Stderr output

<core_client_version>8.2.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 06:27:08 (13684): Detected: vboxwrapper 26206
2025-04-13 06:27:08 (13684): Detected: BOINC client v8.2.0
2025-04-13 06:27:09 (13684): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-13 06:27:09 (13684): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 06:27:09 (13684): Create VM. (boinc_54e42d02acce70fa, slot#13)
2025-04-13 06:27:10 (13684): Setting Memory Size for VM. (4096MB)
2025-04-13 06:27:10 (13684): Setting CPU Count for VM. (1)
2025-04-13 06:27:10 (13684): Setting Chipset Options for VM.
2025-04-13 06:27:11 (13684): Setting Graphics Controller Options for VM.
2025-04-13 06:27:11 (13684): Setting Boot Options for VM.
2025-04-13 06:27:11 (13684): Setting Network Configuration for NAT.
2025-04-13 06:27:11 (13684): Enabling VM Network Access.
2025-04-13 06:27:12 (13684): Disabling USB Support for VM.
2025-04-13 06:27:12 (13684): Disabling COM Port Support for VM.
2025-04-13 06:27:12 (13684): Disabling LPT Port Support for VM.
2025-04-13 06:27:12 (13684): Disabling Audio Support for VM.
2025-04-13 06:27:13 (13684): Disabling Clipboard Support for VM.
2025-04-13 06:27:13 (13684): Disabling Drag and Drop Support for VM.
2025-04-13 06:27:13 (13684): Adding storage controller(s) to VM.
2025-04-13 06:27:13 (13684): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 06:27:14 (13684): Adding VirtualBox Guest Additions to VM.
2025-04-13 06:27:14 (13684): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 06:27:15 (13684): forwarding host port 51363 to guest port 80
2025-04-13 06:27:15 (13684): Enabling remote desktop for VM.
2025-04-13 06:27:15 (13684): Required extension pack not installed, remote desktop not enabled.
2025-04-13 06:27:15 (13684): Enabling shared directory for VM.
2025-04-13 06:27:16 (13684): Starting VM using VBoxManage interface. (boinc_54e42d02acce70fa, slot#13)
2025-04-13 06:27:22 (13684): Successfully started VM. (PID = '17532')
2025-04-13 06:27:22 (13684): Reporting VM Process ID to BOINC.
2025-04-13 06:27:22 (13684): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-13 06:27:22 (13684): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 06:27:22 (13684): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 06:27:22 (13684): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 06:27:22 (13684): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 06:27:22 (13684): Detected: Web Application Enabled (http://localhost:51363)
2025-04-13 06:27:22 (13684): Preference change detected
2025-04-13 06:27:22 (13684): Setting CPU throttle for VM. (100%)
2025-04-13 06:27:22 (13684): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 06:27:24 (13684): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 06:27:24 (13684): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 06:27:27 (13684): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 06:27:27 (13684): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 06:27:27 (13684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 06:27:34 (13684): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 06:27:34 (13684): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 06:27:49 (13684): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.000398 main     Log opened 2025-04-13T06:27:46.578514000Z
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.000788 main     OS Product: Linux
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.000913 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.001056 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.001223 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.001226 main     Process ID: 1256
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.001228 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 06:27:49 (13684): Guest Log: 00:00:00.004308 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 06:27:49 (13684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 06:27:49 (13684): Guest Log: [INFO] Mounting shared directory
2025-04-13 06:27:49 (13684): Guest Log: [INFO] Checking for init_data.xml
2025-04-13 06:27:52 (13684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-13 06:27:52 (13684): Guest Log: [INFO] Detected branch: prod
2025-04-13 06:27:53 (13684): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-13 06:27:53 (13684): Guest Log: Copying input files
2025-04-13 06:27:54 (13684): Guest Log: Copied input files into RunAtlas.
