Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 19:18:09 (11348): Detected: vboxwrapper 26206
2025-04-13 19:18:09 (11348): Detected: BOINC client v7.20.2
2025-04-13 19:18:11 (11348): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-04-13 19:18:11 (11348): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 19:18:12 (11348): Create VM. (boinc_05def75faa0b86a8, slot#3)
2025-04-13 19:18:13 (11348): Setting Memory Size for VM. (4400MB)
2025-04-13 19:18:13 (11348): Setting CPU Count for VM. (4)
2025-04-13 19:18:13 (11348): Setting Chipset Options for VM.
2025-04-13 19:18:14 (11348): Setting Graphics Controller Options for VM.
2025-04-13 19:18:14 (11348): Setting Boot Options for VM.
2025-04-13 19:18:14 (11348): Setting Network Configuration for NAT.
2025-04-13 19:18:14 (11348): Enabling VM Network Access.
2025-04-13 19:18:15 (11348): Disabling USB Support for VM.
2025-04-13 19:18:15 (11348): Disabling COM Port Support for VM.
2025-04-13 19:18:15 (11348): Disabling LPT Port Support for VM.
2025-04-13 19:18:16 (11348): Disabling Audio Support for VM.
2025-04-13 19:18:16 (11348): Disabling Clipboard Support for VM.
2025-04-13 19:18:16 (11348): Disabling Drag and Drop Support for VM.
2025-04-13 19:18:16 (11348): Adding storage controller(s) to VM.
2025-04-13 19:18:17 (11348): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 19:18:18 (11348): Adding VirtualBox Guest Additions to VM.
2025-04-13 19:18:18 (11348): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 19:18:18 (11348): forwarding host port 52506 to guest port 80
2025-04-13 19:18:19 (11348): Enabling remote desktop for VM.
2025-04-13 19:18:19 (11348): Required extension pack not installed, remote desktop not enabled.
2025-04-13 19:18:19 (11348): Enabling shared directory for VM.
2025-04-13 19:18:20 (11348): Starting VM using VBoxManage interface. (boinc_05def75faa0b86a8, slot#3)
2025-04-13 19:18:27 (11348): Successfully started VM. (PID = '13380')
2025-04-13 19:18:27 (11348): Reporting VM Process ID to BOINC.
2025-04-13 19:18:27 (11348): Guest Log: BIOS: VirtualBox 6.1.34
2025-04-13 19:18:27 (11348): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 19:18:27 (11348): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 19:18:27 (11348): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 19:18:27 (11348): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 19:18:27 (11348): Detected: Web Application Enabled (http://localhost:52506)
2025-04-13 19:18:27 (11348): Preference change detected
2025-04-13 19:18:27 (11348): Setting CPU throttle for VM. (100%)
2025-04-13 19:18:27 (11348): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 19:18:29 (11348): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 19:18:29 (11348): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 19:18:32 (11348): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 19:18:32 (11348): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 19:18:32 (11348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 19:18:41 (11348): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 19:18:41 (11348): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 19:18:54 (11348): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.000267 main     Log opened 2025-04-13T19:18:52.430481000Z
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.000417 main     OS Product: Linux
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.000454 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.000488 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.000524 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.000525 main     Process ID: 1306
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.000525 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 19:18:54 (11348): Guest Log: 00:00:00.002375 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 19:18:54 (11348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 19:18:54 (11348): Guest Log: [INFO] Mounting shared directory
2025-04-13 19:18:54 (11348): Guest Log: [INFO] Checking for init_data.xml
2025-04-13 19:18:59 (11348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-13 19:18:59 (11348): Guest Log: [INFO] Detected branch: prod
2025-04-13 19:18:59 (11348): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-13 19:18:59 (11348): Guest Log: Copying input files
2025-04-13 19:19:01 (11348): Guest Log: Copied input files into RunAtlas.
