Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 08:39:54 (11984): Detected: vboxwrapper 26206
2025-04-13 08:39:54 (11984): Detected: BOINC client v7.20.2
2025-04-13 08:39:56 (11984): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-04-13 08:39:57 (11984): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 08:39:57 (11984): Create VM. (boinc_75c7f24681f07944, slot#3)
2025-04-13 08:39:58 (11984): Setting Memory Size for VM. (4400MB)
2025-04-13 08:39:58 (11984): Setting CPU Count for VM. (4)
2025-04-13 08:39:58 (11984): Setting Chipset Options for VM.
2025-04-13 08:39:59 (11984): Setting Graphics Controller Options for VM.
2025-04-13 08:39:59 (11984): Setting Boot Options for VM.
2025-04-13 08:40:00 (11984): Setting Network Configuration for NAT.
2025-04-13 08:40:00 (11984): Enabling VM Network Access.
2025-04-13 08:40:00 (11984): Disabling USB Support for VM.
2025-04-13 08:40:00 (11984): Disabling COM Port Support for VM.
2025-04-13 08:40:01 (11984): Disabling LPT Port Support for VM.
2025-04-13 08:40:01 (11984): Disabling Audio Support for VM.
2025-04-13 08:40:01 (11984): Disabling Clipboard Support for VM.
2025-04-13 08:40:01 (11984): Disabling Drag and Drop Support for VM.
2025-04-13 08:40:02 (11984): Adding storage controller(s) to VM.
2025-04-13 08:40:02 (11984): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 08:40:03 (11984): Adding VirtualBox Guest Additions to VM.
2025-04-13 08:40:04 (11984): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 08:40:04 (11984): forwarding host port 49497 to guest port 80
2025-04-13 08:40:04 (11984): Enabling remote desktop for VM.
2025-04-13 08:40:05 (11984): Required extension pack not installed, remote desktop not enabled.
2025-04-13 08:40:05 (11984): Enabling shared directory for VM.
2025-04-13 08:40:05 (11984): Starting VM using VBoxManage interface. (boinc_75c7f24681f07944, slot#3)
2025-04-13 08:40:12 (11984): Successfully started VM. (PID = '12840')
2025-04-13 08:40:12 (11984): Reporting VM Process ID to BOINC.
2025-04-13 08:40:12 (11984): Guest Log: BIOS: VirtualBox 6.1.34
2025-04-13 08:40:12 (11984): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 08:40:12 (11984): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 08:40:12 (11984): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 08:40:12 (11984): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 08:40:12 (11984): Detected: Web Application Enabled (http://localhost:49497)
2025-04-13 08:40:12 (11984): Preference change detected
2025-04-13 08:40:12 (11984): Setting CPU throttle for VM. (100%)
2025-04-13 08:40:12 (11984): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 08:40:14 (11984): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 08:40:14 (11984): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 08:40:17 (11984): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 08:40:17 (11984): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 08:40:17 (11984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 08:40:27 (11984): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 08:40:27 (11984): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 08:40:42 (11984): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.000281 main     Log opened 2025-04-13T08:40:41.782644000Z
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.000439 main     OS Product: Linux
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.000481 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.000518 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.000556 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.000557 main     Process ID: 1303
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.000558 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 08:40:42 (11984): Guest Log: 00:00:00.002449 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 08:40:43 (11984): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 08:40:43 (11984): Guest Log: [INFO] Mounting shared directory
2025-04-13 08:40:43 (11984): Guest Log: [INFO] Checking for init_data.xml
2025-04-13 08:40:48 (11984): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-13 08:40:48 (11984): Guest Log: [INFO] Detected branch: prod
2025-04-13 08:40:48 (11984): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-13 08:40:48 (11984): Guest Log: Copying input files
2025-04-13 08:40:52 (11984): Guest Log: Copied input files into RunAtlas.
2025-04-13 08:40:52 (11984): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-13 08:40:52 (11984): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-13 08:40:52 (11984): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-13 08:40:52 (11984): Guest Log: Further information can be found at the LHC@home message board.
