Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:01:19 (23840): wrapper (7.7.26015): starting
19:01:19 (23840): wrapper: running run_atlas (--nthreads 10)
[2025-04-12 19:01:19] Arguments: --nthreads 10
[2025-04-12 19:01:19] Threads: 10
[2025-04-12 19:01:19] Checking for CVMFS
[2025-04-12 19:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-12 19:01:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-12 19:01:20] Running cvmfs_config stat atlas.cern.ch
[2025-04-12 19:01:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-12 19:01:21] 2.11.2.0 20863 18800 232792 144791 2 619 12052812 18432001 18698 130560 0 98131983 98.968 234534632 36924 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-12 19:01:21] CVMFS is ok
[2025-04-12 19:01:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-12 19:01:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-12 19:01:21] Further information can be found at the LHC@home message board.
[2025-04-12 19:01:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-12 19:01:21] Checking for apptainer binary...
[2025-04-12 19:01:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-12 19:01:21] Running /usr/bin/apptainer --version
[2025-04-12 19:01:21] apptainer version 1.3.2-1.el7
[2025-04-12 19:01:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-12 19:01:44] c-210-1.aglt2.org
[2025-04-12 19:01:44] apptainer works
[2025-04-12 19:01:45] Set ATHENA_PROC_NUMBER=10
[2025-04-12 19:01:45] Set ATHENA_CORE_NUMBER=10
[2025-04-12 19:01:45] Starting ATLAS job with PandaID=6600505210
[2025-04-12 19:01:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:30:17 (1801): wrapper (7.7.26015): starting
11:30:17 (1801): wrapper: running run_atlas (--nthreads 10)
[2025-04-13 11:30:17] Arguments: --nthreads 10
[2025-04-13 11:30:17] Threads: 10
[2025-04-13 11:30:17] This job has been restarted, cleaning up previous attempt
[2025-04-13 11:30:18] Checking for CVMFS
[2025-04-13 11:30:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-13 11:30:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-13 11:30:20] Running cvmfs_config stat atlas.cern.ch
[2025-04-13 11:30:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-13 11:30:22] 2.11.2.0 20863 19789 226880 144816 2 433 17588327 18432000 14034 130560 0 101590218 98.957 245151785 36829 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-13 11:30:22] CVMFS is ok
[2025-04-13 11:30:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-13 11:30:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-13 11:30:22] Further information can be found at the LHC@home message board.
[2025-04-13 11:30:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-13 11:30:22] Checking for apptainer binary...
[2025-04-13 11:30:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-13 11:30:22] Running /usr/bin/apptainer --version
[2025-04-13 11:30:22] apptainer version 1.3.2-1.el7
[2025-04-13 11:30:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-13 11:30:39] c-210-1.aglt2.org
[2025-04-13 11:30:39] apptainer works
[2025-04-13 11:30:39] Set ATHENA_PROC_NUMBER=10
[2025-04-13 11:30:39] Set ATHENA_CORE_NUMBER=10
[2025-04-13 11:30:39] Starting ATLAS job with PandaID=6600505210
[2025-04-13 11:30:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-14 05:12:09]  *** The last 200 lines of the pilot log: ***
[2025-04-14 05:12:09] 2025-04-14 09:11:49,340 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-14 05:12:09] 2025-04-14 09:11:49,341 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6600505210/memory_monitor_summary.json (trf name=prmon)
[2025-04-14 05:12:09] 2025-04-14 09:11:49,341 | INFO     | extracted standard info from prmon json
[2025-04-14 05:12:09] 2025-04-14 09:11:49,341 | INFO     | extracted standard memory fields from prmon json
[2025-04-14 05:12:09] 2025-04-14 09:11:49,342 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-14 05:12:09] 2025-04-14 09:11:49,342 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-14 05:12:09] 2025-04-14 09:11:49,342 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-14 05:12:09] 2025-04-14 09:11:49,383 | INFO     | fitting pss+swap vs Time
