Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 07:31:33 (6548): Detected: vboxwrapper 26206
2025-04-13 07:31:33 (6548): Detected: BOINC client v8.0.2
2025-04-13 07:31:34 (6548): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-13 07:31:34 (6548): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 07:31:35 (6548): Create VM. (boinc_708f5ae1820c6838, slot#16)
2025-04-13 07:31:35 (6548): Setting Memory Size for VM. (4800MB)
2025-04-13 07:31:36 (6548): Setting CPU Count for VM. (8)
2025-04-13 07:31:36 (6548): Setting Chipset Options for VM.
2025-04-13 07:31:36 (6548): Setting Graphics Controller Options for VM.
2025-04-13 07:31:36 (6548): Setting Boot Options for VM.
2025-04-13 07:31:37 (6548): Setting Network Configuration for NAT.
2025-04-13 07:31:37 (6548): Enabling VM Network Access.
2025-04-13 07:31:37 (6548): Disabling USB Support for VM.
2025-04-13 07:31:38 (6548): Disabling COM Port Support for VM.
2025-04-13 07:31:38 (6548): Disabling LPT Port Support for VM.
2025-04-13 07:31:38 (6548): Disabling Audio Support for VM.
2025-04-13 07:31:38 (6548): Disabling Clipboard Support for VM.
2025-04-13 07:31:39 (6548): Disabling Drag and Drop Support for VM.
2025-04-13 07:31:39 (6548): Adding storage controller(s) to VM.
2025-04-13 07:31:39 (6548): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 07:31:42 (6548): Adding VirtualBox Guest Additions to VM.
2025-04-13 07:31:42 (6548): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 07:31:43 (6548): forwarding host port 54692 to guest port 80
2025-04-13 07:31:43 (6548): Enabling remote desktop for VM.
2025-04-13 07:31:43 (6548): Required extension pack not installed, remote desktop not enabled.
2025-04-13 07:31:43 (6548): Enabling shared directory for VM.
2025-04-13 07:31:44 (6548): Starting VM using VBoxManage interface. (boinc_708f5ae1820c6838, slot#16)
2025-04-13 07:31:51 (6548): Successfully started VM. (PID = '5520')
2025-04-13 07:31:51 (6548): Reporting VM Process ID to BOINC.
2025-04-13 07:31:51 (6548): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-13 07:31:51 (6548): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 07:31:51 (6548): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 07:31:51 (6548): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 07:31:51 (6548): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 07:31:51 (6548): Detected: Web Application Enabled (http://localhost:54692)
2025-04-13 07:31:51 (6548): Preference change detected
2025-04-13 07:31:51 (6548): Setting CPU throttle for VM. (40%)
2025-04-13 07:31:52 (6548): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 07:31:53 (6548): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 07:31:53 (6548): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 07:31:57 (6548): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 07:31:57 (6548): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 07:31:57 (6548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 07:32:07 (6548): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 07:32:07 (6548): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 07:32:20 (6548): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.000198 main     Log opened 2025-04-13T07:32:19.263828000Z
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.000315 main     OS Product: Linux
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.000351 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.000378 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.000404 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.000405 main     Process ID: 1366
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.000406 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 07:32:20 (6548): Guest Log: 00:00:00.001171 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 07:32:20 (6548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 07:32:20 (6548): Guest Log: [INFO] Mounting shared directory
2025-04-13 07:32:21 (6548): Guest Log: [INFO] Checking for init_data.xml
2025-04-13 07:32:29 (6548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-13 07:32:29 (6548): Guest Log: [INFO] Detected branch: prod
2025-04-13 07:32:29 (6548): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-13 07:32:29 (6548): Guest Log: Copying input files
2025-04-13 07:32:30 (6548): Guest Log: 00:00:10.007930 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 683 517 000ns (GuestNow=1 744 493 550 586 491 000 ns GuestLast=1 744 529 539 270 008 000 ns fSetTimeLastLoop=true )
2025-04-13 07:32:32 (6548): Guest Log: Copied input files into RunAtlas.
2025-04-13 07:32:32 (6548): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-13 07:32:32 (6548): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-13 07:32:32 (6548): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-13 07:32:32 (6548): Guest Log: Further information can be found at the LHC@home message board.
