Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-12 16:14:00 (4136): Detected: vboxwrapper 26206
2025-04-12 16:14:00 (4136): Detected: BOINC client v7.24.1
2025-04-12 16:14:00 (4136): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-04-12 16:14:00 (4136): Successfully copied 'init_data.xml' to the shared directory.
2025-04-12 16:14:01 (4136): Create VM. (boinc_2eb98d5cba0c37d0, slot#3)
2025-04-12 16:14:01 (4136): Setting Memory Size for VM. (4800MB)
2025-04-12 16:14:02 (4136): Setting CPU Count for VM. (8)
2025-04-12 16:14:02 (4136): Setting Chipset Options for VM.
2025-04-12 16:14:02 (4136): Setting Graphics Controller Options for VM.
2025-04-12 16:14:02 (4136): Setting Boot Options for VM.
2025-04-12 16:14:03 (4136): Setting Network Configuration for NAT.
2025-04-12 16:14:03 (4136): Enabling VM Network Access.
2025-04-12 16:14:03 (4136): Disabling USB Support for VM.
2025-04-12 16:14:03 (4136): Disabling COM Port Support for VM.
2025-04-12 16:14:04 (4136): Disabling LPT Port Support for VM.
2025-04-12 16:14:04 (4136): Disabling Audio Support for VM.
2025-04-12 16:14:04 (4136): Disabling Clipboard Support for VM.
2025-04-12 16:14:04 (4136): Disabling Drag and Drop Support for VM.
2025-04-12 16:14:05 (4136): Adding storage controller(s) to VM.
2025-04-12 16:14:05 (4136): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-12 16:14:05 (4136): Adding VirtualBox Guest Additions to VM.
2025-04-12 16:14:06 (4136): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-12 16:14:06 (4136): forwarding host port 49170 to guest port 80
2025-04-12 16:14:06 (4136): Enabling remote desktop for VM.
2025-04-12 16:14:06 (4136): Required extension pack not installed, remote desktop not enabled.
2025-04-12 16:14:06 (4136): Enabling shared directory for VM.
2025-04-12 16:14:07 (4136): Starting VM using VBoxManage interface. (boinc_2eb98d5cba0c37d0, slot#3)
2025-04-12 16:14:11 (4136): Successfully started VM. (PID = '7016')
2025-04-12 16:14:11 (4136): Reporting VM Process ID to BOINC.
2025-04-12 16:14:11 (4136): Guest Log: BIOS: VirtualBox 6.0.14
2025-04-12 16:14:11 (4136): Guest Log: CPUID EDX: 0x178bfbff
2025-04-12 16:14:11 (4136): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-12 16:14:11 (4136): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-12 16:14:11 (4136): Detected: Web Application Enabled (http://localhost:49170)
2025-04-12 16:14:11 (4136): Preference change detected
2025-04-12 16:14:11 (4136): Setting CPU throttle for VM. (100%)
2025-04-12 16:14:12 (4136): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-12 16:14:13 (4136): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-12 16:14:13 (4136): Guest Log: BIOS: Booting from Hard Disk...
2025-04-12 16:14:16 (4136): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-12 16:14:16 (4136): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-12 16:14:16 (4136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-12 16:14:27 (4136): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-12 16:14:27 (4136): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-12 16:14:39 (4136): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.000221 main     Log opened 2025-04-12T16:14:37.271527000Z
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.000351 main     OS Product: Linux
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.000454 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.000530 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.000583 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.000585 main     Process ID: 1368
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.000586 main     Package type: LINUX_64BITS_GENERIC
2025-04-12 16:14:39 (4136): Guest Log: 00:00:00.002009 main     5.2.32 r132073 started. Verbose level = 0
2025-04-12 16:14:39 (4136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-12 16:14:39 (4136): Guest Log: [INFO] Mounting shared directory
2025-04-12 16:14:39 (4136): Guest Log: [INFO] Checking for init_data.xml
2025-04-12 16:14:43 (4136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-12 16:14:43 (4136): Guest Log: [INFO] Detected branch: prod
2025-04-12 16:14:43 (4136): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-12 16:14:43 (4136): Guest Log: Copying input files
2025-04-12 16:14:45 (4136): Guest Log: Copied input files into RunAtlas.