[2025-04-14 05:12:09] 2025-04-14 09:11:49,386 | INFO     | sum of square deviations: 345794857525.1971
[2025-04-14 05:12:09] 2025-04-14 09:11:49,440 | INFO     | sum of deviations: 982932045393.2615
[2025-04-14 05:12:09] 2025-04-14 09:11:49,441 | INFO     | mean x: 1744590152.1272902
[2025-04-14 05:12:09] 2025-04-14 09:11:49,441 | INFO     | mean y: 2539545.679845709
[2025-04-14 05:12:09] 2025-04-14 09:11:49,441 | INFO     | -- intersect: -4956509235.080189
[2025-04-14 05:12:09] 2025-04-14 09:11:49,441 | INFO     | intersect: -4956509235.080189
[2025-04-14 05:12:09] 2025-04-14 09:11:49,446 | INFO     | chi2: 11.818214682515936
[2025-04-14 05:12:09] 2025-04-14 09:11:49,599 | INFO     | sum of square deviations: 340817420268.077
[2025-04-14 05:12:09] 2025-04-14 09:11:49,906 | INFO     | sum of deviations: 1342058141123.4456
[2025-04-14 05:12:09] 2025-04-14 09:11:49,906 | INFO     | mean x: 1744589999.631783
[2025-04-14 05:12:09] 2025-04-14 09:11:49,906 | INFO     | mean y: 2550548.882751938
[2025-04-14 05:12:09] 2025-04-14 09:11:49,906 | INFO     | -- intersect: -6867230960.77938
[2025-04-14 05:12:09] 2025-04-14 09:11:49,907 | INFO     | intersect: -6867230960.77938
[2025-04-14 05:12:09] 2025-04-14 09:11:49,922 | INFO     | chi2: 7.8176287965231825
[2025-04-14 05:12:09] 2025-04-14 09:11:49,933 | INFO     | current chi2=7.8176287965231825 (change=33.85101720914994 %)
[2025-04-14 05:12:09] 2025-04-14 09:11:49,948 | INFO     | sum of square deviations: 335887668911.2544
[2025-04-14 05:12:09] 2025-04-14 09:11:50,012 | INFO     | sum of deviations: 1335023765823.8003
[2025-04-14 05:12:09] 2025-04-14 09:11:50,012 | INFO     | mean x: 1744589847.131451
[2025-04-14 05:12:09] 2025-04-14 09:11:50,013 | INFO     | mean y: 2550331.275559883
[2025-04-14 05:12:09] 2025-04-14 09:11:50,013 | INFO     | -- intersect: -6931520559.402972
[2025-04-14 05:12:09] 2025-04-14 09:11:50,013 | INFO     | intersect: -6931520559.402972
[2025-04-14 05:12:09] 2025-04-14 09:11:50,014 | INFO     | chi2: 7.816840534852174
[2025-04-14 05:12:09] 2025-04-14 09:11:50,015 | INFO     | current chi2=7.816840534852174 (change=0.01008312995570984 %)
[2025-04-14 05:12:09] 2025-04-14 09:11:50,015 | INFO     | right removable region: 1026
[2025-04-14 05:12:09] 2025-04-14 09:11:50,016 | INFO     | sum of square deviations: 340816770433.81274
[2025-04-14 05:12:09] 2025-04-14 09:11:50,045 | INFO     | sum of deviations: 658450063478.5363
[2025-04-14 05:12:09] 2025-04-14 09:11:50,045 | INFO     | mean x: 1744590304.632752
[2025-04-14 05:12:09] 2025-04-14 09:11:50,045 | INFO     | mean y: 2549482.1676356588
[2025-04-14 05:12:09] 2025-04-14 09:11:50,046 | INFO     | -- intersect: -3367958358.0636573
[2025-04-14 05:12:09] 2025-04-14 09:11:50,046 | INFO     | intersect: -3367958358.0636573
[2025-04-14 05:12:09] 2025-04-14 09:11:50,047 | INFO     | chi2: 8.406912284782022
[2025-04-14 05:12:09] 2025-04-14 09:11:50,047 | INFO     | current chi2=8.406912284782022 (change=28.864786174350442 %)
[2025-04-14 05:12:09] 2025-04-14 09:11:50,049 | INFO     | sum of square deviations: 335886684242.36646
[2025-04-14 05:12:09] 2025-04-14 09:11:50,145 | INFO     | sum of deviations: 414993298161.0899
[2025-04-14 05:12:09] 2025-04-14 09:11:50,149 | INFO     | mean x: 1744590457.1382668
[2025-04-14 05:12:09] 2025-04-14 09:11:50,150 | INFO     | mean y: 2557012.140214216
[2025-04-14 05:12:09] 2025-04-14 09:11:50,150 | INFO     | -- intersect: -2152912024.6310067
[2025-04-14 05:12:09] 2025-04-14 09:11:50,150 | INFO     | intersect: -2152912024.6310067
[2025-04-14 05:12:09] 2025-04-14 09:11:50,170 | INFO     | chi2: 6.577645094295385
[2025-04-14 05:12:09] 2025-04-14 09:11:50,170 | INFO     | current chi2=6.577645094295385 (change=21.759085006726306 %)
[2025-04-14 05:12:09] 2025-04-14 09:11:50,172 | INFO     | left removable region: 20
[2025-04-14 05:12:09] 2025-04-14 09:11:50,174 | INFO     | sum of square deviations: 315700317569.6203