2025-04-13 07:32:46 (6548): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-13 07:32:46 (6548): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-13 07:32:46 (6548): Guest Log: 2.6.3.0 1644 0 32056 144788 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-13 07:32:47 (6548): Guest Log: copied the webapp to /var/www
2025-04-13 07:32:47 (6548): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-13 07:32:47 (6548): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-13 07:32:49 (6548): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-13 07:32:49 (6548): Guest Log:  *** Starting ATLAS job. (PandaID=6600502579 taskID=44075164) ***
2025-04-13 09:11:54 (6548): Status Report: Elapsed Time: '6000.000000'
2025-04-13 09:11:54 (6548): Status Report: CPU Time: '11109.375000'
2025-04-13 09:31:58 (6548): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 10:07:39 (6548): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 10:07:46 (6548): Guest Log: 01:59:45.241507 timesync vgsvcTimeSyncWorker: Radical host time change: 2 150 366 000 000ns (HostNow=1 744 502 866 228 000 000 ns HostLast=1 744 500 715 862 000 000 ns)
2025-04-13 10:07:56 (6548): Guest Log: 01:59:55.297814 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 150 508 124 000ns (GuestNow=1 744 502 876 305 848 000 ns GuestLast=1 744 500 725 797 724 000 ns fSetTimeLastLoop=true )
2025-04-13 11:27:40 (6548): Status Report: Elapsed Time: '12000.000000'
2025-04-13 11:27:40 (6548): Status Report: CPU Time: '32749.984375'
2025-04-13 12:08:03 (6548): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 12:20:12 (6548): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 13:19:52 (6548): Status Report: Elapsed Time: '18000.000000'
2025-04-13 13:19:52 (6548): Status Report: CPU Time: '54340.484375'
2025-04-13 14:20:42 (6548): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 17:23:21 (6548): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 17:23:23 (6548): Guest Log: 06:00:37.696791 timesync vgsvcTimeSyncWorker: Radical host time change: 10 972 485 000 000ns (HostNow=1 744 528 973 066 000 000 ns HostLast=1 744 518 000 581 000 000 ns)
2025-04-13 17:23:33 (6548): Guest Log: 06:00:47.697502 timesync vgsvcTimeSyncWorker: Radical guest time change: 11 664 362 598 000ns (GuestNow=1 744 528 983 067 061 000 ns GuestLast=1 744 517 318 704 463 000 ns fSetTimeLastLoop=true )
2025-04-13 17:37:20 (6548): Guest Log:  *** Job finished ***
2025-04-13 17:37:20 (6548): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:38,277 | INFO     | [data] copytool_in thread has finished
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:38,353 | INFO     | [payload] failed_post thread has finished
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:41,903 | INFO     | [data] queue_monitor thread has finished
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:43,272 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140300417025856)>', '<ExcThread(monitor, started 140299460404992)>']
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:43,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:43,675 | INFO     | [monitor] control thread has ended
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,278 | INFO     | all workflow threads have been joined
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,278 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,278 | INFO     | traces error code: 0
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,278 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,460 [wrapper] ==== pilot stdout END ====
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,466 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,472 [wrapper] pilotpid: 6096
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,478 [wrapper] Pilot exit status: 0
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,593 [wrapper] pandaids: 6600502579
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,667 [wrapper] cleanup supervisor_pilot 17679 6097
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,673 [wrapper] Test setup, not cleaning
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,678 [wrapper] apfmon messages muted
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,684 [wrapper] ==== wrapper stdout END ====
2025-04-13 17:37:20 (6548): Guest Log: 2025-04-13 07:36:48,689 [wrapper] ==== wrapper stderr END ====
2025-04-13 17:37:20 (6548): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 17:37:20 (6548): Guest Log:     "exeErrorCode": 0,
2025-04-13 17:37:20 (6548): Guest Log:     "exeErrorDiag": "",