2025-04-13 06:27:54 (13684): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-13 06:27:59 (13684): Guest Log: 00:00:10.046745 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 917 017 000ns (GuestNow=1 744 518 478 707 375 000 ns GuestLast=1 744 525 666 624 392 000 ns fSetTimeLastLoop=true )
2025-04-13 06:28:04 (13684): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-13 06:28:04 (13684): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-13 06:28:04 (13684): Guest Log: 2.6.3.0 1525 0 29508 144799 4 1 3117322 4096000 0 65024 0 0 n/a 1 37 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-13 06:28:05 (13684): Guest Log: copied the webapp to /var/www
2025-04-13 06:28:05 (13684): Guest Log: core_number=1
2025-04-13 06:28:05 (13684): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-13 06:28:06 (13684): Guest Log:  *** Starting ATLAS job. (PandaID=6600568593 taskID=44075164) ***
2025-04-13 08:07:27 (13684): Status Report: Elapsed Time: '6000.000000'
2025-04-13 08:07:27 (13684): Status Report: CPU Time: '5245.234375'
2025-04-13 09:47:33 (13684): Status Report: Elapsed Time: '12000.000000'
2025-04-13 09:47:33 (13684): Status Report: CPU Time: '11225.156250'
2025-04-13 11:27:38 (13684): Status Report: Elapsed Time: '18000.000000'
2025-04-13 11:27:38 (13684): Status Report: CPU Time: '17206.234375'
2025-04-13 13:07:43 (13684): Status Report: Elapsed Time: '24000.000000'
2025-04-13 13:07:43 (13684): Status Report: CPU Time: '23185.796875'
2025-04-13 14:47:49 (13684): Status Report: Elapsed Time: '30000.000000'
2025-04-13 14:47:49 (13684): Status Report: CPU Time: '29165.343750'
2025-04-13 16:27:54 (13684): Status Report: Elapsed Time: '36000.000000'
2025-04-13 16:27:54 (13684): Status Report: CPU Time: '35144.921875'
2025-04-13 18:08:00 (13684): Status Report: Elapsed Time: '42000.000000'
2025-04-13 18:08:00 (13684): Status Report: CPU Time: '41124.765625'
2025-04-13 19:48:05 (13684): Status Report: Elapsed Time: '48000.000000'
2025-04-13 19:48:05 (13684): Status Report: CPU Time: '47102.343750'
2025-04-13 20:32:36 (13684): Guest Log:  *** Job finished ***
2025-04-13 20:32:36 (13684): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:23,869 | INFO     | [data] copytool_in thread has finished
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:24,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:28,223 | INFO     | [data] queue_monitor thread has finished
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:30,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140130398160704)>', '<ExcThread(monitor, started 140129742087936)>']
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:30,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:30,414 | INFO     | [monitor] control thread has ended
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,188 | INFO     | all workflow threads have been joined
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,188 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,189 | INFO     | traces error code: 0
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,336 [wrapper] ==== pilot stdout END ====
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,345 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,351 [wrapper] pilotpid: 5796
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,357 [wrapper] Pilot exit status: 0
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,394 [wrapper] pandaids: 6600568593
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,426 [wrapper] cleanup supervisor_pilot  7751 5797
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,430 [wrapper] Test setup, not cleaning
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,434 [wrapper] apfmon messages muted
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,438 [wrapper] ==== wrapper stdout END ====
2025-04-13 20:32:36 (13684): Guest Log: 2025-04-13 18:32:35,455 [wrapper] ==== wrapper stderr END ====
2025-04-13 20:32:36 (13684): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 20:32:36 (13684): Guest Log:     "exeErrorCode": 0,
2025-04-13 20:32:36 (13684): Guest Log:     "exeErrorDiag": "",
2025-04-13 20:32:36 (13684): Guest Log:     "pilotErrorCode": 0,
2025-04-13 20:32:36 (13684): Guest Log:     "pilotErrorDiag": "",
2025-04-13 20:32:36 (13684): Guest Log:  *** Listing of results directory ***