2025-04-12 16:14:46 (4136): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-12 16:14:46 (4136): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-12 16:14:46 (4136): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-12 16:14:46 (4136): Guest Log: Further information can be found at the LHC@home message board.
2025-04-12 16:14:49 (4136): Guest Log: 00:00:10.005912 timesync vgsvcTimeSyncWorker: Radical guest time change: 36 011 549 244 000ns (GuestNow=1 744 510 488 824 702 000 ns GuestLast=1 744 474 477 275 458 000 ns fSetTimeLastLoop=true )
2025-04-12 16:14:57 (4136): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-12 16:14:58 (4136): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-12 16:14:58 (4136): Guest Log: 2.6.3.0 1646 0 32056 144796 3 1 3117322 4096000 0 65024 1 0 n/a 1 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-12 16:14:59 (4136): Guest Log: copied the webapp to /var/www
2025-04-12 16:14:59 (4136): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-12 16:14:59 (4136): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-12 16:14:59 (4136): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-12 16:14:59 (4136): Guest Log:  *** Starting ATLAS job. (PandaID=6600442937 taskID=44075164) ***
2025-04-12 17:54:18 (4136): Status Report: Elapsed Time: '6000.000000'
2025-04-12 17:54:18 (4136): Status Report: CPU Time: '34896.453125'
2025-04-12 19:34:24 (4136): Status Report: Elapsed Time: '12000.000000'
2025-04-12 19:34:24 (4136): Status Report: CPU Time: '81321.140625'
2025-04-12 21:04:12 (4136): Guest Log:  *** Job finished ***
2025-04-12 21:04:12 (4136): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:00,071 | INFO     | [data] copytool_in thread has finished
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:00,105 | INFO     | [payload] validate_pre thread has finished
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:03,324 | INFO     | [data] queue_monitor thread has finished
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:05,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992689596224)>', '<ExcThread(monitor, started 139991439111936)>']
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:06,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:06,328 | INFO     | [monitor] control thread has ended
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,303 | INFO     | all workflow threads have been joined
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,303 | INFO     | end of generic workflow (traces error code: 0)
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,304 | INFO     | traces error code: 0
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,442 [wrapper] ==== pilot stdout END ====
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,451 [wrapper] ==== wrapper stdout RESUME ====
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,460 [wrapper] pilotpid: 6007
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,469 [wrapper] Pilot exit status: 0
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,575 [wrapper] pandaids: 6600442937
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,645 [wrapper] cleanup supervisor_pilot 20207 6008
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,657 [wrapper] Test setup, not cleaning
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,666 [wrapper] apfmon messages muted
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,675 [wrapper] ==== wrapper stdout END ====
2025-04-12 21:04:12 (4136): Guest Log: 2025-04-13 07:04:10,685 [wrapper] ==== wrapper stderr END ====
2025-04-12 21:04:12 (4136): Guest Log:  *** Error codes and diagnostics ***
2025-04-12 21:04:12 (4136): Guest Log:     "exeErrorCode": 0,
2025-04-12 21:04:12 (4136): Guest Log:     "exeErrorDiag": "",
2025-04-12 21:04:12 (4136): Guest Log:     "pilotErrorCode": 0,
2025-04-12 21:04:12 (4136): Guest Log:     "pilotErrorDiag": "",
2025-04-12 21:04:12 (4136): Guest Log:  *** Listing of results directory ***
2025-04-12 21:04:12 (4136): Guest Log: total 202720
2025-04-12 21:04:12 (4136): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 12 13:48 pilot3.tar.gz