2025-04-13 19:19:02 (11348): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-13 19:19:02 (11348): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-13 19:19:02 (11348): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-13 19:19:02 (11348): Guest Log: Further information can be found at the LHC@home message board.
2025-04-13 19:19:04 (11348): Guest Log: 00:00:10.007525 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 919 596 000ns (GuestNow=1 744 586 343 356 631 000 ns GuestLast=1 744 571 932 437 035 000 ns fSetTimeLastLoop=true )
2025-04-13 19:19:10 (11348): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-13 19:19:10 (11348): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-13 19:19:10 (11348): Guest Log: 2.6.3.0 1585 0 30196 144829 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-13 19:19:15 (11348): Guest Log: copied the webapp to /var/www
2025-04-13 19:19:15 (11348): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-13 19:19:15 (11348): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-13 19:19:16 (11348): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-13 19:19:16 (11348): Guest Log:  *** Starting ATLAS job. (PandaID=6602100739 taskID=44075483) ***
2025-04-13 21:03:50 (11348): Status Report: Elapsed Time: '6000.503979'
2025-04-13 21:03:50 (11348): Status Report: CPU Time: '20423.718750'
2025-04-13 22:50:24 (11348): Status Report: Elapsed Time: '12001.029425'
2025-04-13 22:50:24 (11348): Status Report: CPU Time: '45660.781250'
2025-04-14 00:08:33 (11348): Guest Log:  *** Job finished ***
2025-04-14 00:08:33 (11348): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:18,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:19,198 | INFO     | [job] queue monitor thread has finished
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:19,951 | INFO     | [data] queue_monitor thread has finished
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:20,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140143920154432)>', '<ExcThread(monitor, started 140143499405056)>']
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:20,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:20,119 | INFO     | [monitor] control thread has ended
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,043 | INFO     | all workflow threads have been joined
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,044 | INFO     | end of generic workflow (traces error code: 0)
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,044 | INFO     | traces error code: 0
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,390 [wrapper] ==== pilot stdout END ====
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,406 [wrapper] ==== wrapper stdout RESUME ====
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,417 [wrapper] pilotpid: 5928
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,427 [wrapper] Pilot exit status: 0
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,530 [wrapper] pandaids: 6602100739
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,585 [wrapper] cleanup supervisor_pilot 19889 5929
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,594 [wrapper] Test setup, not cleaning
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,604 [wrapper] apfmon messages muted
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,613 [wrapper] ==== wrapper stdout END ====
2025-04-14 00:08:33 (11348): Guest Log: 2025-04-14 04:08:25,622 [wrapper] ==== wrapper stderr END ====
2025-04-14 00:08:33 (11348): Guest Log:  *** Error codes and diagnostics ***
2025-04-14 00:08:33 (11348): Guest Log:     "exeErrorCode": 0,
2025-04-14 00:08:33 (11348): Guest Log:     "exeErrorDiag": "",
2025-04-14 00:08:33 (11348): Guest Log:     "pilotErrorCode": 0,
2025-04-14 00:08:33 (11348): Guest Log:     "pilotErrorDiag": "",
2025-04-14 00:08:33 (11348): Guest Log:  *** Listing of results directory ***
2025-04-14 00:08:33 (11348): Guest Log: total 197180
2025-04-14 00:08:33 (11348): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 13 19:18 pilot3.tar.gz
2025-04-14 00:08:33 (11348): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 13 19:26 queuedata.json