[2025-04-14 05:12:09] 2025-04-14 09:11:50,200 | INFO     | sum of deviations: 393606923012.61957
[2025-04-14 05:12:09] 2025-04-14 09:11:50,200 | INFO     | mean x: 1744590426.6540756
[2025-04-14 05:12:09] 2025-04-14 09:11:50,201 | INFO     | mean y: 2580052.8121272367
[2025-04-14 05:12:09] 2025-04-14 09:11:50,201 | INFO     | -- intersect: -2172529795.1567526
[2025-04-14 05:12:09] 2025-04-14 09:11:50,201 | INFO     | intersect: -2172529795.1567526
[2025-04-14 05:12:09] 2025-04-14 09:11:50,202 | INFO     | chi2: 0.17740051348559743
[2025-04-14 05:12:09] 2025-04-14 09:11:50,203 | INFO     | -- intersect: -2172529795.1567526
[2025-04-14 05:12:09] 2025-04-14 09:11:50,203 | INFO     | current memory leak: 1.25 B/s (using 1006 data points, chi2=0.18)
[2025-04-14 05:12:09] 2025-04-14 09:11:50,204 | INFO     | ..............................
[2025-04-14 05:12:09] 2025-04-14 09:11:50,204 | INFO     | . Timing measurements:
[2025-04-14 05:12:09] 2025-04-14 09:11:50,204 | INFO     | . get job = 0 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,205 | INFO     | . initial setup = 8 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,205 | INFO     | . payload setup = 54 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,205 | INFO     | . stage-in = 0 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,205 | INFO     | . payload execution = 63291 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,205 | INFO     | . stage-out = 14 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,205 | INFO     | . log creation = 7 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,205 | INFO     | ..............................
[2025-04-14 05:12:09] 2025-04-14 09:11:50,364 | INFO     | 
[2025-04-14 05:12:09] 2025-04-14 09:11:50,365 | INFO     | job summary report
[2025-04-14 05:12:09] 2025-04-14 09:11:50,365 | INFO     | --------------------------------------------------
[2025-04-14 05:12:09] 2025-04-14 09:11:50,365 | INFO     | PanDA job id: 6600505210
[2025-04-14 05:12:09] 2025-04-14 09:11:50,365 | INFO     | task id: 44075164
[2025-04-14 05:12:09] 2025-04-14 09:11:50,365 | INFO     | errors: (none)
[2025-04-14 05:12:09] 2025-04-14 09:11:50,365 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | pilot state: finished 
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | transexitcode: 0
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | exeerrorcode: 0
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | exeerrordiag: 
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | exitcode: 0
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | exitmsg: OK
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | cpuconsumptiontime: 58587 s
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | nevents: 400
[2025-04-14 05:12:09] 2025-04-14 09:11:50,366 | INFO     | neventsw: 0
[2025-04-14 05:12:09] 2025-04-14 09:11:50,367 | INFO     | pid: 30125
[2025-04-14 05:12:09] 2025-04-14 09:11:50,367 | INFO     | pgrp: 30125
[2025-04-14 05:12:09] 2025-04-14 09:11:50,367 | INFO     | corecount: 10
[2025-04-14 05:12:09] 2025-04-14 09:11:50,367 | INFO     | event service: False
[2025-04-14 05:12:09] 2025-04-14 09:11:50,367 | INFO     | sizes: {0: 2417156, 1: 2417184, 2: 2417355, 13: 2417383, 24: 2417439, 35: 2417467, 40: 2417829, 46: 2417857, 63350: 2467521, 63352: 2467520, 63367: 2476517, 63374:
[2025-04-14 05:12:09] 2025-04-14 09:11:50,370 | INFO     | --------------------------------------------------
[2025-04-14 05:12:09] 2025-04-14 09:11:50,370 | INFO     | 
[2025-04-14 05:12:09] 2025-04-14 09:11:50,371 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-14 05:12:09] 2025-04-14 09:11:50,829 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,829 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,829 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,829 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,830 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,830 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-14 05:12:09] 2025-04-14 09:11:50,839 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,839 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-14 05:12:09] 2025-04-14 09:11:50,839 | INFO     | job 6600505210 has completed (purged errors)
