Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 17:34:34 (6184): Detected: vboxwrapper 26206
2025-04-13 17:34:34 (6184): Detected: BOINC client v8.0.2
2025-04-13 17:34:36 (6184): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-13 17:34:36 (6184): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 17:34:36 (6184): Create VM. (boinc_beca81afc1bb674d, slot#0)
2025-04-13 17:34:37 (6184): Setting Memory Size for VM. (4100MB)
2025-04-13 17:34:37 (6184): Setting CPU Count for VM. (1)
2025-04-13 17:34:38 (6184): Setting Chipset Options for VM.
2025-04-13 17:34:38 (6184): Setting Graphics Controller Options for VM.
2025-04-13 17:34:38 (6184): Setting Boot Options for VM.
2025-04-13 17:34:39 (6184): Setting Network Configuration for NAT.
2025-04-13 17:34:39 (6184): Enabling VM Network Access.
2025-04-13 17:34:39 (6184): Disabling USB Support for VM.
2025-04-13 17:34:40 (6184): Disabling COM Port Support for VM.
2025-04-13 17:34:40 (6184): Disabling LPT Port Support for VM.
2025-04-13 17:34:40 (6184): Disabling Audio Support for VM.
2025-04-13 17:34:41 (6184): Disabling Clipboard Support for VM.
2025-04-13 17:34:41 (6184): Disabling Drag and Drop Support for VM.
2025-04-13 17:34:41 (6184): Adding storage controller(s) to VM.
2025-04-13 17:34:42 (6184): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 17:34:46 (6184): Adding VirtualBox Guest Additions to VM.
2025-04-13 17:34:46 (6184): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 17:34:47 (6184): forwarding host port 56383 to guest port 80
2025-04-13 17:34:47 (6184): Enabling remote desktop for VM.
2025-04-13 17:34:47 (6184): Required extension pack not installed, remote desktop not enabled.
2025-04-13 17:34:47 (6184): Enabling shared directory for VM.
2025-04-13 17:34:48 (6184): Starting VM using VBoxManage interface. (boinc_beca81afc1bb674d, slot#0)
2025-04-13 17:35:12 (6184): Successfully started VM. (PID = '4908')
2025-04-13 17:35:12 (6184): Reporting VM Process ID to BOINC.
2025-04-13 17:35:12 (6184): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-13 17:35:13 (6184): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 17:35:13 (6184): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 17:35:14 (6184): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 17:35:14 (6184): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 17:35:14 (6184): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 17:35:14 (6184): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 17:35:14 (6184): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 17:35:14 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 17:35:15 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 17:35:15 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 17:35:15 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 17:35:15 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 17:35:16 (6184): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 17:35:16 (6184): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 17:35:16 (6184): Detected: Web Application Enabled (http://localhost:56383)
2025-04-13 17:35:16 (6184): Preference change detected
2025-04-13 17:35:16 (6184): Setting CPU throttle for VM. (100%)
2025-04-13 17:35:17 (6184): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 17:35:32 (6184): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 17:35:32 (6184): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 17:36:20 (6184): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.000608 main     Log opened 2025-04-13T17:36:18.208229000Z
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.000944 main     OS Product: Linux
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.001097 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.001190 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.001290 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.001293 main     Process ID: 1273
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.001296 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 17:36:20 (6184): Guest Log: 00:00:00.005909 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 17:36:21 (6184): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 17:36:21 (6184): Guest Log: [INFO] Mounting shared directory
2025-04-13 17:36:21 (6184): Guest Log: [INFO] Checking for init_data.xml
2025-04-13 17:36:30 (6184): Guest Log: 00:00:10.085952 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 090 107 000ns (GuestNow=1 744 580 190 382 780 000 ns GuestLast=1 744 565 778 292 673 000 ns fSetTimeLastLoop=true )
2025-04-13 17:36:33 (6184): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-13 17:36:33 (6184): Guest Log: [INFO] Detected branch: prod
2025-04-13 17:36:34 (6184): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-13 17:36:34 (6184): Guest Log: Copying input files
2025-04-13 17:36:39 (6184): Guest Log: Copied input files into RunAtlas.
2025-04-13 17:36:40 (6184): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-13 17:36:40 (6184): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-13 17:36:40 (6184): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-13 17:36:40 (6184): Guest Log: Further information can be found at the LHC@home message board.