2025-04-14 00:08:33 (11348): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 13 19:28 runpilot2-wrapper.sh
2025-04-14 00:08:33 (11348): Guest Log: -rwxr-xr-x. 1 atlas atlas      8656 Apr 13 23:19 init_data.xml
2025-04-14 00:08:33 (11348): Guest Log: -rwxr-xr-x. 1 atlas atlas    508889 Apr 13 23:19 input.tar.gz
2025-04-14 00:08:33 (11348): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 13 23:19 start_atlas.sh
2025-04-14 00:08:33 (11348): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 13 23:19 EVNT.44075481._000326.pool.root.1 -> /data/./ATLAS.root_0
2025-04-14 00:08:33 (11348): Guest Log: -rw-r--r--. 1 atlas atlas      2575 Apr 13 23:19 pandaJob.out
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas       424 Apr 13 23:19 setup.sh.local
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas    985904 Apr 13 23:20 agis_schedconf.cvmfs.json
2025-04-14 00:08:33 (11348): Guest Log: drwx------. 4 atlas atlas      4096 Apr 13 23:20 pilot3
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas 194541204 Apr 14 04:07 HITS.44075483._008345.pool.root.1
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas        95 Apr 14 04:07 pilot_heartbeat.json
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas      1038 Apr 14 04:07 memory_monitor_summary.json
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 14 04:07 agis_ddmendpoints.agis.ALL.json
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas    346193 Apr 14 04:07 log.44075483._008345.job.log.tgz.1
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas      7734 Apr 14 04:08 heartbeat.json
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 14 04:08 pilotlog.txt
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas   1451565 Apr 14 04:08 log.44075483._008345.job.log.1
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas       357 Apr 14 04:08 output.list
2025-04-14 00:08:33 (11348): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 14 04:08 runtime_log
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas   1812480 Apr 14 04:08 result.tar.gz
2025-04-14 00:08:33 (11348): Guest Log: -rw-r--r--. 1 atlas atlas     10981 Apr 14 04:08 runtime_log.err
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas       671 Apr 14 04:08 bUALDmfBIO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmtdULDmFCsaWn.diag
2025-04-14 00:08:33 (11348): Guest Log: Looking for outputfile HITS.44075483._008345.pool.root.1
2025-04-14 00:08:33 (11348): Guest Log: HITS file was successfully produced
2025-04-14 00:08:33 (11348): Guest Log: -rw-------. 1 atlas atlas 194541204 Apr 14 04:07 /home/atlas/RunAtlas/HITS.44075483._008345.pool.root.1
2025-04-14 00:08:35 (11348): Guest Log: Successfully finished the ATLAS job!
2025-04-14 00:08:35 (11348): Guest Log: Copying the results back to the shared directory!
2025-04-14 00:08:35 (11348): Guest Log:  *** Contents of shared directory: ***
2025-04-14 00:08:35 (11348): Guest Log: total 409656
2025-04-14 00:08:35 (11348): Guest Log: -rwxrwxrwx. 1 root root 222584577 Apr 13 23:18 ATLAS.root_0
2025-04-14 00:08:35 (11348): Guest Log: -rwxrwxrwx. 1 root root 194541204 Apr 14  2025 HITS.pool.root.1
2025-04-14 00:08:35 (11348): Guest Log: -rwxrwxrwx. 1 root root      8656 Apr 13 23:18 init_data.xml
2025-04-14 00:08:35 (11348): Guest Log: -rwxrwxrwx. 1 root root    508889 Apr 13 23:16 input.tar.gz
2025-04-14 00:08:35 (11348): Guest Log: -rwxrwxrwx. 1 root root   1812480 Apr 14  2025 result.tar.gz
2025-04-14 00:08:35 (11348): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 13 23:16 start_atlas.sh
2025-04-14 00:08:35 (11348): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-14 00:08:35 (11348): VM Completion File Detected.
2025-04-14 00:08:35 (11348): Powering off VM.
2025-04-14 00:08:37 (11348): Successfully stopped VM.
2025-04-14 00:08:37 (11348): Deregistering VM. (boinc_05def75faa0b86a8, slot#3)
2025-04-14 00:08:38 (11348): Removing network bandwidth throttle group from VM.
2025-04-14 00:08:38 (11348): Removing VM from VirtualBox.
00:08:43 (11348): called boinc_finish(0)

</stderr_txt>
]]>

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