincer umatlas      7986 Apr 13 20:09 run_atlas
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas       105 Apr 13 20:09 job.xml
[2025-04-14 10:46:27] -rw-r--r-- 3 boincer umatlas 225696506 Apr 13 20:09 EVNT.44075481._000196.pool.root.1
[2025-04-14 10:46:27] -rw-r--r-- 3 boincer umatlas 225696506 Apr 13 20:09 ATLAS.root_0
[2025-04-14 10:46:27] -rw-r--r-- 2 boincer umatlas     17569 Apr 13 20:09 start_atlas.sh
[2025-04-14 10:46:27] drwxrwx--x 2 boincer umatlas      4096 Apr 13 20:09 shared
[2025-04-14 10:46:27] -rw-r--r-- 2 boincer umatlas    508885 Apr 13 20:09 input.tar.gz
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas         0 Apr 13 20:09 boinc_lockfile
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas      2576 Apr 14 02:11 pandaJob.out
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas       467 Apr 14 02:11 setup.sh.local
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas    985912 Apr 14 02:12 agis_schedconf.cvmfs.json
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas 193096978 Apr 14 10:41 HITS.44075483._005100.pool.root.1
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas       531 Apr 14 10:42 boinc_task_state.xml
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas      1058 Apr 14 10:44 memory_monitor_summary.json
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas   1603529 Apr 14 10:44 agis_ddmendpoints.agis.ALL.json
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas    553906 Apr 14 10:44 log.44075483._005100.job.log.tgz.1
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas      6228 Apr 14 10:45 init_data.xml
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas        96 Apr 14 10:45 pilot_heartbeat.json
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas      7754 Apr 14 10:46 heartbeat.json
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas      8192 Apr 14 10:46 boinc_mmap_file
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas        28 Apr 14 10:46 wrapper_checkpoint.txt
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas      4476 Apr 14 10:46 pilotlog.txt
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas   2260319 Apr 14 10:46 log.44075483._005100.job.log.1
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas       357 Apr 14 10:46 output.list
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas       620 Apr 14 10:46 runtime_log
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas   2836480 Apr 14 10:46 result.tar.gz
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas     11506 Apr 14 10:46 runtime_log.err
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas       789 Apr 14 10:46 CCcMDm5nCO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmw1TLDmGXLTJn.diag
[2025-04-14 10:46:27] -rw-r--r-- 1 boincer umatlas     23038 Apr 14 10:46 stderr.txt
[2025-04-14 10:46:27] HITS file was successfully produced:
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas 193096978 Apr 14 10:41 shared/HITS.pool.root.1
[2025-04-14 10:46:27]  *** Contents of shared directory: ***
[2025-04-14 10:46:27] total 412276
[2025-04-14 10:46:27] -rw-r--r-- 3 boincer umatlas 225696506 Apr 13 20:09 ATLAS.root_0
[2025-04-14 10:46:27] -rw-r--r-- 2 boincer umatlas     17569 Apr 13 20:09 start_atlas.sh
[2025-04-14 10:46:27] -rw-r--r-- 2 boincer umatlas    508885 Apr 13 20:09 input.tar.gz
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas 193096978 Apr 14 10:41 HITS.pool.root.1
[2025-04-14 10:46:27] -rw------- 1 boincer umatlas   2836480 Apr 14 10:46 result.tar.gz
10:46:29 (5645): run_atlas exited; CPU time 55086.430995
10:46:29 (5645): called boinc_finish(0)

</stderr_txt>
]]>

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