[2025-04-14 05:12:09] 2025-04-14 09:11:50,839 | INFO     | overall cleanup function is called
[2025-04-14 05:12:09] 2025-04-14 09:11:51,866 | INFO     | --- collectZombieJob: --- 10, [30125]
[2025-04-14 05:12:09] 2025-04-14 09:11:51,866 | INFO     | zombie collector waiting for pid 30125
[2025-04-14 05:12:09] 2025-04-14 09:11:51,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-14 05:12:09] 2025-04-14 09:11:51,871 | INFO     | collected zombie processes
[2025-04-14 05:12:09] 2025-04-14 09:11:51,871 | INFO     | will attempt to kill all subprocesses of pid=30125
[2025-04-14 05:12:09] 2025-04-14 09:11:53,105 | INFO     | process IDs to be killed: [30125] (in reverse order)
[2025-04-14 05:12:09] 2025-04-14 09:11:53,899 | WARNING  | found no corresponding commands to process id(s)
[2025-04-14 05:12:09] 2025-04-14 09:11:53,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-14 05:12:09] 2025-04-14 09:11:53,915 | INFO     | did not find any defunct processes belonging to 30125
[2025-04-14 05:12:09] 2025-04-14 09:11:53,932 | INFO     | did not find any defunct processes belonging to 30125
[2025-04-14 05:12:09] 2025-04-14 09:11:53,932 | INFO     | ready for new job
[2025-04-14 05:12:09] 2025-04-14 09:11:53,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-14 05:12:09] 2025-04-14 09:11:53,938 | INFO     | **************************************
[2025-04-14 05:12:09] 2025-04-14 09:11:53,938 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-14 05:12:09] 2025-04-14 09:11:53,938 | INFO     | **************************************
[2025-04-14 05:12:09] 2025-04-14 09:11:53,938 | INFO     | 
[2025-04-14 05:12:09] 2025-04-14 09:11:53,941 | INFO     | architecture information:
[2025-04-14 05:12:09] 2025-04-14 09:11:53,943 | INFO     | executing command: cat /etc/os-release
[2025-04-14 05:12:09] 2025-04-14 09:11:54,118 | INFO     | cat /etc/os-release:
[2025-04-14 05:12:09] NAME="CentOS Linux"
[2025-04-14 05:12:09] VERSION="7 (Core)"
[2025-04-14 05:12:09] ID="centos"
[2025-04-14 05:12:09] ID_LIKE="rhel fedora"
[2025-04-14 05:12:09] VERSION_ID="7"
[2025-04-14 05:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-14 05:12:09] ANSI_COLOR="0;31"
[2025-04-14 05:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-14 05:12:09] HOME_URL="https://www.centos.org/"
[2025-04-14 05:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-14 05:12:09] 
[2025-04-14 05:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-14 05:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-14 05:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-14 05:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-14 05:12:09] 
[2025-04-14 05:12:09] 2025-04-14 09:11:54,118 | INFO     | **************************************
[2025-04-14 05:12:09] 2025-04-14 09:11:54,621 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-14 05:12:09] 2025-04-14 09:11:54,801 | INFO     | sufficient remaining disk space (56946065408 B)
[2025-04-14 05:12:09] 2025-04-14 09:11:54,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-14 05:12:09] 2025-04-14 09:11:54,802 | INFO     | current server update state: UPDATING_FINAL
[2025-04-14 05:12:09] 2025-04-14 09:11:54,806 | INFO     | update_server=False
[2025-04-14 05:12:09] 2025-04-14 09:11:54,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-14 05:12:09] 2025-04-14 09:11:54,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-14 05:12:09] 2025-04-14 09:11:55,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-14 05:12:09] 2025-04-14 09:11:55,062 | INFO     | aborting loop
[2025-04-14 05:12:09] 2025-04-14 09:11:55,352 | INFO     | found 0 job(s) in 20 queues