2025-04-13 17:37:20 (6548): Guest Log:     "pilotErrorCode": 0,
2025-04-13 17:37:20 (6548): Guest Log:     "pilotErrorDiag": "",
2025-04-13 17:37:20 (6548): Guest Log:  *** Listing of results directory ***
2025-04-13 17:37:20 (6548): Guest Log: total 199448
2025-04-13 17:37:20 (6548): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 12 17:11 pilot3.tar.gz
2025-04-13 17:37:20 (6548): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 12 17:35 queuedata.json
2025-04-13 17:37:20 (6548): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 12 17:36 runpilot2-wrapper.sh
2025-04-13 17:37:20 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Apr 12 21:32 input.tar.gz
2025-04-13 17:37:20 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas     10446 Apr 12 21:32 init_data.xml
2025-04-13 17:37:20 (6548): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 12 21:32 start_atlas.sh
2025-04-13 17:37:20 (6548): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 12 21:32 EVNT.44075162._001832.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 17:37:20 (6548): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 12 21:32 pandaJob.out
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas       424 Apr 12 21:34 setup.sh.local
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas    985800 Apr 12 21:41 agis_schedconf.cvmfs.json
2025-04-13 17:37:20 (6548): Guest Log: drwx------. 4 atlas atlas      4096 Apr 12 21:42 pilot3
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas 196831489 Apr 13 07:34 HITS.44075164._047100.pool.root.1
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas      1031 Apr 13 07:35 memory_monitor_summary.json
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 07:35 agis_ddmendpoints.agis.ALL.json
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas    414134 Apr 13 07:35 log.44075164._047100.job.log.tgz.1
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas        98 Apr 13 07:36 pilot_heartbeat.json
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas      7736 Apr 13 07:36 heartbeat.json
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 13 07:36 pilotlog.txt
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas   1396207 Apr 13 07:36 log.44075164._047100.job.log.1
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 07:36 output.list
2025-04-13 17:37:20 (6548): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 07:36 runtime_log
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas   1832960 Apr 13 07:36 result.tar.gz
2025-04-13 17:37:20 (6548): Guest Log: -rw-r--r--. 1 atlas atlas     10942 Apr 13 07:36 runtime_log.err
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas       660 Apr 13 07:36 pp4NDm7wtN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmLxRLDmpONkKo.diag
2025-04-13 17:37:20 (6548): Guest Log: Looking for outputfile HITS.44075164._047100.pool.root.1
2025-04-13 17:37:20 (6548): Guest Log: HITS file was successfully produced
2025-04-13 17:37:20 (6548): Guest Log: -rw-------. 1 atlas atlas 196831489 Apr 13 07:34 /home/atlas/RunAtlas/HITS.44075164._047100.pool.root.1
2025-04-13 17:37:22 (6548): Guest Log: Successfully finished the ATLAS job!
2025-04-13 17:37:22 (6548): Guest Log: Copying the results back to the shared directory!
2025-04-13 17:37:22 (6548): Guest Log:  *** Contents of shared directory: ***
2025-04-13 17:37:22 (6548): Guest Log: total 408744
2025-04-13 17:37:22 (6548): Guest Log: -rwxrwxrwx. 1 root root 219337341 Apr 12 21:31 ATLAS.root_0
2025-04-13 17:37:22 (6548): Guest Log: -rwxrwxrwx. 1 root root 196831489 Apr 13  2025 HITS.pool.root.1
2025-04-13 17:37:22 (6548): Guest Log: -rwxrwxrwx. 1 root root     10446 Apr 12 21:31 init_data.xml
2025-04-13 17:37:22 (6548): Guest Log: -rwxrwxrwx. 1 root root    508887 Apr 12 21:16 input.tar.gz
2025-04-13 17:37:22 (6548): Guest Log: -rwxrwxrwx. 1 root root   1832960 Apr 13  2025 result.tar.gz
2025-04-13 17:37:22 (6548): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 12 21:16 start_atlas.sh
2025-04-13 17:37:22 (6548): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 17:37:22 (6548): VM Completion File Detected.
2025-04-13 17:37:22 (6548): Powering off VM.
2025-04-13 17:37:22 (6548): Successfully stopped VM.
2025-04-13 17:37:22 (6548): Deregistering VM. (boinc_708f5ae1820c6838, slot#16)
2025-04-13 17:37:22 (6548): Removing network bandwidth throttle group from VM.
2025-04-13 17:37:23 (6548): Removing VM from VirtualBox.
17:37:28 (6548): called boinc_finish(0)

</stderr_txt>
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