2025-04-13 20:32:36 (13684): Guest Log: total 200448
2025-04-13 20:32:36 (13684): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 12 21:04 pilot3.tar.gz
2025-04-13 20:32:36 (13684): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 12 21:19 queuedata.json
2025-04-13 20:32:36 (13684): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 12 21:19 runpilot2-wrapper.sh
2025-04-13 20:32:36 (13684): Guest Log: -rwxr-xr-x. 1 atlas atlas      9395 Apr 13 04:27 init_data.xml
2025-04-13 20:32:36 (13684): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 Apr 13 04:27 input.tar.gz
2025-04-13 20:32:36 (13684): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 13 04:27 start_atlas.sh
2025-04-13 20:32:36 (13684): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 13 04:27 EVNT.44075162._001913.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 20:32:36 (13684): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 13 04:28 pandaJob.out
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas       460 Apr 13 04:28 setup.sh.local
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas    985800 Apr 13 04:28 agis_schedconf.cvmfs.json
2025-04-13 20:32:36 (13684): Guest Log: drwx------. 4 atlas atlas      4096 Apr 13 04:28 pilot3
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas 191464009 Apr 13 18:31 HITS.44075164._049132.pool.root.1
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 18:31 pilot_heartbeat.json
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas      1021 Apr 13 18:32 memory_monitor_summary.json
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 18:32 agis_ddmendpoints.agis.ALL.json
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas    604961 Apr 13 18:32 log.44075164._049132.job.log.tgz.1
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas      7678 Apr 13 18:32 heartbeat.json
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 13 18:32 pilotlog.txt
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas   4403709 Apr 13 18:32 log.44075164._049132.job.log.1
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 18:32 output.list
2025-04-13 20:32:36 (13684): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 18:32 runtime_log
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas   5027840 Apr 13 18:32 result.tar.gz
2025-04-13 20:32:36 (13684): Guest Log: -rw-r--r--. 1 atlas atlas     11168 Apr 13 18:32 runtime_log.err
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas       656 Apr 13 18:32 q5qMDmhRxN7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmmkyKDm8Ztxnn.diag
2025-04-13 20:32:36 (13684): Guest Log: Looking for outputfile HITS.44075164._049132.pool.root.1
2025-04-13 20:32:36 (13684): Guest Log: HITS file was successfully produced
2025-04-13 20:32:36 (13684): Guest Log: -rw-------. 1 atlas atlas 191464009 Apr 13 18:31 /home/atlas/RunAtlas/HITS.44075164._049132.pool.root.1
2025-04-13 20:32:38 (13684): Guest Log: Successfully finished the ATLAS job!
2025-04-13 20:32:38 (13684): Guest Log: Copying the results back to the shared directory!
2025-04-13 20:32:38 (13684): Guest Log:  *** Contents of shared directory: ***
2025-04-13 20:32:38 (13684): Guest Log: total 408208
2025-04-13 20:32:38 (13684): Guest Log: -rwxrwxrwx. 1 root root 220962152 Apr 13 04:27 ATLAS.root_0
2025-04-13 20:32:38 (13684): Guest Log: -rwxrwxrwx. 1 root root 191464009 Apr 13 18:32 HITS.pool.root.1
2025-04-13 20:32:38 (13684): Guest Log: -rwxrwxrwx. 1 root root      9395 Apr 13 04:27 init_data.xml
2025-04-13 20:32:38 (13684): Guest Log: -rwxrwxrwx. 1 root root    508882 Apr 13 04:01 input.tar.gz
2025-04-13 20:32:38 (13684): Guest Log: -rwxrwxrwx. 1 root root   5027840 Apr 13 18:32 result.tar.gz
2025-04-13 20:32:38 (13684): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 13 04:01 start_atlas.sh
2025-04-13 20:32:38 (13684): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 20:32:38 (13684): VM Completion File Detected.
2025-04-13 20:32:38 (13684): Powering off VM.
2025-04-13 20:32:38 (13684): Successfully stopped VM.
2025-04-13 20:32:38 (13684): Deregistering VM. (boinc_54e42d02acce70fa, slot#13)
2025-04-13 20:32:39 (13684): Removing network bandwidth throttle group from VM.
2025-04-13 20:32:39 (13684): Removing VM from VirtualBox.
20:32:44 (13684): called boinc_finish(0)

</stderr_txt>
]]>

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