2025-04-12 21:04:12 (4136): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 12 13:58 queuedata.json
2025-04-12 21:04:12 (4136): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 12 13:59 runpilot2-wrapper.sh
2025-04-12 21:04:12 (4136): Guest Log: -rwxr-xr-x. 1 atlas atlas      9072 Apr 13 02:14 init_data.xml
2025-04-12 21:04:12 (4136): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 Apr 13 02:14 input.tar.gz
2025-04-12 21:04:12 (4136): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 13 02:14 start_atlas.sh
2025-04-12 21:04:12 (4136): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 13 02:14 EVNT.44075162._001758.pool.root.1 -> /data/./ATLAS.root_0
2025-04-12 21:04:12 (4136): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 13 02:14 pandaJob.out
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas       424 Apr 13 02:15 setup.sh.local
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas    985792 Apr 13 02:16 agis_schedconf.cvmfs.json
2025-04-12 21:04:12 (4136): Guest Log: drwx------. 4 atlas atlas      4096 Apr 13 02:16 pilot3
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas 200220097 Apr 13 07:02 HITS.44075164._045261.pool.root.1
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 07:03 pilot_heartbeat.json
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas      1035 Apr 13 07:03 memory_monitor_summary.json
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 07:03 agis_ddmendpoints.agis.ALL.json
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas    422561 Apr 13 07:03 log.44075164._045261.job.log.tgz.1
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas      7742 Apr 13 07:03 heartbeat.json
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas      4599 Apr 13 07:04 pilotlog.txt
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas   1373502 Apr 13 07:04 log.44075164._045261.job.log.1
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 07:04 output.list
2025-04-12 21:04:12 (4136): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 07:04 runtime_log
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas   1812480 Apr 13 07:04 result.tar.gz
2025-04-12 21:04:12 (4136): Guest Log: -rw-r--r--. 1 atlas atlas     10975 Apr 13 07:04 runtime_log.err
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas       670 Apr 13 07:04 KWYKDmbZqN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmIdRLDmMOL84n.diag
2025-04-12 21:04:12 (4136): Guest Log: Looking for outputfile HITS.44075164._045261.pool.root.1
2025-04-12 21:04:12 (4136): Guest Log: HITS file was successfully produced
2025-04-12 21:04:12 (4136): Guest Log: -rw-------. 1 atlas atlas 200220097 Apr 13 07:02 /home/atlas/RunAtlas/HITS.44075164._045261.pool.root.1
2025-04-12 21:04:13 (4136): Guest Log: Successfully finished the ATLAS job!
2025-04-12 21:04:13 (4136): Guest Log: Copying the results back to the shared directory!
2025-04-12 21:04:13 (4136): Guest Log:  *** Contents of shared directory: ***
2025-04-12 21:04:13 (4136): Guest Log: total 414080
2025-04-12 21:04:13 (4136): Guest Log: -rwxrwxrwx. 1 root root 221434812 Apr 13 02:14 ATLAS.root_0
2025-04-12 21:04:13 (4136): Guest Log: -rwxrwxrwx. 1 root root 200220097 Apr 13 07:04 HITS.pool.root.1
2025-04-12 21:04:13 (4136): Guest Log: -rwxrwxrwx. 1 root root      9072 Apr 13 02:14 init_data.xml
2025-04-12 21:04:13 (4136): Guest Log: -rwxrwxrwx. 1 root root    508882 Apr 13 02:09 input.tar.gz
2025-04-12 21:04:13 (4136): Guest Log: -rwxrwxrwx. 1 root root   1812480 Apr 13 07:04 result.tar.gz
2025-04-12 21:04:13 (4136): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 13 02:09 start_atlas.sh
2025-04-12 21:04:13 (4136): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-12 21:04:13 (4136): VM Completion File Detected.
2025-04-12 21:04:13 (4136): Powering off VM.
2025-04-12 21:04:15 (4136): Successfully stopped VM.
2025-04-12 21:04:15 (4136): Deregistering VM. (boinc_2eb98d5cba0c37d0, slot#3)
2025-04-12 21:04:15 (4136): Removing network bandwidth throttle group from VM.
2025-04-12 21:04:15 (4136): Removing VM from VirtualBox.
21:04:21 (4136): called boinc_finish(0)

</stderr_txt>
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