[2025-04-14 05:12:09] 2025-04-14 09:11:55,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-14 05:12:09] 2025-04-14 09:11:55,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-14 05:12:09] 2025-04-14 09:11:55,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-14 05:12:09] 2025-04-14 09:11:55,535 | INFO     | all job control threads have been joined
[2025-04-14 05:12:09] 2025-04-14 09:11:55,812 | INFO     | [job] retrieve thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:55,822 | INFO     | [payload] validate_post thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:55,876 | INFO     | all data control threads have been joined
[2025-04-14 05:12:09] 2025-04-14 09:11:56,065 | INFO     | [payload] failed_post thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,067 | INFO     | [job] job monitor thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-14 05:12:09] 2025-04-14 09:11:56,213 | INFO     | all payload control threads have been joined
[2025-04-14 05:12:09] 2025-04-14 09:11:56,400 | INFO     | [job] queue monitor thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,541 | INFO     | [job] control thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,700 | INFO     | [job] validate thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,813 | INFO     | [data] copytool_out thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,882 | INFO     | [data] control thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,940 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,980 | INFO     | [payload] execute_payloads thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,989 | INFO     | [payload] validate_pre thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:56,998 | INFO     | [job] create_data_payload thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:57,006 | INFO     | [data] copytool_in thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:11:57,219 | INFO     | [payload] control thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:12:00,216 | INFO     | [data] queue_monitor thread has finished
[2025-04-14 05:12:09] 2025-04-14 09:12:00,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049893861184)>', '<ExcThread(monitor, started 140049605711616)>']
[2025-04-14 05:12:09] 2025-04-14 09:12:01,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-14 05:12:09] 2025-04-14 09:12:01,388 | INFO     | [monitor] control thread has ended
[2025-04-14 05:12:09] 2025-04-14 09:12:05,511 | INFO     | all workflow threads have been joined
[2025-04-14 05:12:09] 2025-04-14 09:12:05,512 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-14 05:12:09] 2025-04-14 09:12:05,512 | INFO     | traces error code: 0
[2025-04-14 05:12:09] 2025-04-14 09:12:05,512 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-14 05:12:09] 2025-04-14 09:12:06,053 [wrapper] ==== pilot stdout END ====
[2025-04-14 05:12:09] 2025-04-14 09:12:06,136 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-14 05:12:09] 2025-04-14 09:12:06,182 [wrapper] pilotpid: 18542
[2025-04-14 05:12:09] 2025-04-14 09:12:06,209 [wrapper] Pilot exit status: 0
[2025-04-14 05:12:09] 2025-04-14 09:12:06,485 [wrapper] pandaids: 6600505210 6600505210
[2025-04-14 05:12:09] 2025-04-14 09:12:07,131 [wrapper] cleanup supervisor_pilot  9217 18543
[2025-04-14 05:12:09] 2025-04-14 09:12:07,158 [wrapper] Test setup, not cleaning
[2025-04-14 05:12:09] 2025-04-14 09:12:07,210 [wrapper] apfmon messages muted
[2025-04-14 05:12:09] 2025-04-14 09:12:07,263 [wrapper] ==== wrapper stdout END ====
[2025-04-14 05:12:09] 2025-04-14 09:12:07,322 [wrapper] ==== wrapper stderr END ====
[2025-04-14 05:12:09]  *** Error codes and diagnostics ***
[2025-04-14 05:12:09]     "exeErrorCode": 0,
[2025-04-14 05:12:09]     "exeErrorDiag": "",
[2025-04-14 05:12:09]     "pilotErrorCode": 0,
[2025-04-14 05:12:09]     "pilotErrorDiag": "",
[2025-04-14 05:12:09]  *** Listing of results directory ***
[2025-04-14 05:12:09] total 637680
[2025-04-14 05:12:09] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas    495897 Apr 12 15:19 pilot3.tar.gz