2025-04-13 08:40:53 (11984): Guest Log: 00:00:10.011610 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 921 033 000ns (GuestNow=1 744 548 052 709 962 000 ns GuestLast=1 744 533 641 788 929 000 ns fSetTimeLastLoop=true )
2025-04-13 08:41:08 (11984): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-13 08:41:09 (11984): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-13 08:41:09 (11984): Guest Log: 2.6.3.0 1581 0 30156 144811 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-13 08:41:13 (11984): Guest Log: copied the webapp to /var/www
2025-04-13 08:41:13 (11984): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-13 08:41:13 (11984): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-13 08:41:13 (11984): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-13 08:41:13 (11984): Guest Log:  *** Starting ATLAS job. (PandaID=6600995926 taskID=44075164) ***
2025-04-13 08:41:24 (11984): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 08:41:34 (11984): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 10:25:44 (11984): Status Report: Elapsed Time: '6000.469019'
2025-04-13 10:25:44 (11984): Status Report: CPU Time: '20596.656250'
2025-04-13 12:12:12 (11984): Status Report: Elapsed Time: '12001.118628'
2025-04-13 12:12:12 (11984): Status Report: CPU Time: '45826.875000'
2025-04-13 13:27:03 (11984): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 13:27:13 (11984): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 13:30:47 (11984): Guest Log:  *** Job finished ***
2025-04-13 13:30:47 (11984): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:09,224 | INFO     | [data] queue_monitor thread has finished
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:15,508 | INFO     | job.realtimelogging is not enabled
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:16,509 | INFO     | [payload] run_realtimelog thread has finished
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:17,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140348347045696)>', '<ExcThread(monitor, started 140347753608960)>']
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:17,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:17,991 | INFO     | [monitor] control thread has ended
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,682 | INFO     | all workflow threads have been joined
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,682 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,683 | INFO     | traces error code: 0
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,938 [wrapper] ==== pilot stdout END ====
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,947 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,956 [wrapper] pilotpid: 5922
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:22,965 [wrapper] Pilot exit status: 0
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:23,095 [wrapper] pandaids: 6600995926
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:23,146 [wrapper] cleanup supervisor_pilot 19873 5923
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:23,155 [wrapper] Test setup, not cleaning
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:23,164 [wrapper] apfmon messages muted
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:23,173 [wrapper] ==== wrapper stdout END ====
2025-04-13 13:30:47 (11984): Guest Log: 2025-04-13 17:30:23,182 [wrapper] ==== wrapper stderr END ====
2025-04-13 13:30:47 (11984): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 13:30:47 (11984): Guest Log:     "exeErrorCode": 0,
2025-04-13 13:30:47 (11984): Guest Log:     "exeErrorDiag": "",
2025-04-13 13:30:47 (11984): Guest Log:     "pilotErrorCode": 0,
2025-04-13 13:30:47 (11984): Guest Log:     "pilotErrorDiag": "",
2025-04-13 13:30:47 (11984): Guest Log:  *** Listing of results directory ***
2025-04-13 13:30:47 (11984): Guest Log: total 199812
2025-04-13 13:30:47 (11984): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 13 09:13 pilot3.tar.gz
2025-04-13 13:30:47 (11984): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 13 09:30 runpilot2-wrapper.sh
2025-04-13 13:30:47 (11984): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 13 09:30 queuedata.json
2025-04-13 13:30:47 (11984): Guest Log: -rwxr-xr-x. 1 atlas atlas      8656 Apr 13 12:40 init_data.xml
2025-04-13 13:30:47 (11984): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 Apr 13 12:40 input.tar.gz
2025-04-13 13:30:47 (11984): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 13 12:40 start_atlas.sh
2025-04-13 13:30:47 (11984): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 13 12:40 EVNT.44075162._002172.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 13:30:47 (11984): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 13 12:41 pandaJob.out
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas       424 Apr 13 12:41 setup.sh.local
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas    985788 Apr 13 12:42 agis_schedconf.cvmfs.json
2025-04-13 13:30:47 (11984): Guest Log: drwx------. 4 atlas atlas      4096 Apr 13 12:42 pilot3
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas 197231964 Apr 13 17:29 HITS.44075164._055775.pool.root.1
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas      1038 Apr 13 17:29 memory_monitor_summary.json
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 17:29 agis_ddmendpoints.agis.ALL.json
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas    347248 Apr 13 17:29 log.44075164._055775.job.log.tgz.1
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 17:29 pilot_heartbeat.json
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas      7737 Apr 13 17:30 heartbeat.json
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas      4924 Apr 13 17:30 pilotlog.txt
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas   1453704 Apr 13 17:30 log.44075164._055775.job.log.1
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 17:30 output.list
2025-04-13 13:30:47 (11984): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 17:30 runtime_log
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas   1822720 Apr 13 17:30 result.tar.gz
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas       671 Apr 13 17:30 xgFLDmmq8N7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmKaTLDmxfoAAn.diag
2025-04-13 13:30:47 (11984): Guest Log: -rw-r--r--. 1 atlas atlas     10981 Apr 13 17:30 runtime_log.err
2025-04-13 13:30:47 (11984): Guest Log: Looking for outputfile HITS.44075164._055775.pool.root.1
2025-04-13 13:30:47 (11984): Guest Log: HITS file was successfully produced
2025-04-13 13:30:47 (11984): Guest Log: -rw-------. 1 atlas atlas 197231964 Apr 13 17:29 /home/atlas/RunAtlas/HITS.44075164._055775.pool.root.1
2025-04-13 13:30:50 (11984): Guest Log: Successfully finished the ATLAS job!
2025-04-13 13:30:50 (11984): Guest Log: Copying the results back to the shared directory!
2025-04-13 13:30:50 (11984): Guest Log:  *** Contents of shared directory: ***
2025-04-13 13:30:50 (11984): Guest Log: total 412104
2025-04-13 13:30:50 (11984): Guest Log: -rwxrwxrwx. 1 root root 222391312 Apr 13 12:39 ATLAS.root_0
2025-04-13 13:30:50 (11984): Guest Log: -rwxrwxrwx. 1 root root 197231964 Apr 13  2025 HITS.pool.root.1
2025-04-13 13:30:50 (11984): Guest Log: -rwxrwxrwx. 1 root root      8656 Apr 13 12:39 init_data.xml
2025-04-13 13:30:50 (11984): Guest Log: -rwxrwxrwx. 1 root root    508874 Apr 13 12:38 input.tar.gz
2025-04-13 13:30:50 (11984): Guest Log: -rwxrwxrwx. 1 root root   1822720 Apr 13  2025 result.tar.gz
2025-04-13 13:30:50 (11984): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 13 12:38 start_atlas.sh
2025-04-13 13:30:50 (11984): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 13:30:50 (11984): VM Completion File Detected.
2025-04-13 13:30:50 (11984): Powering off VM.
2025-04-13 13:30:52 (11984): Successfully stopped VM.
2025-04-13 13:30:52 (11984): Deregistering VM. (boinc_75c7f24681f07944, slot#3)
2025-04-13 13:30:52 (11984): Removing network bandwidth throttle group from VM.
2025-04-13 13:30:53 (11984): Removing VM from VirtualBox.
13:30:58 (11984): called boinc_finish(0)

</stderr_txt>
]]>

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