2025-04-13 17:36:55 (6184): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-13 17:36:56 (6184): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-13 17:36:56 (6184): Guest Log: 2.6.3.0 1553 0 32124 144825 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-13 17:36:59 (6184): Guest Log: copied the webapp to /var/www
2025-04-13 17:36:59 (6184): Guest Log: core_number=1
2025-04-13 17:37:00 (6184): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-13 17:37:00 (6184): Guest Log:  *** Starting ATLAS job. (PandaID=6600996619 taskID=44075483) ***
2025-04-13 19:15:24 (6184): Status Report: Elapsed Time: '6000.844852'
2025-04-13 19:15:24 (6184): Status Report: CPU Time: '1947.656250'
2025-04-13 20:55:30 (6184): Status Report: Elapsed Time: '12000.844852'
2025-04-13 20:55:30 (6184): Status Report: CPU Time: '2581.312500'
2025-04-13 21:41:00 (6184): Guest Log:  *** Job finished ***
2025-04-13 21:41:00 (6184): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:13,515 | INFO     | [data] queue_monitor thread has finished
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:13,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589981660992)>', '<ExcThread(monitor, started 140589664278272)>']
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:14,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:14,336 | INFO     | [monitor] control thread has ended
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,523 | INFO     | all workflow threads have been joined
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,534 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,536 | INFO     | traces error code: 0
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,796 [wrapper] ==== pilot stdout END ====
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,809 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,825 [wrapper] pilotpid: 5862
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:37:18,838 [wrapper] Pilot exit status: 0
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:38:38,988 [wrapper] supervise_pilot (15 min periods counter: 17)
2025-04-13 21:41:00 (6184): Guest Log: ./runpilot2-wrapper.sh: line 1045: /usr/bin/xargs: Input/output error
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:40:59,710 [wrapper] pandaids: 
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:40:59,812 [wrapper] cleanup supervisor_pilot  5874 5863
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:40:59,827 [wrapper] Test setup, not cleaning
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:40:59,840 [wrapper] apfmon messages muted
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:40:59,854 [wrapper] ==== wrapper stdout END ====
2025-04-13 21:41:00 (6184): Guest Log: 2025-04-14 01:40:59,868 [wrapper] ==== wrapper stderr END ====
2025-04-13 21:41:00 (6184): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 21:41:00 (6184): Guest Log:     "exeErrorCode": 65,
2025-04-13 21:41:00 (6184): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ServiceManager                                               0   FATAL No Service factory for PartPropSvc available.\"",
2025-04-13 21:41:00 (6184): Guest Log:     "pilotErrorCode": 1305,
2025-04-13 21:41:00 (6184): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ServiceManager                                               0   FATAL No Service f",
2025-04-13 21:41:00 (6184): Guest Log:  *** Listing of results directory ***
2025-04-13 21:41:00 (6184): Guest Log: total 6640
2025-04-13 21:41:00 (6184): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 13 10:15 queuedata.json
2025-04-13 21:41:00 (6184): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 13 10:16 pilot3.tar.gz
2025-04-13 21:41:00 (6184): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 13 10:18 runpilot2-wrapper.sh
2025-04-13 21:41:00 (6184): Guest Log: -rwxr-xr-x. 1 atlas atlas    8375 Apr 13 21:36 init_data.xml
2025-04-13 21:41:00 (6184): Guest Log: -rwxr-xr-x. 1 atlas atlas  508894 Apr 13 21:36 input.tar.gz
2025-04-13 21:41:00 (6184): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 13 21:36 start_atlas.sh
2025-04-13 21:41:00 (6184): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 13 21:36 EVNT.44075481._000055.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 21:41:00 (6184): Guest Log: -rw-r--r--. 1 atlas atlas    2574 Apr 13 21:37 pandaJob.out
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas     424 Apr 13 21:37 setup.sh.local
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas  985904 Apr 13 21:38 agis_schedconf.cvmfs.json
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas 1603529 Apr 13 21:39 agis_ddmendpoints.agis.ALL.json
2025-04-13 21:41:00 (6184): Guest Log: drwx------. 4 atlas atlas    4096 Apr 13 21:39 pilot3
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas    1019 Apr 13 22:17 memory_monitor_summary.json
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas  104901 Apr 13 22:21 log.44075483._003919.job.log.tgz.1
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas      95 Apr 14 01:36 pilot_heartbeat.json
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas   12600 Apr 14 01:37 heartbeat.json
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas    4413 Apr 14 01:37 pilotlog.txt
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas 1401794 Apr 14 01:40 log.44075483._003919.job.log.1
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas     188 Apr 14 01:41 output.list
2025-04-13 21:41:00 (6184): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 14 01:41 runtime_log
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas 1525760 Apr 14 01:41 result.tar.gz
2025-04-13 21:41:00 (6184): Guest Log: -rw-r--r--. 1 atlas atlas   10681 Apr 14 01:41 runtime_log.err
2025-04-13 21:41:00 (6184): Guest Log: -rw-------. 1 atlas atlas     655 Apr 14 01:41 BmrKDmTb9N7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmPKzKDmWnBHdn.diag
2025-04-13 21:41:00 (6184): Guest Log: Looking for outputfile HITS.44075483._003919.pool.root.1
2025-04-13 21:41:00 (6184): Guest Log: No HITS file was produced
2025-04-13 21:41:00 (6184): Guest Log: Successfully finished the ATLAS job!
2025-04-13 21:41:00 (6184): Guest Log: Copying the results back to the shared directory!
2025-04-13 21:41:01 (6184): Guest Log:  *** Contents of shared directory: ***
2025-04-13 21:41:01 (6184): Guest Log: total 219224
2025-04-13 21:41:01 (6184): Guest Log: -rwxrwxrwx. 1 root root 222410343 Apr 13 21:34 ATLAS.root_0
2025-04-13 21:41:01 (6184): Guest Log: -rwxrwxrwx. 1 root root      8375 Apr 13 21:34 init_data.xml
2025-04-13 21:41:01 (6184): Guest Log: -rwxrwxrwx. 1 root root    508894 Apr 13 21:33 input.tar.gz
2025-04-13 21:41:01 (6184): Guest Log: -rwxrwxrwx. 1 root root   1525760 Apr 14 01:41 result.tar.gz
2025-04-13 21:41:01 (6184): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 13 21:33 start_atlas.sh
2025-04-13 21:41:01 (6184): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 21:41:01 (6184): VM Completion File Detected.
2025-04-13 21:41:01 (6184): Powering off VM.
2025-04-13 21:41:03 (6184): Successfully stopped VM.
2025-04-13 21:41:03 (6184): Deregistering VM. (boinc_beca81afc1bb674d, slot#0)
2025-04-13 21:41:03 (6184): Removing network bandwidth throttle group from VM.
2025-04-13 21:41:03 (6184): Removing VM from VirtualBox.
21:41:09 (6184): called boinc_finish(0)

</stderr_txt>
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