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas      5111 Apr 12 15:34 queuedata.json
[2025-04-14 05:12:09] -rwx------ 1 boincer umatlas     37140 Apr 12 15:34 runpilot2-wrapper.sh
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas       100 Apr 12 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-14 05:12:09] -rwxr-xr-x 1 boincer umatlas      7986 Apr 12 19:01 run_atlas
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas       105 Apr 12 19:01 job.xml
[2025-04-14 05:12:09] -rw-r--r-- 3 boincer umatlas 222729067 Apr 12 19:01 EVNT.44075162._001874.pool.root.1
[2025-04-14 05:12:09] -rw-r--r-- 3 boincer umatlas 222729067 Apr 12 19:01 ATLAS.root_0
[2025-04-14 05:12:09] -rw-r--r-- 2 boincer umatlas     17569 Apr 12 19:01 start_atlas.sh
[2025-04-14 05:12:09] drwxrwx--x 2 boincer umatlas      4096 Apr 12 19:01 shared
[2025-04-14 05:12:09] -rw-r--r-- 2 boincer umatlas    508883 Apr 12 19:01 input.tar.gz
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas         0 Apr 12 19:01 boinc_lockfile
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas      2550 Apr 13 11:30 pandaJob.out
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas       467 Apr 13 11:30 setup.sh.local
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas    985764 Apr 13 11:32 agis_schedconf.cvmfs.json
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas 193727571 Apr 14 05:04 HITS.44075164._048163.pool.root.1
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas       533 Apr 14 05:04 boinc_task_state.xml
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas      1058 Apr 14 05:09 memory_monitor_summary.json
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas   1603529 Apr 14 05:10 agis_ddmendpoints.agis.ALL.json
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas    800456 Apr 14 05:10 log.44075164._048163.job.log.tgz.1
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas      6229 Apr 14 05:10 init_data.xml
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas        96 Apr 14 05:11 pilot_heartbeat.json
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas      7761 Apr 14 05:11 heartbeat.json
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas        30 Apr 14 05:12 wrapper_checkpoint.txt
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas      8192 Apr 14 05:12 boinc_mmap_file
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas      4353 Apr 14 05:12 pilotlog.txt
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas   4174667 Apr 14 05:12 log.44075164._048163.job.log.1
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas       357 Apr 14 05:12 output.list
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas       620 Apr 14 05:12 runtime_log
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas   4997120 Apr 14 05:12 result.tar.gz
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas       788 Apr 14 05:12 zE7KDmwnvN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm4ASLDmI8iJYo.diag
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas     11501 Apr 14 05:12 runtime_log.err
[2025-04-14 05:12:09] -rw-r--r-- 1 boincer umatlas     22839 Apr 14 05:12 stderr.txt
[2025-04-14 05:12:09] HITS file was successfully produced:
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas 193727571 Apr 14 05:04 shared/HITS.pool.root.1
[2025-04-14 05:12:09]  *** Contents of shared directory: ***
[2025-04-14 05:12:09] total 412104
[2025-04-14 05:12:09] -rw-r--r-- 3 boincer umatlas 222729067 Apr 12 19:01 ATLAS.root_0
[2025-04-14 05:12:09] -rw-r--r-- 2 boincer umatlas     17569 Apr 12 19:01 start_atlas.sh
[2025-04-14 05:12:09] -rw-r--r-- 2 boincer umatlas    508883 Apr 12 19:01 input.tar.gz
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas 193727571 Apr 14 05:04 HITS.pool.root.1
[2025-04-14 05:12:09] -rw------- 1 boincer umatlas   4997120 Apr 14 05:12 result.tar.gz
05:12:11 (1801): run_atlas exited; CPU time 60860.409560
05:12:11 (1801): called boinc_finish(0)

</stderr_txt>
]]>

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